Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  16  of  141  ( 16825 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5307352--5307438
44
2.0
44
88
0
129
27
11
13
47
1.78
5308987--5309095
56
1.9
57
81
9
134
36
10
16
36
1.82
5319099--5319128
16
1.9
16
93
6
53
46
10
0
43
1.37
5332353--5332395
21
2.0
21
86
8
61
34
0
6
58
1.25
5332560--5332652
44
2.1
44
84
9
118
35
25
4
34
1.76
5332634--5332689
16
3.5
16
85
4
78
28
23
7
41
1.80
5342124--5342183
24
2.6
23
92
5
102
36
1
0
61
1.06
5342414--5342449
17
2.1
17
94
0
63
52
2
5
38
1.39
5344636--5344692
22
2.5
24
80
11
75
70
1
12
15
1.25
5347469--5347666
50
3.9
50
82
6
220
26
20
29
23
1.99
5351024--5351086
23
2.9
22
81
13
85
39
25
19
15
1.91
5352508--5352575
25
2.8
24
70
12
59
54
1
7
36
1.37
5352727--5352762
12
3.0
12
91
0
63
55
0
11
33
1.35
5352727--5352783
24
2.4
24
82
5
62
57
1
8
31
1.39
5353941--5353989
22
2.2
22
82
10
64
22
6
32
38
1.79
5354319--5354586
44
6.2
44
70
5
141
28
25
18
27
1.98
5354554--5355212
128
5.2
128
92
0
1052
25
25
20
29
1.99
5356375--5356415
7
6.0
7
88
5
66
17
12
0
70
1.16
5356375--5356411
13
2.8
13
91
4
56
16
10
0
72
1.10
5356375--5356415
20
2.0
20
95
0
73
17
12
0
70
1.16
5357280--5357358
30
2.7
28
81
9
86
11
10
5
73
1.24
5357289--5357369
29
2.8
28
83
7
90
9
8
6
75
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5362217--5362284
25
2.8
24
70
12
59
54
1
7
36
1.37
5362345--5362384
21
1.9
21
89
0
62
65
5
7
22
1.38
5362433--5362468
12
3.0
12
91
0
63
55
0
11
33
1.35
5362719--5362754
16
2.2
16
100
0
72
50
27
13
8
1.71
5367836--5367885
17
2.9
18
83
16
70
10
8
4
78
1.09
5367846--5367883
18
2.2
16
90
9
58
7
7
5
78
1.07
5367836--5367886
25
2.0
26
85
11
70
9
7
5
76
1.15
5368752--5368777
8
3.2
8
100
0
52
76
0
0
23
0.78
5376478--5376524
24
2.0
24
83
8
60
29
0
17
53
1.44
5377472--5377504
2
16.5
2
100
0
66
51
0
0
48
1.00
5385699--5385775
27
2.7
26
80
13
82
35
1
3
59
1.24
5388464--5388503
19
2.1
19
100
0
80
25
15
20
40
1.90
5394959--5394993
10
3.5
10
100
0
70
20
0
28
51
1.47
5394961--5394995
16
2.2
16
89
0
52
17
0
31
51
1.45
5396937--5396969
15
2.2
15
94
0
57
57
12
12
18
1.64
5397301--5397552
24
10.8
24
70
15
152
54
4
6
34
1.47
5397323--5397584
69
3.8
69
75
9
196
53
4
6
34
1.48
5397390--5397583
70
2.8
69
75
6
185
55
4
6
34
1.46
5398355--5398424
19
3.7
20
81
9
92
14
32
2
50
1.58
5406004--5406063
20
3.3
18
69
17
52
35
1
0
63
1.05
5406642--5406703
30
2.1
30
100
0
124
25
6
22
45
1.76
5410837--5411124
142
2.0
143
99
0
569
47
9
6
36
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5413436--5413473
9
4.2
9
83
9
51
31
0
2
65
1.06
5415449--5415488
14
2.9
14
84
0
53
40
5
5
50
1.46
5417161--5417503
44
7.8
44
72
11
190
26
23
20
29
1.99
5417387--5417587
41
4.8
41
70
11
127
27
22
21
28
1.99
5417172--5417600
129
3.3
129
85
2
547
26
22
21
30
1.99
5417213--5417588
44
8.7
43
72
10
223
26
22
21
29
1.99
5417610--5418727
100
11.2
100
90
0
1477
25
19
22
32
1.97
5417611--5418694
50
21.7
50
73
2
834
25
19
22
32
1.97
5418867--5419066
44
4.6
43
71
18
144
28
24
19
28
1.98
5418711--5419345
132
4.8
132
89
1
967
27
23
18
30
1.98
5419002--5419198
44
4.5
43
69
20
147
28
26
17
27
1.97
5420577--5420639
6
10.3
6
75
10
56
1
15
3
79
0.94
5420604--5420640
9
3.9
9
92
7
56
0
16
0
83
0.64
5422908--5422941
12
2.8
12
81
0
50
8
23
23
44
1.81
5427465--5427494
12
2.5
12
94
0
51
73
3
16
6
1.18
5427666--5427716
26
2.0
