genome.fa.s1.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  60  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19508955--19508996	22	2.0	21	85	4	57	23	7	11	57	1.59
19513321--19513414	20	4.7	19	76	5	89	10	28	20	40	1.86
19513321--19513419	40	2.5	40	78	6	110	12	27	20	40	1.87
19514428--19514479	26	2.0	26	85	3	70	44	15	9	30	1.78
19514441--19514504	26	2.4	27	81	2	76	34	17	15	32	1.91
19521835--19521897	29	2.2	29	91	8	103	34	19	11	34	1.87
19523100--19523144	21	2.1	22	83	4	56	57	0	4	37	1.19
19525294--19525322	3	9.7	3	100	0	58	0	34	0	65	0.93
19526349--19526389	20	2.0	20	86	9	57	19	7	51	21	1.71
19538957--19539185	90	2.6	90	81	10	256	34	9	18	37	1.83
19539611--19539653	10	4.5	10	80	11	54	0	13	0	86	0.58
19539611--19539655	18	2.6	18	89	3	65	0	13	0	86	0.57
19539616--19539653	14	2.7	14	84	15	60	0	13	0	86	0.56
19539610--19539655	24	2.0	24	86	4	67	0	15	0	84	0.62
19545141--19545179	18	2.2	18	86	9	53	46	7	17	28	1.76
19548468--19548533	26	2.5	26	85	0	78	28	24	22	24	1.99
19563624--19563691	16	4.2	16	92	0	109	29	0	35	35	1.58
19563884--19563940	15	3.3	15	71	28	51	54	0	0	45	0.99
19563899--19563931	11	3.1	11	95	4	59	54	0	0	45	0.99
19569612--19569650	19	2.0	20	90	9	64	71	0	0	28	0.86
19570115--19570158	21	2.1	21	87	8	63	38	0	15	45	1.47
19575035--19575142	28	3.9	28	80	2	110	22	22	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19575684--19575734	24	2.1	24	89	7	77	45	23	17	13	1.84
19578496--19578658	61	2.7	61	87	1	220	23	22	19	33	1.97
19578519--19578670	61	2.5	61	87	0	223	25	20	18	36	1.95
19579310--19579442	28	4.8	28	83	0	149	21	21	18	39	1.93
19579899--19579991	42	2.2	43	86	3	134	45	24	15	15	1.84
19579920--19579986	22	3.2	20	77	12	62	49	20	13	16	1.79
19585642--19585690	18	2.6	18	81	12	55	32	16	8	42	1.77
19588944--19589177	50	4.7	50	81	5	271	20	32	19	27	1.97
19592026--19592077	23	2.2	24	82	3	70	15	13	15	55	1.69
19599209--19599328	64	1.9	62	84	6	161	29	20	8	42	1.81
19601641--19601725	20	4.3	20	77	3	82	37	20	29	12	1.90
19601669--19601705	19	1.9	19	88	0	56	40	18	27	13	1.88
19607736--19607841	20	5.3	20	70	6	90	38	20	29	11	1.88
19610108--19610288	60	3.0	60	99	0	353	48	3	18	29	1.66
19614461--19614509	26	2.0	25	84	15	66	44	2	2	51	1.24
19617402--19617460	27	2.2	27	90	0	91	25	20	15	38	1.91
19623843--19623885	21	2.0	21	86	0	59	44	13	4	37	1.65
19625663--19625720	29	2.0	29	100	0	116	44	24	10	20	1.82
19639921--19639991	25	2.8	24	75	12	63	22	22	15	39	1.92
19639930--19640043	25	4.5	26	71	13	78	17	22	19	40	1.91
19639924--19640018	50	1.9	50	84	4	129	20	23	16	40	1.91
19639956--19640057	25	4.1	23	72	14	60	15	22	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19652160--19652204	21	2.1	21	84	8	56	40	51	2	6	1.41
19652568--19652972	27	15.0	27	84	0	423	18	18	21	42	1.90
19655114--19655155	12	3.5	12	81	12	59	23	40	0	35	1.55
19655109--19655155	24	1.9	24	95	4	85	27	36	0	36	1.57
19655109--19655156	14	3.6	14	76	21	50	27	35	0	37	1.57
19656233--19656274	21	2.0	21	90	9	68	26	9	4	59	1.48
19661846--19661885	21	1.9	21	84	0	53	42	2	2	52	1.28
19663060--19663093	16	2.1	17	94	5	61	67	20	0	11	1.21
19668538--19668571	17	2.0	17	88	0	50	29	23	5	41	1.78
19669085--19669171	45	1.9	46	83	6	115	40	16	20	22	1.91
19669387--19669557	32	5.4	32	83	6	213	39	19	19	21	1.92
19669387--19669557	64	2.7	64	86	5	240	39	19	19	21	1.92
19669595--19669664	27	2.7	26	82	10	72	32	21	24	21	1.98
19669729--19669810	24	3.4	24	82	0	110	47	23	6	23	1.73
19669864--19670350	27	18.1	27	80	5	371	20	16	20	43	1.88
19669864--19670350	81	6.0	81	80	5	434	20	16	20	43	1.88
