genome.fa.s1.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  56  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18406873--18406907	18	2.0	18	88	5	54	22	8	31	37	1.85
18406918--18406951	12	2.8	12	86	13	52	64	0	0	35	0.94
18406918--18406947	11	2.6	11	94	5	51	63	0	0	36	0.95
18406932--18406971	15	2.5	17	76	23	50	67	0	5	27	1.11
18409595--18410539	105	9.1	105	84	1	1096	23	16	22	37	1.93
18413993--18414041	25	2.0	23	84	7	62	24	12	0	63	1.29
18413984--18414043	25	2.7	22	70	20	54	23	11	0	65	1.26
18423069--18423134	23	2.9	23	88	0	96	22	19	27	30	1.98
18423066--18423141	23	3.3	23	80	12	93	23	19	26	30	1.98
18423206--18423253	23	2.0	25	84	8	64	39	0	22	37	1.55
18429621--18429743	42	3.0	41	82	5	122	16	23	17	43	1.88
18429669--18429737	21	3.3	21	72	8	59	15	24	17	42	1.88
18435878--18435964	27	3.2	27	78	0	102	37	16	25	20	1.93
18438278--18438336	31	1.9	31	89	0	91	33	25	18	22	1.96
18441322--18441386	34	1.9	34	100	0	130	21	18	15	44	1.86
18457912--18457945	16	2.1	17	94	5	61	23	17	5	52	1.66
18469614--18469652	4	9.8	4	94	0	69	25	0	23	51	1.49
18469774--18469830	26	2.2	26	81	9	62	24	7	12	56	1.61
18471367--18471406	20	2.0	20	95	0	71	25	22	2	50	1.62
18472124--18472392	137	2.0	138	80	2	308	33	26	20	20	1.97
18479205--18479272	20	3.5	18	76	11	64	58	2	5	32	1.37
18479200--18479281	9	8.7	9	73	16	51	59	2	4	32	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18479533--18479634	9	12.1	8	72	20	59	31	3	0	63	1.19
18479532--18479649	18	6.8	17	69	23	59	31	4	0	63	1.19
18479532--18479650	27	4.5	26	71	18	68	31	4	0	63	1.19
18479608--18479650	19	2.3	19	84	8	52	27	2	2	67	1.15
18480895--18480935	6	6.8	6	85	0	55	65	0	4	29	1.13
18492115--18492149	18	1.9	18	94	0	61	17	11	37	34	1.85
18494766--18494991	112	2.0	113	98	0	436	42	5	7	44	1.54
18500507--18500536	14	2.1	15	93	6	53	13	43	13	30	1.82
18504459--18504496	20	1.9	20	88	0	58	13	2	39	44	1.57
18504792--18504863	31	2.3	31	87	0	108	33	22	4	40	1.73
18514005--18514029	8	3.1	8	100	0	50	64	0	0	36	0.94
18514264--18514288	8	3.1	8	100	0	50	64	0	0	36	0.94
18513993--18514511	259	2.0	260	99	0	1031	41	12	9	36	1.75
18520608--18520650	22	2.0	22	90	0	68	9	20	25	44	1.81
18520745--18521031	43	6.7	43	75	6	174	27	30	18	23	1.98
18521375--18521419	21	2.1	21	87	0	63	6	44	15	33	1.73
18521375--18521430	21	2.7	22	74	20	57	7	42	16	33	1.75
18521416--18521568	66	2.3	66	82	5	186	15	26	16	41	1.88
18521458--18521582	66	1.9	66	86	3	180	16	24	16	43	1.87
18521777--18521836	30	2.0	30	100	0	120	36	16	16	30	1.91
18523184--18523252	12	6.1	11	79	16	52	33	0	18	47	1.49
18523280--18523348	12	6.1	11	79	16	52	33	0	18	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18523178--18525128	96	20.3	96	99	0	3823	33	0	16	49	1.53
18523376--18523444	12	6.1	11	79	16	52	33	0	18	47	1.49
18523472--18523540	12	6.1	11	79	16	52	33	0	18	47	1.49
18523568--18523636	12	6.1	11	79	16	52	33	0	18	47	1.49
18523664--18523732	12	6.1	11	79	16	52	33	0	18	47	1.49
18523760--18523828	12	6.1	11	79	16	52	33	0	18	47	1.49
18523856--18523924	12	6.1	11	79	16	52	33	0	18	47	1.49
18523952--18524020	12	6.1	11	79	16	52	33	0	18	47	1.49
18524048--18524116	12	6.1	11	79	16	52	33	0	18	47	1.49
18524144--18524212	12	6.1	11	79	16	52	33	0	18	47	1.49
18524240--18524308	12	6.1	11	79	16	52	33	0	18	47	1.49
18524336--18524404	12	6.1	11	79	16	52	33	0	18	47	1.49
18524432--18524500	12	6.1	11	79	16	52	33	0	18	47	1.49
18524528--18524596	12	6.1	11	79	16	52	33	0	18	47	1.49
18524624--18524692	12	6.1	11	79	16	52	33	0	18	47	1.49
18524720--18524788	12	6.1	11	79	16	52	33	0	18	47	1.49
