genome.fa.s1.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  54  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17503943--17503978	18	2.0	18	88	0	54	63	0	16	19	1.30
17513619--17513689	25	2.8	25	86	0	97	18	29	19	32	1.96
17519944--17520057	23	4.8	23	75	9	97	21	25	20	33	1.97
17519944--17520074	45	2.8	46	77	9	131	22	24	19	33	1.97
17519994--17520065	23	3.2	21	77	15	56	20	25	22	31	1.98
17520244--17520288	20	2.2	20	84	0	54	35	11	15	37	1.83
17521838--17521876	7	5.6	7	91	8	62	38	2	0	58	1.12
17522061--17522120	31	1.9	31	86	0	84	40	13	18	28	1.88
17522074--17522134	31	2.0	31	83	6	79	39	18	16	26	1.91
17528277--17528319	18	2.5	17	85	7	52	46	4	0	48	1.22
17531643--17531696	20	2.7	20	80	8	65	40	1	14	42	1.57
17533952--17533995	1	44.0	1	100	0	88	0	0	0	100	0.00
17537199--17537252	24	2.2	25	83	3	65	24	1	1	72	1.05
17546023--17546203	90	2.0	91	98	1	355	22	44	9	23	1.83
17550223--17550292	16	4.4	16	90	0	104	25	32	2	38	1.71
17555531--17555584	16	3.4	16	86	0	81	25	35	3	35	1.74
17560750--17560815	13	5.1	13	83	0	87	36	24	7	31	1.83
17564843--17564886	24	1.9	22	95	4	70	18	20	13	47	1.82
17564850--17564904	24	2.3	24	84	6	67	23	18	14	43	1.87
17566324--17566386	23	2.7	22	76	16	65	19	7	20	52	1.70
17570877--17570913	16	2.3	16	95	0	65	21	32	5	40	1.76
17572141--17572221	37	2.2	37	88	0	117	34	9	16	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17578009--17578044	19	1.9	18	88	5	54	25	5	0	69	1.10
17578046--17578099	21	2.6	21	79	8	65	46	3	1	48	1.30
17578073--17578128	29	1.9	29	82	13	71	46	3	3	46	1.37
17584028--17584105	30	2.5	30	89	4	111	71	2	0	25	0.98
17584051--17584106	6	9.2	6	82	9	69	78	0	0	21	0.75
17588517--17588729	104	2.0	104	95	0	381	34	11	14	39	1.81
17588956--17589009	23	2.3	23	90	0	81	44	9	1	44	1.46
17591998--17592026	13	2.1	14	93	6	51	41	20	6	31	1.79
17606991--17607045	25	2.2	25	83	0	65	29	20	10	40	1.86
17612165--17612209	22	2.1	21	84	12	56	40	2	0	57	1.11
17619405--17619475	16	4.4	16	87	0	70	40	5	23	29	1.78
17623321--17623508	33	5.7	33	73	9	116	20	17	16	45	1.86
17632461--17632724	138	1.9	138	90	3	424	44	6	9	40	1.62
17632712--17632850	75	1.9	75	86	6	201	34	11	8	45	1.71
17632768--17632809	22	2.0	22	86	13	61	40	4	9	45	1.58
17633407--17633471	27	2.4	27	86	0	103	12	18	38	30	1.88
17633407--17633498	27	3.4	27	80	5	96	15	17	35	31	1.91
17637199--17637235	17	2.2	17	95	0	65	24	2	21	51	1.61
17638779--17638964	46	4.0	46	92	0	309	34	9	26	29	1.87
17642161--17642342	90	2.0	90	100	0	364	37	17	9	35	1.83
17643086--17643130	21	2.2	20	81	11	56	48	22	4	24	1.68
17652739--17652916	95	1.9	95	96	0	329	30	11	18	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17657465--17657497	14	2.4	14	85	5	50	72	0	9	18	1.10
17660036--17660081	19	2.5	19	86	10	60	39	6	2	52	1.40
17660361--17660405	19	2.3	20	85	11	58	31	4	2	62	1.27
17665627--17665667	22	1.9	21	85	5	55	12	17	9	60	1.57
17672277--17672350	27	2.7	26	75	8	76	31	13	28	27	1.94
17672514--17672631	27	4.4	26	80	9	94	38	13	25	22	1.91
17701251--17701304	19	2.8	19	88	2	72	9	9	5	75	1.17
17701314--17701344	14	2.2	14	94	0	53	19	6	12	61	1.53
17703108--17703159	19	2.6	19	80	19	54	30	1	1	65	1.14
17708095--17708133	20	2.0	20	84	0	51	53	5	23	17	1.63
17711751--17711780	15	2.0	15	100	0	60	33	6	6	53	1.53
17713701--17713770	3	23.7	3	94	2	124	70	0	30	0	0.88
17713833--17714695	3	287.7	3	100	0	1726	66	0	33	0	0.92
17724857--17724897	20	2.0	20	90	0	64	26	14	24	34	1.94
17726287--17726321	11	3.1	11	91	4	52	37	45	0	17	1.48
