genome.fa.s1.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  100  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32495647--32495699	24	2.2	25	80	10	65	50	32	3	13	1.59
32509738--32509790	24	2.2	24	82	0	70	50	32	1	15	1.54
32513730--32514543	27	30.2	27	84	2	938	42	21	16	19	1.89
32514784--32514856	26	2.8	26	81	6	94	16	21	24	36	1.94
32514959--32515115	28	5.6	28	84	4	194	22	22	22	32	1.98
32524786--32524843	25	2.3	25	80	11	66	32	5	1	60	1.29
32542672--32542718	17	2.5	19	86	10	62	70	6	4	19	1.26
32543060--32543147	27	3.3	26	80	4	86	20	21	23	34	1.97
32545296--32545320	2	12.5	2	100	0	50	52	0	0	48	1.00
32545704--32545886	89	2.1	89	95	0	330	34	18	12	34	1.88
32545988--32546065	10	8.1	10	73	8	54	66	2	3	26	1.22
32545992--32546062	19	3.8	18	78	14	81	67	2	4	25	1.22
32546667--32546711	20	2.1	21	84	8	56	42	2	2	53	1.25
32547265--32547315	22	2.3	22	86	6	68	33	33	0	33	1.58
32547349--32547405	28	2.0	28	90	6	89	40	0	1	57	1.09
32547367--32547406	20	2.0	21	85	9	57	42	0	0	57	0.98
32547352--32547412	28	2.1	28	85	8	79	39	0	1	59	1.08
32547440--32547590	76	2.0	76	90	0	239	39	6	17	35	1.76
32549725--32550102	29	13.4	29	86	7	505	48	29	0	21	1.56
32549698--32550102	139	3.0	136	82	11	497	48	28	0	21	1.57
32553008--32553356	124	2.8	124	92	0	565	32	20	16	30	1.95
32556574--32556602	12	2.3	13	94	5	51	34	10	0	55	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32560361--32560406	19	2.4	18	82	10	56	23	23	13	39	1.90
32569300--32569499	44	4.5	44	75	12	144	30	20	23	26	1.99
32569388--32569870	175	2.8	175	94	1	828	31	19	21	27	1.98
32569388--32569809	44	9.7	42	70	13	237	30	20	21	27	1.98
32571707--32571735	12	2.3	13	94	5	51	34	10	0	55	1.34
32576968--32577127	37	4.3	37	81	3	180	21	13	27	37	1.91
32578118--32578231	48	2.4	48	83	1	147	20	28	22	28	1.98
32586422--32586502	40	2.0	40	100	0	162	34	9	23	32	1.88
32591760--32591829	27	2.6	27	82	10	74	71	2	18	7	1.22
32594576--32594671	29	3.3	29	80	1	111	42	20	13	22	1.87
32613675--32614014	51	6.7	50	77	6	290	29	25	15	29	1.95
32613725--32614018	103	2.9	102	89	2	430	29	26	14	29	1.95
32617140--32617254	43	2.7	43	83	2	160	29	29	20	20	1.98
32630893--32630930	19	2.0	19	90	10	60	39	42	0	18	1.50
32631151--32631187	14	2.6	14	82	0	56	45	27	0	27	1.54
32631558--32631717	83	1.9	82	92	1	266	27	28	23	20	1.99
32631558--32631720	41	4.0	41	92	1	263	26	30	23	19	1.98
32631761--32631848	39	2.2	40	90	6	135	21	21	21	35	1.96
32631855--32631880	12	2.2	12	100	0	52	46	30	15	7	1.74
32632174--32632248	23	3.3	23	85	7	107	32	25	20	22	1.98
32636250--32636279	15	1.9	16	93	6	53	23	0	0	76	0.78
32638063--32638115	23	2.3	23	78	15	56	15	11	0	73	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32638574--32638630	3	18.7	3	96	3	105	68	0	0	31	0.90
32645604--32645854	124	2.0	125	99	0	495	39	13	12	34	1.83
32652370--32652552	90	2.0	91	97	2	350	44	6	9	39	1.64
32652397--32652582	90	2.1	88	87	8	259	46	6	7	38	1.59
32660404--32660443	19	2.0	20	86	13	57	77	0	15	7	0.98
32661727--32662496	45	17.1	45	89	0	1119	28	16	25	30	1.97
32665363--32665522	50	3.2	50	95	1	284	31	11	23	33	1.91
32665425--32665697	87	3.1	87	74	14	292	31	14	22	31	1.94
32665476--32665596	37	3.3	37	94	1	199	29	14	21	34	1.92
32665549--32665708	51	3.2	51	85	5	225	34	13	22	29	1.93
32666364--32667242	44	19.7	44	72	13	442	31	19	20	28	1.97
32666818--32666973	40	3.8	40	78	6	134	28	20	21	30	1.98
32666892--32667305	134	3.1	134	95	2	724	32	20	18	27	1.96
32666861--32667301	90	5.0	90	74	14	321	32	20	19	27	1.97
32666820--32667295	44	10.9	42	74	13	330	31	20	19	27	1.97