18524793--18525049	12	21.5	12	68	20	78	35	1	14	49	1.51
18525134--18525174	19	2.2	19	86	8	57	51	2	0	46	1.14
18525147--18525208	29	2.1	29	85	5	81	51	1	1	45	1.20
18528050--18528079	4	7.5	4	92	0	51	26	0	0	73	0.84
18527994--18528222	113	2.0	114	96	1	424	34	8	7	49	1.62
18528163--18528192	4	7.5	4	92	0	51	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18528204--18528270	20	3.2	21	75	14	59	49	0	7	43	1.31
18528289--18528320	10	3.2	10	95	0	55	18	3	0	78	0.89
18529425--18529457	7	5.0	7	85	14	52	30	54	0	15	1.41
18529425--18529449	12	2.1	12	100	0	50	32	52	0	16	1.44
18529491--18529524	15	2.3	15	90	5	52	35	29	0	35	1.58
18529951--18530245	41	7.2	41	82	1	324	30	23	22	23	1.99
18530289--18530416	40	3.2	39	79	8	134	21	24	21	33	1.97
18534730--18534763	2	17.0	2	100	0	68	50	0	50	0	1.00
18548124--18548201	28	2.8	28	82	7	104	55	1	11	32	1.44
18548464--18548508	23	1.9	24	81	4	56	51	4	8	35	1.54
18549192--18549247	20	2.8	19	81	7	58	67	7	21	3	1.30
18549347--18549401	28	2.0	28	85	7	76	5	23	5	65	1.35
18550068--18550819	175	4.3	175	94	0	1315	28	19	17	33	1.95
18550228--18550957	46	16.5	46	75	11	533	28	20	18	33	1.96
18550402--18550913	221	2.3	225	77	8	546	28	20	18	32	1.96
18561468--18561515	25	1.9	25	82	0	60	50	10	16	22	1.76
18562496--18562573	28	2.8	28	82	7	104	56	1	10	32	1.41
18562836--18562880	23	1.9	24	81	4	56	51	4	8	35	1.54
18563559--18563626	20	3.6	19	77	11	59	69	5	22	2	1.24
18564148--18564188	16	2.5	17	80	11	50	17	0	7	75	1.02
18573632--18573671	20	2.0	21	85	5	55	30	5	5	60	1.40
18579387--18579424	17	2.2	17	95	0	67	18	5	0	76	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18580483--18580524	18	2.3	18	83	4	57	64	2	0	33	1.07
18586529--18586576	23	2.0	24	84	8	62	39	22	8	29	1.83
18587185--18587282	42	2.3	42	92	0	169	30	23	21	24	1.99
18594974--18595026	22	2.5	22	81	3	63	77	5	1	15	1.04
18595578--18595604	14	1.9	14	100	0	54	25	0	0	74	0.83
18598714--18598805	19	4.8	19	89	0	148	35	9	17	36	1.83
18598714--18598828	38	2.9	38	88	5	167	35	8	17	38	1.81
18599018--18599062	23	2.0	23	81	0	54	20	2	15	62	1.43
18605417--18605810	175	2.2	176	89	1	594	28	27	23	20	1.99
18605677--18605810	44	3.0	44	69	8	110	31	27	21	19	1.97
18605663--18605807	45	3.3	44	71	7	132	31	26	23	19	1.98
18605417--18605821	88	4.6	88	89	1	607	28	28	23	20	1.99
18605821--18605939	44	2.7	44	83	5	152	26	19	25	28	1.99
18606434--18606777	45	7.9	43	71	13	204	29	20	23	25	1.99
18606295--18606716	217	1.9	218	87	2	625	30	19	22	27	1.98
18607326--18607370	23	2.0	23	91	4	74	37	4	17	40	1.70
18607336--18607380	23	2.0	23	86	4	65	33	4	15	46	1.66
18612627--18612669	22	2.0	22	85	0	59	13	18	25	41	1.88
18612835--18612938	43	2.4	43	84	6	140	17	19	28	34	1.94
18612861--18612958	43	2.3	43	81	0	106	23	24	25	26	2.00
18612926--18613169	43	5.6	42	75	6	193	27	31	19	21	1.97
18613480--18613597	21	5.6	21	86	4	166	4	42	14	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18613480--18613597	43	2.8	42	85	5	166	4	42	14	38	1.65
18613480--18613636	21	7.4	21	81	2	154	3	40	15	39	1.66
18613480--18613655	21	8.3	21	79	5	122	3	40	16	39	1.67
18613627--18613772	66	2.2	66	86	4	197	13	28	17	39	1.88
18613666--18613796	66	2.0	66	86	3	183	16	24	18	41	1.90
18621073--18621103	16	1.9	16	93	0	53	29	51	0	19	1.47
18621972--18622313	41	8.3	41	90	2	497	31	27	26	14	1.95
18622365--18622479	40	2.9	40	76	6	126	20	26	19	33	1.96
18624283--18624334	27	1.9	28	84	7	72	53	13	13	19	1.72
18632254--18632313	26	2.3	26	88	0	93	35	21	25	18	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141