17733076--17733116	20	2.0	20	90	0	64	31	14	19	34	1.92
17778416--17778490	29	2.6	29	95	0	132	26	17	22	33	1.96
17779903--17779935	7	4.7	7	100	0	66	27	0	15	57	1.38
17780556--17780595	18	2.2	18	86	0	53	17	30	7	45	1.76
17780853--17780899	21	2.2	21	85	7	60	36	36	25	2	1.68
17781261--17781324	15	4.5	15	71	11	62	45	31	1	21	1.62
17781303--17781712	22	18.8	22	83	4	508	43	31	0	24	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17781300--17781329	15	2.0	15	93	0	51	50	33	0	16	1.46
17781303--17781712	43	9.4	43	80	5	448	43	31	0	24	1.61
17781254--17781715	65	7.1	64	82	6	468	43	31	1	24	1.61
17784979--17785546	125	4.5	125	84	3	730	30	22	17	29	1.96
17784979--17785546	252	2.3	249	86	2	773	30	22	17	29	1.96
17798517--17798545	10	2.7	11	94	5	51	65	0	0	34	0.93
17798673--17798727	28	2.0	28	89	7	85	56	3	0	40	1.17
17802582--17802633	12	4.4	12	74	13	54	26	5	17	50	1.69
17802594--17802645	23	2.3	23	93	0	86	30	7	13	48	1.71
17805798--17805836	20	2.0	20	85	5	53	53	7	10	28	1.62
17806215--17806247	17	2.0	17	88	5	50	45	0	0	54	0.99
17815579--17815628	26	1.9	26	87	0	73	60	4	28	8	1.43
17815666--17815692	6	4.5	6	100	0	54	85	0	0	14	0.61
17822220--17822253	13	2.6	13	85	0	50	17	20	41	20	1.91
17833770--17833801	16	2.0	16	93	0	55	25	15	0	59	1.36
17836421--17836454	16	2.1	16	94	0	59	61	0	0	38	0.96
17840794--17841089	147	2.0	147	90	4	463	30	13	14	41	1.84
17841894--17841946	14	3.8	14	76	0	52	43	47	0	9	1.36
17841894--17841946	21	2.5	20	76	8	52	43	47	0	9	1.36
17842175--17842207	15	2.3	15	89	5	50	33	33	3	30	1.73
17842614--17842769	41	3.8	40	80	4	177	28	28	22	20	1.98
17855156--17855249	43	2.2	43	86	0	134	43	22	12	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17855818--17855844	9	3.0	9	100	0	54	33	0	0	66	0.92
17859003--17859038	18	1.9	19	88	5	56	11	5	5	77	1.10
17861530--17861575	23	2.0	23	86	0	65	34	23	4	36	1.75
17861698--17861757	24	2.4	25	78	10	61	28	5	3	63	1.31
17861776--17861840	25	2.6	26	70	7	62	50	4	1	43	1.32
17870698--17870771	37	2.0	37	100	0	148	29	10	21	37	1.88
17871533--17871567	18	1.9	18	88	0	52	17	48	0	34	1.47
17872044--17872074	5	6.4	5	96	3	55	64	19	0	16	1.29
17872370--17872409	6	6.3	6	94	5	62	15	20	0	65	1.28
17873741--17873934	97	2.0	96	96	1	361	36	30	10	22	1.88
17882521--17882570	17	2.9	17	93	0	91	24	26	8	42	1.82
17889203--17889242	6	6.7	6	100	0	80	15	0	0	85	0.61
17897214--17897249	18	2.0	18	94	0	63	58	0	0	41	0.98
17905387--17905418	16	2.1	15	94	5	55	43	12	12	31	1.80
17914377--17914421	6	7.2	6	87	7	54	17	22	0	60	1.37
17914377--17914421	13	3.6	12	82	8	54	17	22	0	60	1.37
17914377--17914421	19	2.4	19	85	7	56	17	22	0	60	1.37
17914492--17914539	19	2.6	19	90	3	71	14	16	0	68	1.21
17927703--17927882	93	1.9	96	87	3	267	42	2	16	37	1.63
17928468--17928510	18	2.4	18	88	0	59	44	9	27	18	1.80
17929165--17929190	7	3.7	7	100	0	52	57	15	0	26	1.38
17930366--17930400	11	3.2	11	91	0	61	40	0	34	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17933351--17933394	23	1.9	23	95	0	79	13	25	6	54	1.63
17933399--17933426	2	14.0	2	100	0	56	50	0	0	50	1.00
17933671--17933714	23	1.9	23	95	0	79	13	25	6	54	1.63
17940267--17940291	12	2.1	12	100	0	50	28	32	16	24	1.96
17940392--17940455	21	3.0	21	79	2	74	20	28	17	34	1.95
17946124--17946162	20	2.0	20	90	10	62	28	12	33	25	1.93
17948106--17948147	22	1.9	22	90	0	66	38	0	16	45	1.48
17953205--17953383	60	2.9	62	84	6	238	43	16	5	35	1.70
17953153--17953398	63	3.9	63	79	6	248	43	16	5	34	1.71
17955628--17955658	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141