genome.fa.s1.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  61  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19909310--19909516	105	2.0	106	96	0	380	28	14	17	39	1.89
19909715--19909759	20	2.1	22	84	12	58	13	11	8	66	1.44
19913954--19914015	30	2.1	30	87	6	90	48	8	8	35	1.62
19930512--19930543	15	2.1	15	94	0	55	15	18	12	53	1.73
19935640--19935704	33	1.9	34	81	9	80	27	24	23	24	2.00
19935673--19935725	28	1.9	27	88	3	79	32	24	24	18	1.97
19936093--19936263	27	6.3	27	77	9	123	18	22	19	39	1.93
19936093--19936263	54	3.1	54	82	7	186	18	22	19	39	1.93
19936779--19936851	36	2.0	36	97	0	137	45	24	19	10	1.82
19936982--19937015	5	6.6	5	86	6	50	58	0	41	0	0.98
19943264--19943356	28	3.3	28	80	3	116	33	22	20	23	1.97
19945834--19945867	5	6.6	5	93	6	59	61	0	38	0	0.96
19948697--19948726	4	7.5	4	92	0	51	76	0	20	3	0.92
19951335--19951387	25	2.1	25	82	6	63	37	22	0	39	1.54
19958194--19958278	42	2.0	43	88	2	127	25	20	2	51	1.59
19971723--19971783	31	2.0	31	100	0	122	29	13	27	29	1.94
19972497--19972669	42	4.1	42	99	0	337	44	9	19	26	1.81
19986723--19986766	22	2.0	22	81	0	52	59	0	0	40	0.98
19989319--19989420	50	2.0	50	100	0	204	39	17	15	27	1.90
19992342--19992465	66	1.9	66	87	0	185	23	17	25	33	1.96
20000553--20000617	21	3.2	20	70	18	55	33	6	36	23	1.80
20002751--20003086	50	6.7	50	81	3	338	22	27	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20002751--20003086	150	2.2	149	82	2	379	22	27	21	28	1.99
20006684--20006725	5	8.4	5	80	19	52	42	0	16	40	1.48
20006684--20006725	16	2.8	15	80	20	52	42	0	16	40	1.48
20007054--20007152	41	2.4	41	84	0	144	18	19	29	33	1.95
20014132--20014164	17	1.9	17	100	0	66	18	12	12	57	1.64
20019353--20019388	11	3.0	13	80	19	51	30	0	0	69	0.89
20019511--20019573	30	2.1	30	94	5	110	55	15	3	25	1.55
20025560--20025591	16	2.0	16	100	0	64	31	25	37	6	1.81
20032151--20032260	44	2.6	43	76	15	118	38	26	14	20	1.91
20032237--20032286	26	1.9	26	95	0	91	30	34	18	18	1.94
20032260--20032370	41	2.7	42	88	1	161	23	27	19	29	1.98
20039567--20039805	42	5.7	41	74	12	155	28	23	18	28	1.98
20039568--20039805	41	5.7	44	75	11	128	28	23	18	28	1.98
20039568--20039723	41	3.7	44	75	15	132	31	25	17	25	1.97
20047014--20047516	150	3.3	150	89	3	771	30	9	6	53	1.58
20047817--20048021	96	2.1	96	100	0	410	26	14	6	52	1.66
20052879--20052907	14	2.0	15	93	6	51	58	0	41	0	0.98
20063864--20063911	21	2.3	21	85	7	62	29	18	10	41	1.84
20068443--20069000	50	11.1	50	74	3	467	23	21	23	31	1.98
20068425--20068997	100	5.7	100	89	1	815	23	21	23	31	1.98
20069186--20069295	44	2.5	44	86	5	134	29	26	18	26	1.98
20069243--20069918	132	5.1	132	88	1	953	28	24	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20069613--20069931	44	7.2	44	64	12	136	26	25	18	29	1.98
20069911--20070233	45	7.2	45	75	3	242	27	25	17	29	1.97
20069911--20070233	134	2.4	134	85	1	414	27	25	17	29	1.97
20071520--20071570	7	7.3	7	80	14	61	13	13	0	72	1.12
20071520--20071561	13	3.2	13	89	3	57	11	14	0	73	1.09
20072441--20072560	12	9.8	12	76	5	80	10	7	7	74	1.23
20072521--20072560	6	6.7	6	97	0	71	15	0	12	72	1.12
20072441--20072561	6	19.8	6	79	9	66	10	7	7	74	1.22
20073342--20073398	25	2.2	25	84	9	71	54	5	17	22	1.63
20077366--20077599	3	78.0	3	100	0	468	66	0	0	33	0.92
20082938--20082994	26	2.2	25	84	6	78	29	14	5	50	1.64
20084751--20084823	30	2.5	29	82	6	85	60	0	1	38	1.06
20084821--20084912	19	4.8	18	77	13	87	65	3	4	27	1.27
20084811--20084912	38	2.7	38	80	6	118	65	2	3	27	1.24
20084727--20084915	10	20.0	9	68	20	57	64	2	2	31	1.19
20085107--20085187	20	4.1	20	79	14	89	30	1	0	67	0.98
