genome.fa.s1.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  97  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31490507--31490742	99	2.4	100	83	5	298	27	20	30	22	1.98
31491917--31493503	791	2.0	792	96	0	2926	33	8	20	37	1.82
31494806--31495053	50	4.8	50	87	3	334	22	22	31	22	1.98
31511671--31511727	22	2.5	23	82	2	71	12	7	29	50	1.66
31511659--31511729	23	3.1	22	79	4	79	14	7	28	50	1.68
31513520--31513688	67	2.5	67	88	0	239	22	24	18	34	1.96
31513570--31513808	120	2.0	120	89	0	361	21	25	16	35	1.94
31515447--31515481	18	1.9	18	88	0	52	54	2	42	0	1.15
31518482--31518826	54	6.4	54	78	7	308	43	20	17	17	1.88
31518482--31518842	81	4.5	80	78	7	349	43	20	18	18	1.88
31518482--31518842	27	13.4	27	77	1	278	43	20	18	18	1.88
31519171--31519228	27	2.1	29	87	6	84	27	25	20	25	1.99
31525980--31526228	27	9.3	27	81	4	290	42	18	21	16	1.89
31525980--31526215	107	2.2	107	83	1	294	42	19	21	16	1.89
31529111--31529152	21	2.0	21	100	0	84	47	0	9	42	1.36
31529113--31529162	21	2.4	21	89	0	73	48	0	8	44	1.32
31530463--31530502	21	1.9	21	94	0	71	47	15	5	32	1.66
31530451--31530530	20	3.9	21	76	9	76	41	13	6	38	1.70
31548165--31548331	74	2.3	69	79	10	160	23	9	22	43	1.83
31559685--31559754	25	2.8	26	78	6	90	24	17	21	37	1.94
31573891--31573942	27	1.9	27	100	0	104	36	23	11	28	1.90
31574592--31574764	39	4.4	39	82	2	186	34	16	31	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31574591--31574654	20	3.2	20	68	4	58	37	17	26	18	1.93
31574670--31574733	20	3.2	20	74	12	69	29	15	37	17	1.91
31574668--31574762	20	4.8	21	71	13	67	29	15	37	16	1.90
31574679--31574738	19	3.1	19	70	13	59	30	16	36	16	1.91
31574592--31574764	78	2.2	78	84	2	213	34	16	31	17	1.92
31575029--31575067	19	2.1	19	90	0	60	2	43	10	43	1.52
31578679--31578720	15	2.7	16	82	14	52	45	0	2	52	1.13
31578670--31578711	15	2.9	15	82	10	52	47	0	0	52	1.00
31578934--31578987	16	3.4	16	84	0	72	27	35	3	33	1.75
31585843--31585902	25	2.3	25	80	5	66	40	11	20	28	1.87
31589073--31589190	38	3.0	38	88	9	191	34	7	20	37	1.81
31590235--31590308	29	2.6	29	78	4	78	21	14	28	35	1.93
31592862--31592910	18	2.7	18	80	0	62	22	36	4	36	1.73
31592883--31592925	21	2.0	21	81	0	50	20	39	4	34	1.74
31592869--31592936	18	3.6	19	75	13	68	25	36	5	32	1.80
31605180--31605347	46	3.7	46	86	4	214	17	23	15	43	1.87
31605180--31605390	91	2.3	91	81	4	221	17	22	16	43	1.88
31605317--31605484	45	3.7	45	85	0	201	22	20	18	38	1.94
31606909--31607057	56	2.7	56	91	4	221	38	14	21	25	1.92
31606938--31607032	28	3.4	27	69	21	88	41	16	16	25	1.89
31606971--31607052	27	3.0	28	65	22	73	43	12	20	23	1.85
31607040--31607228	27	6.7	28	71	13	86	29	16	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31606909--31607187	56	4.9	56	80	9	214	35	15	22	26	1.94
31607162--31607228	27	2.5	27	87	0	98	20	20	26	31	1.98
31608079--31608124	24	1.9	24	81	0	56	13	36	32	17	1.88
31618983--31619010	8	3.5	8	100	0	56	0	21	14	64	1.29
31627662--31627764	53	1.9	54	88	2	154	32	14	25	28	1.95
31627845--31628045	61	3.3	61	81	3	210	33	15	25	25	1.95
31640458--31640484	2	13.5	2	100	0	54	48	0	0	51	1.00
31640861--31640981	41	3.0	41	95	0	206	32	22	17	28	1.96
31643921--31644070	47	3.2	47	91	0	237	38	21	12	28	1.89
31645130--31645168	16	2.4	17	91	4	62	69	0	23	7	1.14
31646728--31646779	15	3.2	15	73	19	50	44	0	1	53	1.11
31647054--31647085	13	2.5	13	94	0	55	9	12	15	62	1.54
31649312--31649369	24	2.4	24	85	0	80	55	6	10	27	1.59
31656466--31656490	12	2.1	12	100	0	50	44	0	16	40	1.47
31661055--31661093	21	1.9	20	89	5	60	17	17	15	48	1.81
31660999--31661198	105	1.9	105	85	2	276	24	7	19	49	1.73
