genome.fa.s1.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  104  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33675546--33675986	134	3.3	134	82	5	516	43	21	16	18	1.88
33678112--33678148	3	12.3	3	88	0	56	32	5	29	32	1.80
33681376--33681447	26	2.8	28	82	14	75	69	0	6	23	1.12
33681401--33681447	13	3.5	13	91	8	69	74	0	8	17	1.05
33681379--33681430	22	2.4	21	81	9	59	67	0	3	28	1.08
33685418--33685470	20	2.7	20	78	0	70	22	39	28	9	1.85
33686227--33686283	29	2.0	29	86	6	80	45	3	0	50	1.18
33686241--33686286	15	3.2	15	76	17	53	43	2	0	54	1.12
33689955--33689991	13	2.9	13	88	4	58	24	27	5	43	1.76
33690436--33690513	39	2.0	39	92	0	129	51	8	7	32	1.62
33698741--33698783	17	2.3	18	80	15	52	32	9	9	48	1.67
33709841--33709876	18	2.0	18	88	0	54	30	8	25	36	1.85
33718242--33718268	9	3.0	9	100	0	54	33	22	0	44	1.53
33722740--33722764	11	2.3	11	100	0	50	36	0	16	48	1.46
33734766--33734922	43	3.6	42	79	3	152	29	15	22	31	1.95
33748637--33748800	82	2.0	82	93	0	283	36	18	10	33	1.86
33749055--33749109	16	3.4	16	92	0	92	38	7	25	29	1.83
33749287--33749442	58	2.7	59	80	7	167	50	3	1	44	1.28
33749355--33749393	10	3.9	10	82	0	51	53	0	0	46	1.00
33749355--33749405	20	2.4	22	90	9	88	50	1	0	47	1.12
33749653--33749691	14	2.8	14	80	0	51	41	12	10	35	1.77
33752496--33752520	12	2.1	12	100	0	50	24	36	24	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33752681--33752706	9	2.9	9	100	0	52	34	34	7	23	1.83
33753785--33754376	113	5.4	111	83	9	686	48	7	6	36	1.59
33753841--33754377	212	2.5	214	82	9	628	47	8	7	36	1.61
33754042--33754377	110	3.1	110	83	6	398	47	8	7	36	1.62
33759255--33759296	20	2.0	22	86	9	61	26	19	30	23	1.98
33760001--33760040	19	2.0	19	85	9	53	47	5	0	47	1.24
33760653--33760687	16	2.2	16	89	0	52	48	0	0	51	1.00
33760799--33760849	24	2.0	24	81	11	57	60	0	7	31	1.25
33760747--33761055	153	2.0	154	99	0	611	48	6	11	33	1.65
33760952--33761002	24	2.0	24	81	11	57	60	0	7	31	1.25
33761811--33761844	15	2.3	15	89	0	50	50	11	2	35	1.54
33773260--33773402	71	2.0	71	100	0	286	39	22	8	29	1.83
33776722--33776760	11	3.5	11	82	0	51	25	12	2	58	1.47
33776713--33776769	22	2.6	22	72	10	53	19	12	3	64	1.40
33778777--33778902	47	2.7	46	82	2	153	39	6	15	38	1.73
33778955--33779132	47	3.7	47	76	10	196	39	6	17	36	1.76
33778932--33779147	100	2.2	100	94	0	387	39	6	14	39	1.70
33779277--33779430	41	3.8	41	90	0	218	18	20	29	32	1.96
33779277--33779449	82	2.1	82	82	0	202	19	19	27	34	1.95
33782156--33782197	21	2.0	21	95	0	75	30	9	16	42	1.80
33784534--33784573	21	1.9	21	94	0	71	32	10	15	42	1.79
33787024--33787140	45	2.6	45	88	0	162	34	15	21	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33787018--33787175	45	3.6	43	80	6	147	34	15	21	28	1.94
33787247--33787329	34	2.4	34	86	4	114	46	15	9	27	1.77
33794796--33794882	23	3.8	22	73	10	77	33	19	27	19	1.96
33800587--33800647	31	1.9	31	83	9	79	11	22	11	54	1.68
33801194--33801296	50	2.1	50	81	7	120	20	30	33	15	1.94
33807148--33807177	14	2.1	14	93	0	51	16	43	0	40	1.48
33812189--33812224	11	3.3	11	88	0	54	13	2	2	80	0.93
33839109--33839176	12	5.8	12	72	17	54	38	1	1	58	1.16
33839136--33839176	6	7.0	6	89	10	59	36	0	0	63	0.95
33844429--33844465	9	4.1	9	89	0	56	45	10	10	32	1.74
33845493--33845518	5	5.2	5	100	0	52	19	19	19	42	1.90
33862088--33862131	14	2.8	16	86	10	56	31	0	4	63	1.14
33867126--33867264	48	3.1	48	64	28	133	48	8	5	37	1.58
33867108--33867274	85	2.0	85	100	0	334	49	7	5	37	1.56
33870569--33870594	13	2.0	13	100	0	52	61	15	15	7	1.55
33874855--33874919	4	15.8	4	73	23	55	24	4	0	70	1.06