19669864--19670350	54	9.0	54	81	2	464	20	16	20	43	1.88
19671097--19671152	4	14.2	4	74	10	53	23	1	3	71	1.11
19671089--19671152	23	3.0	20	85	14	92	21	1	6	70	1.18
19672870--19672903	18	1.9	17	88	5	50	17	0	8	73	1.08
19673847--19673883	19	1.9	19	100	0	74	75	2	5	16	1.10
19684616--19684662	23	2.0	23	100	0	94	36	17	8	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19685693--19685794	25	4.1	25	91	3	145	25	27	21	25	1.99
19686405--19686446	20	2.2	20	87	12	61	66	2	14	16	1.35
19688068--19688125	30	1.9	31	85	3	82	48	5	20	25	1.70
19708609--19708691	35	2.4	35	78	8	89	10	24	33	31	1.90
19709657--19709681	13	1.9	13	100	0	50	16	12	0	72	1.13
19720304--19720330	11	2.5	11	100	0	54	37	7	0	55	1.28
19723535--19723598	30	2.2	29	81	10	76	29	28	6	35	1.82
19723542--19723598	30	1.9	30	85	3	80	29	24	7	38	1.82
19726224--19726338	30	3.9	30	83	2	151	27	25	12	34	1.91
19729787--19730033	32	7.7	32	77	6	162	39	21	19	20	1.93
19729787--19730033	96	2.6	96	75	7	232	39	21	19	20	1.93
19729794--19730021	64	3.6	64	78	5	221	39	21	17	20	1.92
19730195--19730281	24	3.7	23	78	4	84	45	25	6	21	1.76
19730317--19730767	27	16.7	27	84	1	510	23	21	21	33	1.97
19730691--19730772	26	3.1	27	87	3	112	14	15	29	40	1.87
19730322--19730901	27	21.5	27	80	3	191	22	21	20	36	1.96
19735192--19735426	50	4.7	50	78	5	190	27	22	27	22	1.99
19735197--19735377	100	1.8	100	80	2	220	28	20	29	21	1.98
19736951--19736998	24	2.0	25	84	12	64	25	39	0	35	1.56
19748592--19748816	100	2.2	100	97	0	423	24	20	19	36	1.95
19753176--19753249	33	2.2	33	92	0	130	29	5	35	29	1.80
19760630--19761440	419	1.9	419	83	4	1026	32	16	21	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19779491--19779540	26	1.9	26	95	0	91	36	10	24	30	1.88
19780501--19780536	3	12.0	3	100	0	72	33	0	0	66	0.92
19799609--19799672	29	2.2	29	88	0	92	40	9	35	14	1.78
19807797--19807844	20	2.3	20	96	3	87	47	8	20	22	1.77
19809140--19809279	50	2.8	50	80	0	154	27	21	28	22	1.99
19809533--19809575	4	10.8	4	79	0	50	51	2	20	25	1.60
19815899--19816038	50	2.8	50	76	4	122	27	18	30	23	1.98
19816292--19816319	12	2.3	12	100	0	56	57	7	17	17	1.62
19831024--19831076	27	2.0	27	96	0	97	22	11	28	37	1.89
19866185--19866213	13	2.1	14	93	6	51	51	0	0	48	1.00
19871391--19871458	34	2.0	35	82	5	86	27	23	25	23	2.00
19872158--19872215	25	2.3	26	87	3	82	36	13	17	32	1.89
19889868--19889914	24	1.9	24	86	4	67	36	0	36	27	1.57
19890544--19890883	27	12.6	27	83	0	385	42	23	17	15	1.88
19893452--19893710	27	9.6	27	85	2	333	40	24	17	17	1.91
19894093--19894184	28	3.3	29	87	4	127	27	23	23	25	2.00
19895653--19895869	27	8.1	27	82	4	244	41	21	18	17	1.90
19896093--19896144	26	2.0	26	84	3	68	25	21	13	40	1.89
19896267--19896371	28	3.8	28	84	0	129	24	23	24	26	2.00
19897712--19897931	27	8.2	27	73	15	163	43	19	16	20	1.88
19897764--19897931	81	2.1	80	86	4	230	42	19	17	21	1.89
19897764--19897943	27	6.7	27	80	5	193	40	20	16	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19898332--19898427	28	3.4	28	91	2	149	29	21	25	23	1.99
19899115--19899499	27	14.2	27	81	2	414	43	20	17	18	1.89
19899883--19899951	28	2.5	28	88	4	95	24	24	26	24	2.00
19900603--19900977	27	14.0	26	82	3	383	42	20	17	19	1.89
19900603--19900990	54	7.2	54	82	4	426	42	20	17	19	1.90
19901337--19901405	28	2.5	28	88	4	95	24	24	26	24	2.00
19902195--19902221	14	1.9	14	100	0	54	14	25	22	37	1.93
19902358--19902649	149	2.0	148	90	0	458	32	16	10	40	1.83
19906047--19906088	17	2.4	18	88	7	61	54	7	2	35	1.41
19906427--19907083	35	18.8	35	98	0	1244	17	22	19	40	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141