26
84
3
68
62
7
7
21
1.48
5429120--5429149
14
2.1
14
100
0
60
20
33
0
46
1.51
5429948--5429981
17
2.0
17
94
0
59
32
11
20
35
1.89
5429892--5430040
80
1.9
80
89
0
235
25
19
28
26
1.99
5430126--5430336
108
2.0
108
86
1
298
19
19
33
27
1.96
5430858--5430905
22
2.2
22
84
0
60
22
20
18
37
1.94
5431588--5431630
7
6.1
7
84
15
54
83
0
16
0
0.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5431510--5431609
52
2.0
50
82
5
112
73
6
7
14
1.24
5442981--5443019
20
2.0
20
90
5
62
48
5
10
35
1.59
5447786--5447823
20
1.9
20
84
10
51
34
5
5
55
1.45
5451931--5451970
17
2.3
17
86
4
53
7
17
0
75
1.03
5451939--5451983
17
2.5
17
85
7
54
6
22
0
71
1.09
5451987--5452046
7
8.6
7
94
0
102
13
26
11
48
1.76
5452045--5452078
7
5.1
7
86
13
54
0
23
0
76
0.79
5452042--5452079
12
3.2
12
88
7
51
0
21
0
78
0.74
5452042--5452078
19
1.9
19
94
0
65
0
21
0
78
0.75
5452613--5452670
30
1.9
31
92
3
100
18
0
18
62
1.34
5454419--5454464
22
2.1
23
84
8
60
50
0
19
30
1.48
5456623--5456799
84
2.1
85
97
2
338
55
2
5
36
1.36
5456667--5456801
42
3.2
42
67
12
132
54
2
7
36
1.41
5458357--5458544
53
3.5
53
100
0
376
47
6
4
40
1.50
5461576--5461600
11
2.3
11
100
0
50
56
16
8
20
1.65
5468261--5468337
40
2.0
38
89
5
118
42
11
9
36
1.73
5476637--5476703
34
1.9
35
87
3
100
32
8
11
46
1.72
5477465--5477503
12
3.2
12
81
0
51
48
5
25
20
1.70
5487431--5487487
21
2.7
21
86
0
69
43
8
15
31
1.78
5499585--5499640
12
4.8
12
78
12
62
5
1
14
78
1.00
5499585--5499640
23
2.4
23
81
3
67
5
1
14
78
1.00
5499862--5499898
13
3.0
13
80
11
51
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5500505--5500605
35
2.9
35
86
2
123
35
18
23
21
1.96
5502650--5502694
22
2.1
22
84
8
58
22
2
2
73
1.05
5502728--5502776
15
3.2
15
74
5
53
48
12
22
16
1.79
5504197--5504259
20
3.2
20
81
6
74
52
4
0
42
1.22
5504181--5504280
40
2.5
40
73
15
98
58
4
1
37
1.24
5504475--5504532
21
2.8
21
83
0
71
25
31
10
32
1.89
5505322--5505699
43
8.8
43
87
0
479
29
28
19
21
1.98
5505345--5505699
128
2.8
128
86
3
453
30
29
19
20
1.97
5506040--5506102
19
3.2
19
70
12
63
61
22
3
12
1.45
5506025--5506088
22
3.0
22
66
13
62
57
20
7
14
1.61
5506621--5506713
25
3.7
25
100
0
186
55
11
16
16
1.68
5509344--5509374
7
4.4
7
91
0
53
38
58
3
0
1.15
5509430--5509506
39
2.0
40
86
2
111
35
40
2
22
1.68
5509432--5509515
39
2.1
40
82
2
98
35
42
2
19
1.64
5510587--5510901
41
7.7
41
82
4
386
30
26
21
20
1.98
5510587--5510900
82
3.8
82
90
1
461
30
26
21
20
1.98
5510937--5511068
38
3.4
37
80
10
149
21
21
21
34
1.97
5510955--5511069
38
3.0
38
84
5
160
23
20
21
33
1.97
5511075--5511100
12
2.2
12
100
0
52
46
30
15
7
1.74
5511334--5511394
20
3.0
20
81
9
77
14
18
9
57
1.64
5520419--5520467
21
2.3
21
79
6
55
26
28
16
28
1.97
5522107--5522145
21
1.9
20
84
5
51
51
2
7
38
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5522204--5522266
16
3.9
16
77
4
56
61
1
0
36
1.05
5522703--5522751
22
2.2
23
79
17
59
32
2
4
61
1.26
5522711--5522764
10
5.2
10
76
8
54
38
1
3
55
1.28
5522720--5522769
22
2.3
22
79
6
57
40
2
4
54
1.31
5525293--5525317
13
1.9
13
100
0
50
56
0
0
44
0.99
5529458--5529553
9
10.7
9
84
4
122
44
23
8
22
1.80
5529783--5529971
83
2.3
83
100
0
378
40
24
14
20
1.89
5533678--5533710
11
3.1
11
95
4
59
45
0
0
54
0.99
5533677--5533737
16
3.3
19
70
27
58
45
0
0
54
1.00
5533669--5533725
15
3.3
15
71
28
51
45
0
0
54
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141