genome.fa.s1.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  14  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4568178--4568251	27	2.7	27	79	4	78	41	20	17	20	1.90
4568555--4568662	28	3.9	28	93	0	171	19	25	28	26	1.99
4569572--4569622	26	2.0	26	96	0	93	37	25	11	25	1.90
4579284--4579354	35	2.0	35	94	0	124	21	15	15	47	1.82
4583946--4584017	26	2.7	27	84	2	101	27	19	27	25	1.99
4585195--4585229	16	2.2	16	94	0	61	42	5	5	45	1.51
4616059--4616088	13	2.4	13	94	5	53	13	43	0	43	1.43
4618805--4619086	75	3.7	75	74	14	297	20	19	28	31	1.97
4618780--4619082	154	2.0	154	93	0	525	20	20	28	31	1.97
4621583--4621627	22	2.0	22	100	0	90	35	4	20	40	1.72
4634230--4634286	25	2.3	23	75	16	60	24	21	21	33	1.97
4641534--4641596	25	2.5	25	86	0	90	23	19	23	33	1.97
4643459--4643483	13	1.9	13	100	0	50	16	28	16	40	1.89
4643484--4644765	571	2.3	567	84	3	1700	36	21	10	31	1.87
4645428--4645471	21	2.0	21	83	12	54	52	11	0	36	1.38
4648716--4648749	9	3.7	9	88	7	50	88	2	8	0	0.62
4648723--4648750	10	2.8	10	100	0	56	92	0	7	0	0.37
4654414--4654439	13	2.0	13	100	0	52	30	23	7	38	1.83
4678378--4678420	9	4.7	9	80	5	50	74	0	2	23	0.93
4683308--4683366	15	3.8	16	84	10	77	33	15	8	42	1.77
4683308--4683347	17	2.5	17	88	8	57	32	12	7	47	1.69
4686846--4687030	102	1.8	102	86	0	271	17	21	29	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4691988--4692033	23	2.0	23	100	0	92	47	13	17	21	1.81
4693806--4693858	27	2.0	27	88	7	81	16	24	30	28	1.97
4693804--4693995	102	1.9	101	94	1	339	19	22	28	29	1.98
4698385--4698437	26	2.0	26	92	7	90	30	18	5	45	1.73
4698396--4698446	26	2.0	26	84	0	66	35	19	5	39	1.76
4727236--4728802	659	2.4	663	93	1	2616	33	11	17	38	1.85
4727236--4729184	659	3.0	659	87	4	2376	32	10	18	38	1.86
4732317--4732567	9	28.8	9	70	15	170	30	2	20	45	1.65
4732306--4732410	25	4.2	26	74	16	78	32	3	19	44	1.68
4732444--4732561	16	7.3	16	73	17	86	28	0	20	50	1.54
4732344--4732497	62	2.6	58	81	7	173	31	2	20	44	1.65
4732321--4732538	25	8.5	25	74	12	149	30	2	20	45	1.65
4732658--4732694	17	2.2	17	95	0	65	32	0	13	54	1.40
4734867--4735851	431	2.3	431	96	1	1805	31	18	15	34	1.92
4738354--4738413	30	2.0	31	83	3	77	18	38	0	43	1.50
4745337--4745369	12	2.8	12	90	0	57	39	0	6	54	1.25
4746739--4746763	8	3.1	8	100	0	50	24	12	0	64	1.27
4746878--4746904	2	13.5	2	100	0	54	48	0	0	51	1.00
4746878--4746923	10	4.5	11	83	8	53	47	0	0	52	1.00
4769227--4769284	30	1.9	30	89	0	89	41	3	24	31	1.71
4769497--4769527	13	2.4	13	94	0	53	32	0	12	54	1.38
4789038--4789087	24	2.2	22	82	13	57	68	0	12	20	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4790053--4790118	26	2.6	26	82	2	80	19	24	19	36	1.95
4798934--4798978	17	2.6	17	92	0	72	13	51	22	13	1.75
4800201--4800255	21	2.6	21	76	0	65	45	14	18	21	1.85
4802187--4802247	30	2.0	30	93	6	106	29	0	49	21	1.50
4803828--4803887	27	2.2	27	96	0	111	31	20	20	28	1.97
4813183--4813223	20	2.1	20	86	4	57	48	0	7	43	1.30
4820798--4820849	12	4.2	13	76	16	56	46	1	5	46	1.38
4820794--4820854	24	2.3	27	83	13	83	45	1	4	47	1.34
4821621--4821665	21	2.1	21	87	0	63	53	13	2	31	1.52
4826830--4826859	12	2.5	12	94	0	51	10	43	20	26	1.83
4832861--4832901	20	2.0	21	95	4	75	53	0	2	43	1.13
4837322--4837365	19	2.3	19	80	0	52	25	6	4	63	1.38
4843800--4843858	29	2.0	30	86	3	84	57	13	1	27	1.46
4846774--4846805	15	2.1	15	94	0	55	75	3	15	6	1.14
4850510--4850563	26	2.0	29	85	10	78	9	14	11	64	1.48
4851309--4851380	25	2.9	25	87	2	92	18	23	20	37	1.94