20085091--20085180	41	2.2	41	82	7	112	31	1	0	67	0.98
20085080--20085187	30	3.6	29	81	10	110	28	2	0	67	1.10
20085652--20085703	25	2.1	25	96	0	95	28	15	11	44	1.81
20089509--20089699	50	3.7	50	81	4	211	24	27	20	27	1.99
20089509--20089694	100	1.8	103	83	6	252	24	27	19	27	1.99
20092411--20092752	160	2.1	160	90	1	526	32	17	9	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20105367--20105401	15	2.3	15	90	9	54	25	25	0	48	1.51
20111554--20111669	50	2.3	50	77	5	126	20	29	22	27	1.99
20113013--20113044	5	6.4	5	100	0	64	43	0	0	56	0.99
20114982--20115012	14	2.2	14	94	0	53	48	38	0	12	1.42
20124335--20124469	45	2.9	46	70	14	116	25	20	21	33	1.97
20124431--20125398	89	10.9	89	85	2	1268	27	24	18	29	1.98
20124431--20125397	177	5.5	177	86	3	1239	27	24	18	29	1.98
20124431--20125398	266	3.6	266	87	2	1340	27	24	18	29	1.98
20126270--20126320	26	2.0	26	88	0	75	52	15	17	13	1.74
20130245--20130270	12	2.2	12	100	0	52	76	0	15	7	0.99
20140283--20140470	61	3.1	61	68	11	179	42	2	5	49	1.41
20140323--20140352	15	1.9	16	93	6	53	43	0	6	50	1.28
20140344--20140378	18	2.0	17	88	5	52	45	0	0	54	0.99
20140284--20140511	120	1.9	119	96	0	420	43	2	4	49	1.36
20140644--20140745	44	2.4	43	79	12	122	36	29	2	31	1.72
20140657--20140749	44	2.1	46	87	4	136	37	27	3	31	1.73
20140731--20140816	16	5.4	16	90	5	129	26	32	1	39	1.64
20140731--20140818	32	2.8	32	89	3	142	26	32	2	38	1.69
20141995--20142035	19	2.1	20	82	13	50	65	2	9	21	1.34
20143618--20143659	18	2.3	18	80	12	50	4	0	19	76	0.96
20146062--20146111	25	2.0	26	84	4	66	34	16	18	32	1.92
20148075--20148119	17	2.6	17	92	0	72	35	11	20	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20149603--20149701	37	2.6	39	79	14	111	39	2	6	52	1.38
20149732--20149765	12	2.8	12	83	16	52	50	0	0	50	1.00
20151876--20151974	37	2.6	39	79	14	111	39	2	6	52	1.38
20152005--20152038	12	2.8	12	83	16	52	50	0	0	50	1.00
20158032--20158159	67	1.9	67	83	3	168	23	23	23	29	1.99
20158463--20158489	7	3.9	7	100	0	54	14	0	11	74	1.08
20160515--20160649	58	2.3	58	96	0	243	37	19	8	34	1.81
20164124--20164182	24	2.5	24	76	15	61	37	16	20	25	1.93
20164149--20164194	24	1.9	24	86	0	65	30	21	19	28	1.98
20165339--20165376	20	1.9	19	89	5	58	52	2	0	44	1.14
20166113--20166245	27	5.0	27	77	9	96	18	31	21	29	1.96
20166154--20166284	27	4.9	26	80	8	120	19	31	19	29	1.96
20166169--20166293	27	4.6	27	84	0	151	20	31	18	29	1.96
20168735--20168846	40	2.8	40	81	9	104	34	23	22	19	1.96
20168751--20168847	40	2.5	37	80	14	122	38	23	20	17	1.93
20168944--20170976	82	24.7	82	97	1	3790	21	22	23	32	1.98
20170753--20170891	40	3.0	50	70	19	127	22	25	21	30	1.98
20170712--20170973	90	3.0	88	87	8	369	21	23	23	31	1.98
20170803--20171012	41	5.2	41	80	8	209	21	24	23	30	1.99
20172522--20172582	10	5.8	10	78	7	59	49	0	4	45	1.23
20172523--20172587	31	2.1	31	88	8	96	44	1	4	49	1.32
20177713--20177936	43	5.2	43	91	0	304	21	19	33	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20180657--20180690	15	2.3	15	100	0	68	50	20	20	8	1.75
20187561--20187628	21	3.2	21	80	15	70	76	1	7	14	1.07
20188136--20188194	19	3.1	19	95	2	100	37	16	8	37	1.80
20188144--20188204	19	3.3	18	88	4	61	37	16	11	34	1.85
20188623--20188729	44	2.4	44	82	3	126	30	19	20	28	1.97
20189317--20189599	44	6.4	45	75	8	199	29	25	17	27	1.97
20189364--20189590	88	2.6	89	74	5	228	29	25	16	27	1.97
20189317--20189601	132	2.2	132	94	0	498	29	24	17	28	1.97
20190968--20191001	6	5.7	6	100	0	68	0	14	0	85	0.60
20190962--20191001	12	3.3	13	93	6	59	2	12	0	85	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141