32667563--32667779	44	4.8	45	78	8	215	29	20	23	26	1.99
32667568--32667779	93	2.3	95	82	5	249	28	20	24	26	1.99
32667563--32667814	137	1.9	137	83	9	338	29	21	22	26	1.99
32669603--32669633	12	2.6	12	94	0	53	29	6	3	61	1.37
32673356--32673398	21	2.0	21	86	0	59	74	13	11	0	1.07
32673420--32673453	12	2.8	12	86	13	52	76	0	23	0	0.79
32673851--32673875	11	2.3	11	100	0	50	52	0	20	28	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32676316--32676459	23	6.3	23	75	19	122	20	15	20	43	1.88
32676323--32676485	43	3.6	43	72	17	123	20	16	20	41	1.90
32676331--32676510	92	2.0	92	87	0	261	22	16	19	41	1.90
32681548--32681575	4	7.0	4	100	0	56	75	0	0	25	0.81
32685776--32685924	43	3.5	42	77	9	117	28	24	18	28	1.98
32685780--32685924	44	3.4	43	72	13	120	28	24	18	28	1.98
32690037--32690160	58	2.1	58	86	2	169	46	0	3	49	1.23
32690345--32690415	16	4.4	16	78	3	72	30	22	5	40	1.77
32693398--32693650	126	2.0	127	98	0	490	40	7	20	31	1.80
32694380--32694418	19	2.1	19	90	4	62	35	0	15	48	1.45
32694644--32694719	23	3.3	23	83	7	109	25	19	23	31	1.98
32697951--32698002	20	2.5	21	81	6	61	30	19	5	44	1.74
32703964--32704107	75	1.9	75	89	0	225	26	25	25	22	2.00
32703964--32704136	75	2.3	75	85	2	222	23	23	27	24	2.00
32708635--32708703	21	3.3	21	64	9	52	46	17	20	15	1.84
32708597--32708717	42	2.9	41	83	4	143	46	18	20	14	1.84
32710431--32710487	30	1.9	30	85	7	80	26	17	26	29	1.97
32713356--32713405	25	2.0	25	84	7	66	34	0	2	64	1.05
32717284--32717327	19	2.3	19	88	0	70	11	13	4	70	1.31
32726589--32726767	88	2.0	88	90	3	277	37	8	16	36	1.79
32727475--32727513	20	1.9	21	85	15	55	41	5	12	41	1.65
32729341--32729486	65	2.2	65	96	0	265	17	10	28	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32753783--32753900	60	2.0	60	93	0	200	16	31	13	38	1.88
32759318--32759389	35	2.0	36	97	2	137	27	11	34	26	1.90
32760948--32760982	18	2.0	18	88	5	54	62	0	0	37	0.95
32764845--32764894	23	2.3	21	81	18	59	34	6	2	58	1.34
32766478--32766576	49	2.0	50	92	2	164	35	18	13	33	1.89
32766600--32766686	26	3.2	26	65	15	68	35	8	11	44	1.70
32766578--32766686	55	2.0	55	92	0	182	32	11	11	45	1.74
32770404--32770441	13	2.9	13	100	0	76	44	15	7	31	1.75
32772226--32772250	13	1.9	13	100	0	50	64	8	0	28	1.22
32775497--32775536	11	3.6	11	89	0	62	52	17	10	20	1.72
32777954--32778125	2	87.5	2	95	3	269	53	1	0	45	1.07
32782224--32782322	32	3.1	32	85	0	144	34	22	13	30	1.92
32782197--32782321	64	2.0	64	87	3	180	36	21	13	28	1.92
32782975--32783009	18	1.9	18	94	0	61	37	11	20	31	1.88
32782987--32783034	25	1.9	25	91	0	78	39	14	18	27	1.90
32782971--32783069	43	2.3	43	89	0	144	36	16	20	27	1.93
32785333--32785383	20	2.8	17	78	16	57	27	7	3	60	1.42
32791133--32791207	39	1.9	39	91	0	123	30	32	8	29	1.86
32792936--32793004	20	3.5	20	71	11	70	39	18	8	33	1.82
32792924--32793002	39	2.0	39	97	0	149	36	15	8	39	1.78
32802625--32802946	162	2.0	163	91	1	522	31	17	23	27	1.97
32804190--32804248	4	13.8	4	75	22	50	28	1	0	69	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32804193--32804226	10	3.6	10	92	7	54	35	0	0	64	0.94
32804185--32804248	24	2.6	25	82	4	78	29	1	0	68	0.99
32806756--32806960	108	1.9	108	83	4	270	33	14	23	28	1.94
32830164--32830207	19	2.3	19	88	7	63	59	27	2	11	1.44
32833585--32833638	29	1.9	27	85	7	72	48	1	11	38	1.50
32838065--32838108	23	1.9	23	86	9	63	40	0	2	56	1.11
32838204--32838232	14	2.0	15	93	6	51	13	10	0	75	1.04
32838224--32838563	179	1.9	180	83	5	438	30	10	9	48	1.70
32838945--32839003	21	2.9	21	82	9	61	35	0	5	59	1.20
32840131--32840242	27	4.1	27	82	0	107	22	24	16	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141