genome.fa.s1.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  96  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31147720--31148002	50	5.7	50	72	1	208	30	20	22	27	1.98
31147725--31148042	100	3.2	99	88	2	476	30	20	21	27	1.98
31147778--31148037	50	5.2	50	70	1	180	30	20	21	28	1.98
31147714--31148089	200	1.9	200	85	3	524	31	20	20	27	1.97
31147725--31148111	100	3.9	99	82	7	401	31	20	20	28	1.97
31148882--31148939	19	2.7	22	84	10	68	36	8	17	37	1.80
31149142--31149186	23	2.0	23	81	0	54	22	0	15	62	1.33
31157173--31157211	7	5.6	7	88	11	62	71	0	15	12	1.14
31157173--31157219	21	2.2	21	88	7	69	70	0	14	14	1.18
31157173--31157219	14	3.4	14	80	16	53	70	0	14	14	1.18
31159728--31160879	44	26.0	44	80	6	1030	31	13	22	31	1.93
31159728--31160879	133	8.7	133	82	6	1012	31	13	22	31	1.93
31161791--31161819	13	2.1	14	93	6	51	6	13	0	79	0.93
31166279--31166330	18	2.9	18	94	0	86	34	11	11	42	1.77
31168755--31168820	13	5.1	13	76	7	71	34	22	7	34	1.83
31170404--31170507	52	2.0	51	90	1	163	29	23	5	41	1.77
31177416--31177519	48	2.2	48	89	3	156	41	17	20	21	1.90
31195175--31195207	15	2.2	15	89	10	50	60	0	18	21	1.36
31198625--31198720	22	4.4	22	77	3	70	34	15	29	20	1.94
31199936--31199991	25	2.2	25	90	0	85	37	25	16	21	1.93
31202106--31202282	50	3.4	49	83	6	192	25	21	28	24	1.99
31204983--31205026	22	2.0	22	95	0	79	25	36	4	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31210431--31210555	50	2.5	50	80	0	142	25	25	29	19	1.98
31214778--31214829	25	2.1	24	86	10	70	40	0	0	59	0.97
31215321--31215364	22	2.0	23	90	4	72	50	9	4	36	1.55
31217881--31218029	75	2.0	75	97	0	280	33	22	12	32	1.91
31218569--31218593	8	3.1	8	100	0	50	24	24	0	52	1.48
31220161--31220282	23	5.3	23	87	3	174	31	25	19	22	1.98
31220161--31220282	46	2.7	46	92	0	199	31	25	19	22	1.98
31220500--31220538	18	2.2	17	86	13	53	46	20	0	33	1.51
31222092--31222450	177	2.0	176	83	11	453	44	11	6	37	1.66
31222579--31222619	21	2.0	21	85	0	55	41	2	9	46	1.50
31222701--31222728	8	3.5	8	100	0	56	53	0	0	46	1.00
31223483--31223556	10	7.1	10	80	8	67	25	4	1	68	1.15
31243441--31243510	4	17.5	4	79	5	70	21	30	2	45	1.66
31243441--31243501	16	3.8	16	86	0	86	22	31	1	44	1.63
31253783--31254127	42	8.2	42	88	0	519	21	19	24	34	1.96
31253785--31254127	126	2.7	126	93	0	578	21	19	24	34	1.96
31254986--31255391	150	2.7	149	86	7	559	41	3	10	44	1.57
31255127--31255227	53	1.9	54	82	11	129	41	2	10	44	1.55
31256001--31256067	10	6.4	10	72	14	55	19	5	2	71	1.20
31263750--31263796	23	2.0	23	84	12	60	61	2	0	36	1.08
31271978--31272025	17	2.8	17	70	0	51	45	29	16	8	1.76
31272561--31272600	14	2.9	14	88	0	53	35	7	17	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31272584--31272623	20	2.0	20	95	0	71	30	10	12	47	1.74
31272569--31272634	34	1.9	34	90	6	107	33	9	13	43	1.76
31272723--31273010	72	4.0	72	99	0	558	44	18	8	28	1.79
31282697--31282724	14	2.0	14	100	0	56	35	14	14	35	1.86
31287581--31287642	31	2.1	30	82	17	76	29	17	8	45	1.77
31287801--31287918	49	2.4	49	84	4	148	32	19	25	22	1.98
31287801--31287918	25	4.8	25	76	12	109	32	19	25	22	1.98
31289744--31289778	18	1.9	18	88	0	52	8	34	5	51	1.56
31298294--31298334	18	2.3	18	91	0	64	29	9	17	43	1.80
31298303--31298340	18	2.1	18	90	0	58	31	7	13	47	1.71
31298917--31298970	25	2.3	22	79	20	65	75	0	11	12	1.04
31305256--31305376	64	1.9	64	87	3	181	28	16	22	32	1.96
31305205--31305414	114	1.8	114	88	0	321	29	19	23	27	1.98
31306261--31306303	22	2.0	22	82	13	54	25	2	18	53	1.56
31309485--31309600	52	2.2	52	87	4	171	27	19	17	35	1.94
