genome.fa.s1.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  102  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33120307--33120475	87	1.9	87	90	2	268	35	21	14	28	1.93
33124295--33124338	23	1.9	23	85	0	61	29	2	6	61	1.34
33135560--33135666	50	2.1	50	82	3	126	25	22	27	25	2.00
33135743--33136349	100	6.1	100	91	2	936	29	21	23	25	1.99
33135732--33136316	50	11.7	50	64	2	127	29	20	24	25	1.99
33136356--33136656	44	6.9	44	73	13	194	28	19	23	28	1.98
33142098--33142130	15	2.2	15	94	0	57	48	24	12	15	1.78
33146320--33146365	24	1.9	24	90	0	74	60	4	6	28	1.40
33147055--33147085	15	2.1	15	93	0	53	61	12	0	25	1.32
33148636--33149281	89	7.4	90	72	13	399	27	23	19	29	1.98
33148644--33149284	44	14.6	45	69	16	208	27	23	19	29	1.98
33148510--33149192	217	3.1	217	91	0	1123	27	22	20	28	1.99
33148510--33149357	434	2.0	430	83	6	1084	27	23	20	29	1.99
33157964--33158007	20	2.2	20	100	0	88	18	25	15	40	1.90
33162324--33162372	25	2.0	25	87	0	71	59	8	16	16	1.60
33163055--33163088	15	2.3	15	94	0	59	64	11	0	23	1.26
33165128--33165210	39	2.1	40	95	2	150	51	21	6	20	1.68
33167236--33167304	33	2.1	33	100	0	138	40	14	15	28	1.87
33173645--33173966	175	1.8	173	88	2	493	30	14	28	25	1.95
33176654--33176711	22	2.6	22	81	7	64	39	22	5	32	1.76
33179999--33180038	19	2.2	19	86	8	57	55	17	5	22	1.61
33182799--33182901	54	1.9	54	88	4	154	32	17	8	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33182728--33183033	135	2.3	135	87	3	447	33	15	9	41	1.79
33182927--33183033	54	2.0	54	96	0	196	30	16	9	42	1.80
33185872--33185905	5	6.8	5	87	12	52	79	0	0	20	0.73
33193733--33193990	86	3.0	87	84	1	349	31	16	16	35	1.91
33194479--33194516	19	2.0	20	89	5	60	50	5	13	31	1.63
33194500--33194571	27	2.6	28	77	2	83	51	11	16	20	1.75
33199477--33199517	2	20.5	2	100	0	82	51	48	0	0	1.00
33201335--33201367	13	2.3	15	90	10	52	51	24	6	18	1.68
33201467--33201505	11	3.5	11	82	10	53	76	5	0	17	0.96
33201468--33201503	16	2.2	16	90	0	54	77	5	0	16	0.94
33203436--33203496	23	2.7	24	82	7	65	57	0	1	40	1.08
33203447--33203484	20	1.9	20	89	10	60	60	0	0	39	0.97
33203451--33203494	20	2.1	21	83	4	54	63	0	2	34	1.07
33206947--33206984	14	2.7	14	87	0	58	34	7	18	39	1.80
33206968--33207007	20	2.0	20	95	0	71	27	10	15	47	1.77
33206953--33207019	34	1.9	35	90	3	109	31	8	16	43	1.79
33209631--33209667	19	1.9	19	94	0	65	51	10	37	0	1.37
33219413--33219526	58	1.9	59	91	1	185	37	2	9	50	1.49
33233846--33233945	44	2.3	44	92	0	173	26	24	25	25	2.00
33233929--33234457	128	4.1	128	91	0	846	29	21	24	24	1.99
33239208--33239275	8	8.8	8	75	6	59	72	13	2	11	1.24
33239241--33239271	4	7.8	4	92	0	53	77	19	0	3	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33239238--33239276	12	3.2	12	88	0	60	74	15	0	10	1.07
33241251--33241701	40	10.8	40	70	14	275	23	21	23	31	1.98
33241291--33241702	87	4.9	85	70	14	278	23	20	23	31	1.98
33241198--33241752	127	4.4	127	92	0	903	23	20	23	32	1.98
33241756--33242371	100	6.2	100	88	0	851	26	22	20	29	1.99
33241762--33242376	300	2.1	299	89	1	937	26	22	21	29	1.99
33243367--33243409	5	8.6	5	80	10	52	2	16	0	81	0.79
33243351--33243409	16	3.3	18	79	18	61	1	16	1	79	0.89
33243828--33243899	19	3.9	18	78	8	74	6	9	2	80	0.99
33243828--33243898	38	1.9	36	85	5	97	7	9	2	80	1.00
33243829--33243887	27	2.2	26	88	8	84	6	10	3	79	1.03
33247254--33247321	8	8.8	8	75	6	59	72	13	2	11	1.24
33247287--33247317	4	7.8	4	92	0	53	77	19	0	3	0.90
33247284--33247322	12	3.2	12	88	0	60	74	15	0	10	1.07
33256734--33256864	69	1.9	69	85	0	181	42	4	9	42	1.58
33263539--33263578	12	3.3	12	83	13	55	15	22	40	22	1.91