33874854--33874919	14	5.2	12	79	13	71	24	4	0	71	1.05
33886924--33886958	13	2.6	14	86	9	54	54	37	0	8	1.31
33887493--33887542	22	2.3	22	92	0	82	6	26	46	22	1.74
33888065--33888136	10	7.9	9	73	22	53	23	4	0	72	1.02
33888069--33888129	4	14.5	4	75	21	54	24	4	0	70	1.07
33888069--33888136	16	4.2	15	77	20	66	25	4	0	70	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33888300--33888333	10	3.6	9	88	11	50	20	2	2	73	1.09
33889710--33889772	31	2.0	31	96	0	117	28	20	19	31	1.97
33891820--33891865	18	2.5	18	85	3	56	34	15	15	34	1.89
33891906--33891942	9	4.1	9	92	0	65	45	13	10	29	1.77
33892740--33892778	5	7.8	5	100	0	78	20	20	20	38	1.94
33896445--33896482	11	3.3	12	82	14	53	36	0	0	63	0.95
33896581--33896643	30	2.1	30	93	0	108	57	14	3	25	1.52
33896969--33897031	30	2.1	30	93	0	108	57	14	3	25	1.52
33903576--33903991	208	2.0	209	94	0	735	31	19	22	25	1.98
33906125--33906185	25	2.4	25	81	10	72	39	3	0	57	1.15
33913243--33913286	6	7.2	6	81	2	52	0	56	0	43	0.99
33913243--33913286	18	2.4	18	92	3	70	0	56	0	43	0.99
33913348--33913405	14	4.2	13	77	18	55	3	31	3	62	1.29
33913346--33913395	25	2.0	25	88	7	75	4	30	4	62	1.32
33915739--33915777	20	2.0	20	94	0	69	48	0	2	48	1.15
33915864--33915929	34	1.9	35	90	3	107	48	13	6	31	1.67
33917284--33917317	15	2.3	15	94	0	59	64	17	0	17	1.29
33919118--33919241	45	2.8	45	81	0	122	25	24	20	29	1.99
33919760--33920305	44	12.9	43	76	10	439	29	24	16	29	1.97
33919802--33920223	170	2.5	169	88	2	623	29	23	16	30	1.96
33919719--33920305	126	4.6	128	81	7	535	29	24	16	29	1.97
33919761--33920304	170	3.2	165	82	6	560	29	24	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33920305--33920622	88	3.6	87	90	0	465	19	23	28	27	1.98
33920470--33920682	44	4.8	45	70	13	120	22	24	24	28	1.99
33920603--33920759	44	3.5	45	83	2	192	29	25	17	27	1.98
33929427--33929470	3	14.7	3	100	0	88	65	0	0	34	0.93
33930461--33930508	19	2.6	19	83	3	62	35	2	12	50	1.52
33932040--33932123	42	2.0	42	95	0	150	29	8	13	48	1.71
33933757--33933816	31	1.9	31	96	0	111	30	5	13	51	1.62
33936980--33937106	59	2.1	60	91	4	204	49	15	12	22	1.78
33938159--33938197	13	3.1	13	81	3	53	38	15	7	38	1.76
33945539--33945564	9	2.9	9	100	0	52	53	11	0	34	1.37
33947060--33947093	18	2.0	16	88	11	50	44	0	2	52	1.16
33948967--33949016	23	2.1	24	85	3	66	20	6	14	60	1.55
33949622--33949661	2	20.0	2	94	0	71	47	0	0	52	1.00
33966413--33966452	20	2.0	20	90	0	62	42	17	7	32	1.77
33971624--33971691	27	2.5	27	87	0	109	41	4	11	42	1.61
33973117--33973144	13	2.2	13	100	0	56	32	17	0	50	1.47
33975672--33976046	184	2.0	185	90	1	590	36	9	16	38	1.81
33975889--33975923	18	1.9	18	88	0	52	42	14	20	22	1.88
33975932--33975970	20	1.9	21	89	5	62	28	5	17	48	1.68
33985139--33985173	5	7.2	5	90	3	54	22	20	34	22	1.97
33985416--33985597	76	2.5	70	85	10	274	33	11	13	41	1.81
33985431--33985582	76	2.0	76	98	0	295	34	10	14	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33986326--33986371	22	2.1	23	84	8	60	34	2	2	60	1.21
33995865--33995899	15	2.4	15	90	4	54	48	0	8	42	1.33
34008206--34008232	13	2.1	13	100	0	54	77	7	7	7	1.12
34008200--34008346	34	4.1	35	80	10	136	71	8	9	10	1.32
34008219--34008300	22	3.9	22	75	9	75	71	8	9	9	1.30
34008219--34008339	62	2.0	62	96	0	224	71	9	9	9	1.33
34008285--34008358	6	12.7	6	81	5	53	68	9	9	12	1.38
34008235--34008339	28	3.5	28	80	14	129	71	8	10	9	1.31
34008343--34008391	6	7.7	6	88	8	53	79	0	16	4	0.88
34008355--34008391	14	2.7	14	91	4	58	83	0	16	0	0.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141