31310059--31310118	30	2.1	30	87	6	88	61	3	0	35	1.12
31317898--31317929	16	2.0	16	93	0	55	15	12	15	56	1.68
31321623--31321681	31	2.0	30	86	6	84	32	10	15	42	1.80
31323816--31323853	2	19.0	2	100	0	76	50	0	50	0	1.00
31327459--31327513	19	2.9	19	84	13	69	38	0	5	56	1.23
31331473--31331532	21	2.9	21	80	2	59	40	15	6	38	1.73
31332448--31332488	3	13.7	3	94	0	73	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31334742--31334813	25	2.9	25	80	0	90	26	22	22	29	1.99
31343908--31344105	103	1.9	103	80	6	231	33	9	20	36	1.84
31345761--31345796	5	7.0	5	90	3	54	75	2	22	0	0.94
31345864--31345889	3	8.7	3	100	0	52	69	0	0	30	0.89
31346890--31347957	538	2.0	538	88	2	1572	28	22	11	37	1.89
31355167--31355253	39	2.2	39	81	4	104	16	45	14	22	1.84
31361744--31361806	12	5.3	12	74	9	58	77	11	4	6	1.10
31361744--31361835	30	2.9	31	74	19	84	73	10	6	8	1.23
31362208--31362263	14	4.0	14	75	13	53	75	0	14	10	1.06
31362208--31362260	28	1.9	27	88	3	79	77	0	13	9	0.99
31363640--31364040	44	8.7	44	70	18	262	32	19	20	27	1.97
31363669--31364094	142	3.0	142	96	0	771	33	18	20	27	1.96
31363713--31363894	98	1.9	97	80	9	217	31	19	20	28	1.97
31364163--31364862	50	14.0	50	69	4	300	33	23	20	23	1.97
31364163--31364852	100	6.9	100	84	4	732	33	22	20	23	1.97
31365189--31365217	10	2.9	10	100	0	58	48	20	10	20	1.79
31365365--31365437	29	2.6	28	91	4	94	12	49	20	17	1.79
31365374--31365437	29	2.2	29	97	0	119	10	50	20	18	1.77
31373818--31373922	50	2.1	51	90	1	167	26	26	17	29	1.97
31377758--31377951	49	4.0	49	83	9	209	33	28	13	24	1.93
31377758--31377949	98	2.0	97	84	6	253	33	28	13	24	1.93
31379923--31380910	44	22.6	44	95	1	1658	30	29	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31383027--31383324	51	5.8	51	99	0	587	27	23	15	33	1.95
31386243--31386270	13	2.2	13	100	0	56	28	0	0	71	0.86
31386359--31386396	15	2.5	15	87	8	51	50	5	2	42	1.39
31392293--31392347	25	2.2	25	86	0	74	40	12	16	30	1.86
31395985--31396037	23	2.3	23	75	21	56	13	32	3	50	1.59
31398092--31398135	18	2.4	19	79	20	58	43	0	13	43	1.44
31405908--31405976	31	2.4	28	79	13	77	49	4	2	43	1.37
31415137--31415209	29	2.4	29	78	15	78	56	5	1	36	1.31
31415137--31415215	28	2.6	30	76	9	81	55	5	1	37	1.30
31420000--31420071	35	2.1	35	83	0	90	30	20	23	25	1.99
31420497--31420571	28	2.7	28	87	0	105	26	24	21	28	1.99
31423360--31423408	21	2.3	22	85	7	73	40	18	12	28	1.86
31426105--31426155	24	2.2	24	82	3	59	47	3	0	49	1.20
31426393--31426426	16	2.1	16	88	0	50	58	5	2	32	1.37
31428590--31428669	42	1.9	42	84	0	106	28	27	11	32	1.91
31429059--31429099	16	2.6	16	88	0	55	46	0	19	34	1.50
31431430--31431463	6	5.7	6	100	0	68	85	0	0	14	0.60
31431430--31431504	24	3.1	24	76	3	62	73	1	2	22	1.04
31448880--31448939	26	2.3	26	91	0	93	38	6	25	30	1.81
31450039--31450067	5	5.8	5	100	0	58	41	0	17	41	1.49
31458455--31458498	11	4.3	11	80	16	58	34	0	0	65	0.93
31458454--31458505	19	2.7	19	96	0	95	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31458466--31458505	8	4.6	8	82	17	53	35	0	0	65	0.93
31467059--31467092	17	1.9	18	88	5	52	32	32	14	20	1.93
31476175--31476346	50	3.3	50	81	4	173	22	25	23	28	1.99
31478526--31478717	95	2.0	96	98	1	377	42	11	4	41	1.62
31482535--31482600	29	2.3	28	92	7	114	34	15	24	25	1.94
31483325--31483369	22	2.0	22	100	0	90	35	13	31	20	1.91
31483430--31483705	50	5.5	50	89	1	392	24	20	32	22	1.98
31484443--31484733	50	5.8	50	80	2	282	27	21	27	23	1.99
31489614--31489925	155	2.0	155	100	0	624	30	14	17	38	1.89
31490509--31490742	50	4.7	49	83	2	279	27	20	30	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141