genome.fa.s1.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  31  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10327287--10327555	137	2.0	138	83	6	350	31	27	20	19	1.97
10332117--10332157	10	4.0	10	87	3	55	39	21	2	36	1.67
10335850--10336163	43	7.3	43	85	3	411	29	29	18	22	1.97
10335828--10336163	130	2.6	130	84	2	428	29	28	17	24	1.97
10336434--10336524	43	2.1	43	87	2	130	43	9	10	35	1.73
10339752--10339866	61	1.9	61	85	5	164	39	4	6	49	1.50
10342044--10342083	20	2.1	19	86	9	55	55	0	12	32	1.38
10344912--10345035	59	2.1	59	87	3	178	32	3	8	55	1.47
10348313--10348392	29	2.7	29	84	1	97	35	18	3	42	1.69
10360113--10360461	125	2.8	122	86	3	477	29	16	21	32	1.95
10368334--10368456	51	2.4	51	86	1	176	45	0	25	28	1.59
10368964--10369052	25	3.5	26	83	7	105	57	5	3	33	1.39
10368978--10369057	26	3.2	25	84	7	101	58	5	3	32	1.37
10369081--10369131	17	3.2	16	73	15	52	72	7	3	15	1.23
10370512--10370545	12	2.8	13	86	13	54	50	0	0	50	1.00
10370886--10370973	27	3.2	27	75	20	92	35	18	7	38	1.80
10391127--10391184	23	2.6	21	76	12	62	34	3	1	60	1.24
10391178--10391415	118	2.0	119	98	1	460	42	10	6	40	1.65
10393486--10393518	17	1.9	17	88	11	50	42	15	0	42	1.46
10400303--10400466	53	3.1	53	78	5	161	34	9	26	29	1.88
10400613--10400762	29	5.3	29	67	13	105	33	14	24	28	1.94
10400599--10400877	57	4.9	57	79	6	253	33	16	22	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10400574--10400877	113	2.7	114	77	4	283	34	16	22	27	1.95
10403079--10403149	35	2.0	35	100	0	142	39	22	2	35	1.69
10403548--10403682	42	3.2	43	79	7	134	44	15	22	17	1.86
10403563--10403643	21	3.9	21	72	6	65	48	14	19	17	1.82
10413120--10413155	17	2.1	17	94	0	63	36	0	30	33	1.58
10423624--10423687	17	3.7	18	78	17	82	28	0	14	57	1.37
10423622--10423689	34	2.0	34	100	0	136	29	0	14	55	1.40
10423639--10423696	17	3.3	18	70	15	59	25	0	15	58	1.37
10426432--10426535	4	26.0	4	100	0	208	50	25	0	25	1.50
10426785--10426821	9	4.1	9	92	0	65	45	13	10	29	1.77
10430324--10430410	45	1.9	45	92	0	147	34	24	16	25	1.95
10437021--10437066	17	2.9	16	78	18	51	30	19	2	47	1.61
10450809--10450963	73	2.1	73	95	2	276	25	6	34	33	1.82
10475945--10476213	64	4.2	64	91	0	405	36	12	14	37	1.83
10475946--10476234	32	9.0	32	74	0	247	35	11	13	39	1.82
10477205--10477237	17	2.0	17	88	5	50	33	0	21	45	1.52
10479197--10479258	29	2.1	29	85	11	83	56	17	8	17	1.64
10479583--10479723	49	2.8	49	81	8	142	33	19	16	30	1.94
10485484--10485528	16	2.9	15	77	6	54	57	4	11	26	1.52
10485484--10485523	16	2.6	16	80	4	55	60	2	10	27	1.42
10485703--10485754	26	2.0	27	84	3	70	28	1	0	69	0.99
10490372--10490400	14	2.1	14	100	0	58	44	27	0	27	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10490375--10490408	14	2.4	14	90	0	50	38	35	0	26	1.57
10492400--10492449	26	2.0	26	88	4	75	42	0	6	52	1.26
10492445--10492474	6	5.0	6	100	0	60	83	0	0	16	0.65
10494940--10494977	12	3.1	12	82	17	51	47	0	0	52	1.00
10495768--10495847	31	2.6	31	93	0	133	46	21	13	18	1.84
10497417--10497459	7	6.1	7	86	0	50	44	37	0	18	1.50
10497391--10497449	21	2.8	20	76	7	55	47	30	3	18	1.65
10497410--10497449	14	2.9	14	82	14	55	47	30	0	22	1.52
10497964--10497995	13	2.5	13	100	0	64	18	9	9	62	1.52
10498042--10498330	152	1.9	152	80	3	339	33	20	17	28	1.95
10498613--10498682	29	2.4	30	77	13	74	42	0	2	54	1.15
10498714--10498765	26	2.0	26	88	3	79	50	3	0	46	1.20
10498838--10499063	44	5.1	44	69	16	144	36	25	4	33	1.76
10498912--10498978	16	4.2	16	73	3	55	31	28	4	35	1.77
10499045--10499100	16	3.5	16	80	0	76	30	25	5	39	1.78