33265068--33265152	43	2.0	43	100	0	170	30	17	11	40	1.86
33265470--33265511	18	2.3	18	95	0	75	9	14	11	64	1.50
33274280--33274357	38	2.1	38	92	0	129	33	34	14	17	1.90
33274836--33274875	21	1.9	21	85	10	55	22	42	0	35	1.54
33289140--33289171	3	10.7	3	100	0	64	68	0	0	31	0.90
33293830--33293879	15	3.3	15	80	0	55	42	2	16	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33296338--33296432	41	2.3	41	88	0	136	28	24	34	12	1.92
33296373--33296450	22	3.7	22	70	13	56	26	25	34	12	1.92
33299838--33299867	14	2.1	14	93	0	51	46	33	3	16	1.64
33300168--33300809	113	5.6	113	80	7	604	30	17	24	26	1.97
33302067--33302439	73	5.1	72	66	17	221	25	14	21	38	1.91
33302139--33302513	74	5.1	74	69	18	332	24	14	22	38	1.92
33302082--33302623	294	1.8	293	91	2	892	25	14	21	37	1.92
33302082--33302553	147	3.2	147	99	0	917	25	15	22	37	1.93
33303901--33303939	10	3.9	10	86	0	60	38	0	2	58	1.12
33311388--33311433	21	2.2	21	92	0	74	28	21	47	2	1.62
33311786--33311987	42	4.9	41	88	3	287	33	22	21	22	1.98
33312835--33312900	26	2.4	26	82	7	69	51	1	4	42	1.31
33314102--33314137	19	1.9	18	88	5	54	72	0	27	0	0.85
33314084--33314149	24	2.8	24	82	15	75	72	0	27	0	0.85
33314088--33314170	28	3.1	27	74	15	82	74	0	22	2	0.93
33314483--33314574	15	6.3	15	71	18	70	78	3	17	1	0.95
33314495--33314573	26	2.8	27	78	20	81	77	3	17	1	0.99
33314898--33314937	21	1.9	21	94	0	71	40	7	10	42	1.67
33315067--33315324	18	14.7	18	68	20	95	32	12	10	43	1.78
33315067--33315306	17	13.8	17	69	18	104	32	13	10	43	1.78
33315174--33315331	17	8.9	17	73	13	79	31	12	10	45	1.75
33315213--33315256	22	2.2	20	88	12	63	43	6	11	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33315141--33315324	91	2.0	91	85	8	250	33	11	10	44	1.75
33315235--33315331	51	1.9	51	81	12	119	30	11	11	46	1.75
33327212--33327848	75	8.5	74	82	7	632	29	16	18	35	1.93
33327907--33327936	15	1.9	15	93	6	51	73	6	6	13	1.24
33328183--33328314	30	4.4	29	75	7	88	35	18	4	41	1.71
33328213--33328312	30	3.4	29	80	12	105	36	18	4	42	1.69
33329419--33329443	13	1.9	13	100	0	50	80	0	20	0	0.72
33329417--33329508	16	5.2	16	75	17	62	78	3	16	2	0.98
33329420--33329508	20	4.2	20	76	18	83	77	3	16	2	1.01
33329833--33329871	20	2.0	19	90	5	60	41	5	10	43	1.61
33330088--33330130	17	2.5	17	85	7	52	32	16	6	44	1.74
33329991--33330148	18	9.2	17	70	17	105	34	13	9	42	1.76
33329991--33330149	35	4.7	33	71	18	89	34	13	9	42	1.76
33330127--33330174	25	2.0	25	95	4	89	43	8	10	37	1.69
33330153--33330211	17	3.6	16	76	15	57	27	15	11	45	1.81
33330166--33330222	17	3.5	16	79	9	62	29	15	8	45	1.77
33337246--33337291	23	2.0	23	91	0	74	47	13	8	30	1.72
33337409--33337450	13	3.3	13	78	18	52	38	2	0	59	1.10
33338655--33338699	17	2.8	16	78	18	56	51	0	2	46	1.13
33338695--33338750	19	2.8	20	81	13	62	42	3	3	50	1.37
33338720--33338766	20	2.3	20	78	7	51	42	4	0	53	1.20
33348877--33348905	12	2.4	12	100	0	58	55	31	0	13	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33353259--33353315	29	2.0	29	96	0	105	19	24	36	19	1.94
33379197--33380016	409	2.0	409	99	0	1631	28	26	20	23	1.99
33381355--33381440	9	9.8	10	70	27	54	62	1	1	34	1.10
33381374--33381440	18	3.8	17	79	13	73	64	1	0	34	1.03
33381372--33381449	28	2.9	27	81	16	90	61	2	1	34	1.18
33382359--33382417	24	2.5	24	81	13	68	32	1	3	62	1.21
33382821--33382855	17	2.1	17	100	0	70	37	22	5	34	1.78
33389376--33389419	22	2.0	22	95	0	79	38	0	20	40	1.53
33392794--33392846	22	2.3	24	81	12	67	11	11	1	75	1.13
33393048--33393100	21	2.5	21	80	14	56	28	3	5	62	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141