genome.fa.s1.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  49  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15649878--15649972	43	2.2	43	86	3	138	23	18	29	28	1.98
15655337--15655432	44	2.2	42	78	15	97	5	21	37	35	1.76
15655524--15655581	30	2.0	31	90	10	95	1	20	1	75	0.97
15655521--15655585	5	13.2	5	75	15	64	1	20	1	76	0.94
15655677--15655717	19	2.2	19	95	0	73	0	41	0	58	0.98
15655999--15656132	58	2.3	58	85	7	173	47	2	21	28	1.63
15656005--15656135	29	4.5	29	78	6	122	48	1	19	30	1.59
15656625--15657377	76	10.0	75	82	5	731	34	20	17	26	1.95
15656625--15657371	308	2.5	304	85	5	980	34	21	17	26	1.95
15665695--15665733	4	10.0	4	83	5	53	46	2	25	25	1.66
15669949--15669998	15	3.4	14	83	8	64	4	16	0	80	0.87
15675488--15676672	297	4.0	297	90	1	1842	26	21	17	34	1.95
15678483--15678834	43	8.2	43	81	6	342	24	28	19	27	1.99
15678478--15678817	129	2.6	128	79	8	379	24	27	20	27	1.99
15679010--15679048	19	2.1	19	95	0	69	58	2	10	28	1.44
15679152--15679200	21	2.3	21	85	0	62	4	40	18	36	1.70
15690583--15690615	17	1.9	17	93	0	57	36	24	6	33	1.80
15691158--15691439	41	6.9	41	76	4	246	33	21	25	19	1.97
15691158--15691413	82	3.1	82	85	3	311	34	21	25	17	1.96
15691537--15691567	15	2.1	15	93	0	53	9	38	32	19	1.84
15693855--15693953	12	8.6	12	69	19	52	52	3	3	41	1.32
15693857--15693951	17	5.6	18	71	22	64	52	3	3	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15693812--15693949	68	2.0	71	88	8	212	50	4	4	40	1.42
15700503--15700536	8	4.5	8	85	14	54	23	50	14	11	1.76
15700485--15700536	22	2.4	22	86	0	68	25	50	9	15	1.74
15707657--15707692	16	2.2	17	90	5	56	61	0	2	36	1.11
15710978--15711072	46	2.1	46	93	0	163	33	2	22	42	1.65
15717383--15717440	30	1.9	30	96	0	107	17	31	34	17	1.93
15718742--15718781	21	2.0	20	85	9	55	32	0	10	57	1.32
15733494--15734246	44	17.5	44	68	14	267	28	20	23	27	1.99
15733492--15734164	216	3.1	215	89	1	1016	28	20	24	27	1.99
15734050--15734252	84	2.4	87	80	8	213	29	20	21	28	1.98
15734029--15734296	128	2.1	129	92	0	439	29	19	22	28	1.98
15737605--15737644	22	1.9	21	90	10	64	67	2	5	25	1.23
15737588--15737638	25	2.0	25	85	11	68	62	3	3	29	1.31
15739655--15739748	48	2.0	48	91	0	152	29	14	15	39	1.88
15740898--15740944	22	2.1	22	84	7	60	65	6	8	19	1.41
15744002--15744054	15	3.7	14	81	18	65	62	1	0	35	1.06
15743999--15744075	30	2.4	32	81	10	88	61	3	1	33	1.23
15745252--15745432	82	2.2	82	83	6	224	31	16	17	34	1.93
15745274--15745439	82	2.0	82	87	2	235	31	17	15	36	1.91
15745481--15745788	100	3.1	100	87	1	413	26	25	20	27	1.99
15745495--15745806	50	6.2	50	70	0	210	26	26	21	26	1.99
15750802--15750864	24	2.6	24	76	16	58	60	3	15	20	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15750875--15750907	14	2.4	14	100	0	66	45	21	12	21	1.84
15754332--15754389	24	2.4	24	94	0	98	18	22	18	39	1.92
15758352--15758404	15	3.7	14	81	18	65	62	1	0	35	1.06
15758349--15758425	30	2.4	32	81	10	88	61	3	1	33	1.23
15759789--15759921	44	3.0	44	100	0	266	43	13	11	31	1.79
15766958--15766983	13	2.0	13	100	0	52	30	7	15	46	1.74
15767013--15767054	19	2.2	19	83	8	50	28	21	9	40	1.84
15769911--15769943	7	4.7	7	85	14	50	72	0	15	12	1.12
15771199--15771982	44	17.8	44	69	11	433	29	18	24	28	1.98
15771201--15772026	132	6.3	132	93	0	1337	28	19	24	27	1.98
15773731--15773787	3	19.0	3	96	0	105	33	1	0	64	1.04
15776275--15776315	18	2.3	18	86	0	55	34	2	46	17	1.61
15776988--15777030	13	3.1	14	84	12	54	60	0	0	39	0.97
15780302--15781220	46	20.0	46	99	0	1815	32	15	21	30	1.94
15782564--15782604	18	2.3	18	87	8	57	65	0	9	24	1.22