31662036--31662109	26	2.8	25	86	8	94	31	13	12	43	1.81
31662047--31662109	26	2.5	26	89	2	101	33	11	12	42	1.78
31665771--31665796	5	5.2	5	100	0	52	80	0	0	19	0.71
31670190--31670235	9	5.3	9	89	7	60	23	0	6	69	1.11
31670201--31670236	3	12.0	3	93	0	63	30	0	2	66	1.06
31674477--31674511	8	4.4	8	89	10	54	88	0	11	0	0.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31674477--31674511	15	2.4	14	90	9	52	88	0	11	0	0.51
31674483--31674511	9	3.3	9	95	4	51	89	0	10	0	0.48
31676725--31677224	131	3.8	132	90	1	756	30	21	23	25	1.99
31677212--31677980	44	17.8	41	71	11	359	30	18	21	29	1.97
31677213--31677490	127	2.2	129	92	2	454	29	18	21	30	1.97
31677337--31677898	173	3.2	172	76	9	665	29	18	21	30	1.97
31677299--31677709	219	1.9	214	86	3	590	29	18	20	31	1.96
31677513--31677841	127	2.5	129	85	3	421	29	18	21	30	1.97
31677212--31678059	346	2.5	346	94	0	1477	30	18	21	29	1.97
31677688--31678082	218	1.8	217	94	0	700	30	19	21	29	1.97
31677301--31678143	44	19.8	41	69	11	313	29	18	21	30	1.97
31678048--31678162	41	2.9	39	70	5	122	28	15	25	30	1.96
31677999--31678162	80	2.0	80	97	0	310	27	16	24	31	1.96
31677785--31678322	298	1.8	298	84	3	751	29	18	23	27	1.98
31683785--31683820	18	2.0	18	100	0	72	27	16	0	55	1.42
31690555--31691028	240	2.0	240	98	0	923	54	10	5	28	1.57
31695960--31695996	18	2.1	18	90	5	58	48	13	0	37	1.43
31697724--31697763	19	2.1	19	86	9	55	45	2	5	47	1.38
31698347--31698380	18	1.9	17	94	5	59	41	5	5	47	1.52
31703871--31703901	14	2.2	14	94	0	53	25	12	25	35	1.92
31706174--31706360	51	3.7	50	83	3	214	31	26	15	26	1.96
31713877--31714058	51	3.6	50	82	3	195	29	25	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31724423--31724783	122	3.0	122	81	3	361	26	23	15	34	1.94
31724423--31724783	61	5.9	61	81	3	316	26	23	15	34	1.94
31734088--31734116	14	2.1	14	100	0	58	20	6	27	44	1.77
31734653--31734681	14	2.1	14	100	0	58	20	6	27	44	1.77
31733683--31734812	565	2.0	565	100	0	2260	35	12	17	34	1.88
31748879--31749269	196	2.0	195	90	2	613	31	23	14	30	1.94
31750610--31750639	15	2.0	15	100	0	60	40	6	13	40	1.71
31750614--31750647	15	2.3	15	89	0	50	44	8	11	35	1.72
31753934--31753974	19	2.2	19	86	0	64	70	4	14	9	1.30
31754017--31754051	18	1.9	18	88	0	52	77	0	22	0	0.78
31754666--31754704	16	2.4	16	87	8	53	48	2	25	23	1.63
31767367--31767442	37	2.1	37	97	0	143	34	25	17	23	1.96
31767507--31767613	50	2.1	50	87	0	160	20	32	21	25	1.97
31767523--31767660	50	2.6	50	84	6	159	24	29	20	25	1.99
31769815--31770142	109	3.0	107	84	5	392	36	9	28	25	1.87
31773526--31773559	17	1.9	18	88	5	52	23	17	32	26	1.97
31775884--31775939	15	3.6	16	92	7	98	48	37	0	14	1.44
31775884--31775939	8	7.2	8	92	8	98	48	37	0	14	1.44
31775884--31775939	23	2.4	23	100	0	112	48	37	0	14	1.44
31781253--31781300	22	2.2	22	85	7	62	64	2	4	29	1.23
31781263--31781287	13	1.9	13	100	0	50	68	0	0	32	0.90
31785103--31785147	22	2.0	22	87	8	65	51	20	0	28	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31788826--31788910	23	3.8	23	68	22	81	22	25	2	49	1.62
31798151--31798222	25	3.0	25	73	15	62	16	23	19	40	1.91
31798286--31798356	27	2.7	25	81	10	79	18	28	19	33	1.95
31807844--31808012	30	5.7	30	75	9	132	39	11	27	20	1.88
31807803--31808047	90	2.7	91	80	3	264	37	12	27	22	1.90
31807803--31808014	60	3.5	60	70	11	200	39	13	26	20	1.90
31807999--31808056	30	1.9	30	96	0	107	31	8	31	29	1.87
31807884--31808085	90	2.2	90	82	1	217	36	12	28	22	1.90
31808230--31808273	21	2.0	22	83	12	56	34	6	20	38	1.79
31809780--31809823	22	2.0	22	86	0	61	34	2	4	59	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141