4855085--4855116	16	2.1	16	94	5	57	78	3	12	6	1.06
4858165--4858196	6	5.3	6	100	0	64	68	0	0	31	0.90
4858275--4858322	25	1.9	25	83	8	62	52	0	0	47	1.00
4860467--4860507	22	1.9	22	85	5	57	43	4	7	43	1.53
4867678--4867733	22	2.5	23	82	2	69	51	1	1	44	1.22
4867709--4867748	16	2.5	16	91	0	62	47	2	7	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4868587--4868660	33	2.3	31	82	13	87	24	31	1	43	1.63
4868587--4868662	11	7.0	11	76	19	72	25	30	1	43	1.63
4869897--4869922	7	3.7	7	100	0	52	26	0	15	57	1.38
4871996--4872053	25	2.3	25	90	0	89	41	0	12	46	1.41
4873819--4875087	635	2.0	634	85	2	1722	29	21	17	31	1.96
4875830--4876109	125	2.2	126	85	3	404	30	22	17	30	1.96
4878959--4879160	42	4.8	43	88	7	281	23	19	20	36	1.95
4879466--4879536	21	3.4	21	86	0	97	2	47	18	30	1.63
4889115--4889368	80	3.1	83	87	5	367	32	18	9	40	1.81
4891193--4891478	113	2.5	115	77	12	302	24	24	25	26	2.00
4891217--4891478	114	2.3	114	79	9	275	24	24	23	26	2.00
4891422--4891695	72	3.8	71	94	2	435	25	23	23	27	2.00
4894010--4894189	91	2.0	91	96	2	335	27	13	17	41	1.87
4895568--4895628	31	1.9	32	83	3	79	37	9	16	36	1.82
4896659--4896690	1	32.0	1	93	0	55	0	96	3	0	0.20
4897545--4897630	42	2.0	43	97	2	165	27	13	17	40	1.88
4904389--4904814	131	3.2	132	82	3	518	27	25	19	27	1.98
4904794--4905056	89	3.0	89	85	1	348	24	23	25	26	2.00
4905161--4905266	44	2.4	44	79	3	115	31	20	19	28	1.97
4905376--4905794	44	9.5	44	75	8	262	26	24	17	31	1.97
4905369--4905794	178	2.4	178	85	1	570	26	24	17	31	1.97
4905376--4905801	45	9.6	44	73	9	190	27	23	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4906090--4906165	24	3.2	24	96	0	134	27	22	14	35	1.93
4907079--4907111	9	3.8	9	88	8	50	15	0	3	81	0.80
4910359--4910405	19	2.5	20	86	6	62	42	10	21	25	1.85
4912187--4912219	15	2.1	16	88	5	50	63	0	6	30	1.18
4913249--4913296	9	5.6	9	78	9	55	33	0	0	66	0.92
4913249--4913298	17	2.9	17	85	8	66	36	0	0	64	0.94
4915988--4916056	31	2.3	31	89	2	104	42	10	10	37	1.73
4926305--4926440	45	3.0	46	81	6	145	37	14	23	24	1.92
4926875--4926920	24	1.9	24	86	0	65	67	2	6	23	1.25
4928450--4928503	22	2.5	22	77	17	67	40	5	1	51	1.36
4937790--4937966	90	2.0	90	85	3	241	37	21	9	32	1.85
4937988--4938094	19	5.5	19	77	8	99	57	0	0	41	1.05
4937972--4938104	39	3.4	39	67	8	99	60	0	2	36	1.14
4937972--4938095	19	6.4	19	74	11	90	59	0	1	38	1.07
4938065--4938103	19	2.0	19	90	5	60	61	2	2	33	1.23
4939816--4939896	38	2.1	38	86	0	108	35	17	16	30	1.92
4943351--4943403	23	2.4	22	84	12	65	35	7	13	43	1.72
4958924--4958976	25	2.1	25	96	0	97	49	13	18	18	1.80
4965944--4965994	22	2.3	22	79	0	57	33	19	13	33	1.91
4972901--4972968	20	3.5	20	73	19	54	64	0	30	4	1.13
4976032--4976085	23	2.3	23	75	12	56	18	16	20	44	1.87
4979949--4979991	22	1.9	22	81	13	52	41	16	11	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4998113--4998157	21	2.0	23	83	8	58	26	4	2	66	1.22
5008809--5009464	328	2.0	328	100	0	1312	45	12	10	31	1.76
5009853--5009883	14	2.2	14	100	0	62	45	12	6	35	1.68
5012524--5012704	90	2.0	91	98	1	355	49	4	8	37	1.54
5013917--5013954	19	2.0	19	89	0	58	52	2	0	44	1.14
5013974--5014031	30	1.9	30	86	6	82	60	1	3	34	1.24
5014539--5014727	94	2.0	94	98	0	369	34	19	15	30	1.92
5015354--5015392	19	2.0	20	85	5	53	38	0	15	46	1.46
5020117--5020199	21	4.0	21	72	0	76	15	21	19	43	1.88
5020119--5020289	42	4.1	42	80	1	157	16	22	18	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141