15785217--15785260	23	1.9	23	81	9	54	61	2	2	34	1.21
15787892--15787917	5	5.2	5	100	0	52	0	19	0	80	0.71
15791961--15792051	44	2.1	44	91	0	146	40	16	16	26	1.89
15792057--15792143	43	2.0	44	95	2	158	20	21	20	36	1.95
15792235--15792277	20	2.1	21	82	4	52	46	27	13	11	1.78
15797157--15797216	29	2.1	29	90	0	93	38	26	11	23	1.89
15798366--15798404	14	2.8	14	84	0	51	41	5	7	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15802506--15802622	39	3.0	39	80	7	130	35	9	12	42	1.75
15809363--15809526	82	2.0	82	91	0	265	37	13	19	29	1.90
15810928--15811026	40	2.4	41	86	8	148	31	19	31	18	1.95
15823966--15824056	30	3.0	30	88	4	121	36	19	15	28	1.92
15839101--15839131	2	15.5	2	100	0	62	48	0	0	51	1.00
15838858--15839381	272	1.9	275	89	1	822	35	4	21	38	1.74
15841815--15841841	11	2.5	11	100	0	54	0	0	7	92	0.38
15858076--15858120	22	2.2	20	92	8	72	73	2	0	24	0.95
15858077--15858138	29	2.0	31	85	14	85	69	3	1	25	1.13
15858148--15858211	21	3.1	21	72	17	55	60	1	12	25	1.40
15858453--15858502	20	2.5	21	77	9	59	48	2	0	50	1.12
15858470--15858518	19	2.6	18	87	9	62	42	0	0	57	0.99
15858471--15858518	9	4.9	10	77	12	55	43	0	0	56	0.99
15867503--15867614	42	2.6	42	80	16	131	25	19	25	29	1.99
15867516--15867628	42	2.7	41	80	14	122	25	20	28	25	1.99
15875614--15875656	21	2.0	21	86	8	61	34	0	2	62	1.08
15875792--15875847	16	3.5	16	87	0	85	28	25	7	39	1.82
15877330--15877382	27	2.0	27	100	0	106	37	15	3	43	1.64
15901577--15901629	12	4.3	12	78	4	61	79	3	11	5	1.03
15901577--15901629	25	2.2	25	89	3	81	79	3	11	5	1.03
15902018--15902042	13	1.9	13	100	0	50	32	4	24	40	1.73
15903133--15903241	44	2.5	42	86	2	137	22	18	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15904889--15905440	42	13.3	42	85	1	736	21	16	23	38	1.93
15916448--15916542	51	1.9	50	84	4	129	33	17	16	31	1.93
15920399--15920467	29	2.3	29	82	7	86	37	5	2	53	1.40
15921673--15921752	32	2.4	33	85	8	101	38	6	7	47	1.57
15921672--15921753	33	2.5	32	84	9	103	37	6	7	48	1.56
15925763--15925836	18	4.3	18	75	16	66	44	0	10	44	1.39
15927370--15927524	56	2.7	59	86	6	219	57	3	3	34	1.35
15927484--15927526	20	2.2	19	87	4	59	62	2	2	32	1.20
15929081--15929119	19	2.1	19	86	13	55	61	2	0	35	1.10
15929118--15929158	21	2.0	21	90	0	64	63	7	2	26	1.33
15930980--15931008	14	2.1	14	100	0	58	44	6	13	34	1.71
15931284--15931386	35	2.9	35	89	2	154	37	30	16	15	1.90
15932957--15932986	16	1.9	15	93	6	51	43	3	6	46	1.46
15938689--15939026	51	6.8	50	76	9	334	28	25	15	28	1.96
15938689--15939026	102	3.4	100	84	6	409	28	25	15	28	1.96
15948874--15948914	21	2.0	21	85	0	55	31	26	26	14	1.95
15948882--15948922	21	2.0	21	85	9	57	31	24	26	17	1.97
15956828--15956881	20	2.7	20	94	0	90	22	22	1	53	1.55
15957739--15957854	46	2.5	46	88	1	171	17	22	15	44	1.86
15957739--15957941	45	4.5	45	80	3	169	19	20	17	41	1.90
15957823--15957990	45	3.7	45	83	3	194	22	20	18	38	1.94
15957739--15958032	90	3.3	89	77	9	251	20	20	17	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15962552--15962613	11	5.6	11	71	7	54	20	17	6	54	1.65
15962551--15962611	22	2.8	22	75	9	61	21	18	4	55	1.60
15965192--15965299	56	1.9	55	90	1	171	41	14	7	36	1.74
15971851--15971898	14	2.9	18	74	25	61	31	10	0	58	1.32
15973990--15974094	56	1.9	55	88	2	156	41	10	8	39	1.70
15979775--15979824	20	2.6	18	76	14	55	58	2	4	36	1.29
15979841--15979889	18	2.8	18	78	6	57	63	0	4	32	1.13
15979715--15979917	9	21.4	9	65	20	51	59	1	3	34	1.27
15980339--15980413	38	2.0	38	81	5	89	32	0	5	62	1.17
15980395--15980442	21	2.3	20	75	10	51	35	2	10	52	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141