10498826--10499098	133	2.0	134	90	0	431	35	25	4	34	1.76
10508833--10508890	29	2.0	30	86	10	84	39	1	5	53	1.33
10508875--10508939	19	3.4	19	77	12	71	40	3	4	52	1.38
10508867--10508939	19	3.8	20	74	16	66	38	2	5	53	1.39
10509708--10509756	23	2.1	23	84	0	62	34	2	0	63	1.06
10510395--10510490	39	2.5	39	77	14	94	40	16	6	36	1.74
10511730--10511837	55	1.9	56	92	1	182	46	12	5	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10515173--10515299	36	3.5	36	80	6	116	40	28	12	18	1.87
10516238--10516279	21	2.0	21	100	0	84	42	19	4	33	1.72
10524344--10524413	36	1.9	36	85	0	95	42	28	12	15	1.84
10526352--10526382	16	1.9	16	100	0	62	64	0	9	25	1.24
10541587--10541625	20	2.1	19	90	9	62	53	2	23	20	1.57
10551473--10551508	14	2.6	14	87	12	56	86	0	13	0	0.58
10551473--10551507	18	1.9	18	88	0	52	85	0	14	0	0.59
10551473--10551509	15	2.6	14	86	4	56	86	0	13	0	0.57
10558760--10558792	17	1.9	17	100	0	66	42	6	27	24	1.78
10578638--10578746	51	2.1	52	89	1	166	28	19	7	44	1.77
10582991--10583045	26	2.1	27	89	3	85	29	25	14	30	1.95
10584859--10585005	73	2.0	74	98	1	287	40	12	19	27	1.87
10602136--10602174	17	2.3	17	90	0	60	56	10	12	20	1.65
10602289--10602333	22	2.1	21	84	12	56	35	0	11	53	1.37
10602312--10602358	16	2.9	16	75	12	60	44	0	10	44	1.38
10607343--10607376	18	1.9	18	88	5	52	20	26	41	11	1.87
10611357--10611403	16	2.9	16	72	12	51	44	0	12	42	1.42
10617445--10617480	2	18.0	2	100	0	72	0	50	0	50	1.00
10624364--10624398	18	2.0	17	88	5	52	45	0	0	54	0.99
10624632--10624685	16	3.4	16	92	0	90	27	35	1	35	1.68
10625246--10625485	80	3.0	80	100	0	480	28	8	20	42	1.81
10627254--10627278	8	3.1	8	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10631041--10631092	24	2.2	24	89	0	77	55	9	1	32	1.43
10638734--10638778	10	4.5	10	83	10	65	8	11	2	77	1.07
10638734--10638778	21	2.2	20	88	7	65	8	11	2	77	1.07
10638746--10638789	20	2.2	20	84	8	54	9	15	0	75	1.05
10639358--10639401	23	1.9	23	81	9	54	61	9	6	22	1.50
10643996--10644045	25	2.0	25	100	0	100	48	16	12	24	1.79
10644432--10644553	44	2.7	45	84	1	165	22	19	14	42	1.88
10644432--10644605	45	3.9	44	80	6	163	23	18	13	43	1.86
10644432--10644598	89	1.9	88	80	7	194	23	18	14	43	1.87
10660973--10661020	20	2.5	20	75	3	53	41	6	2	50	1.39
10662373--10662513	31	4.6	31	67	13	85	41	7	17	34	1.76
10662372--10662513	63	2.3	60	83	6	169	40	7	16	35	1.76
10669760--10669791	15	2.1	15	94	0	55	50	0	0	50	1.00
10672747--10672796	3	16.7	3	87	8	75	72	0	28	0	0.86
10685851--10685890	17	2.4	17	86	0	53	35	32	15	17	1.91
10685967--10685998	15	2.1	15	100	0	64	40	25	0	34	1.56
10707036--10707178	70	2.0	70	98	0	277	36	23	15	25	1.94
10714622--10714931	157	2.0	157	94	0	548	47	5	3	43	1.42
10715061--10715112	16	3.2	16	94	0	95	38	34	0	26	1.57
10717316--10717345	14	2.1	14	93	0	51	76	0	20	3	0.92
10723405--10723439	6	5.8	6	96	0	61	17	28	0	54	1.43
10730124--10730350	113	2.0	113	95	1	411	39	10	19	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10733779--10733813	6	5.8	6	96	0	61	17	28	0	54	1.43
10737320--10737367	22	2.2	22	88	7	71	29	0	39	31	1.57
10742041--10742087	10	4.6	10	85	12	51	61	4	0	34	1.15
10744033--10744104	25	3.0	23	73	13	56	62	0	1	36	1.04
10748242--10749116	290	3.0	290	92	3	1388	28	19	18	32	1.96
10748313--10749192	295	3.0	295	92	3	1408	27	20	18	32	1.96
10754240--10754304	22	3.0	22	79	4	69	44	18	20	16	1.87
10754296--10754594	32	9.4	32	79	4	275	36	22	21	20	1.95
10754316--10754597	64	4.4	64	82	6	356	36	22	21	19	1.95
10754765--10754847	24	3.5	23	83	4	94	46	25	7	20	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141