genome.fa.s1.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  23  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7467755--7467800	23	2.0	23	100	0	92	13	8	34	43	1.74
7467955--7468105	43	3.5	42	78	4	149	27	27	17	27	1.97
7473784--7474315	9	59.8	9	69	16	258	33	2	19	44	1.62
7473773--7473877	25	4.2	25	83	11	142	34	1	19	44	1.61
7474024--7474088	28	2.3	28	94	0	112	35	4	15	44	1.67
7474115--7474209	12	7.6	12	72	21	79	29	2	22	46	1.63
7474300--7474392	38	2.4	39	90	1	152	44	1	11	43	1.48
7474368--7474415	23	2.1	23	96	0	87	39	0	16	43	1.48
7474446--7474497	13	4.0	13	77	5	52	46	3	7	42	1.51
7475875--7475915	21	2.0	21	100	0	82	48	24	14	12	1.78
7476570--7476913	146	2.3	147	81	3	372	35	22	15	26	1.94
7476570--7476979	147	2.8	147	79	4	337	35	23	15	25	1.94
7478314--7478442	68	1.9	70	85	6	183	47	22	0	29	1.57
7479671--7479747	38	2.0	38	94	0	136	53	25	2	18	1.57
7479880--7479942	17	3.5	17	71	12	63	33	3	14	49	1.59
7479860--7479944	37	2.3	37	88	8	120	32	3	15	48	1.62
7479877--7479948	37	1.9	37	97	0	135	33	2	16	47	1.61
7484922--7484974	21	2.5	21	81	0	61	28	3	33	33	1.75
7485090--7485175	34	2.9	28	80	20	111	23	0	26	50	1.50
7485098--7485165	34	2.0	34	97	0	127	22	0	30	47	1.52
7486727--7486764	3	12.7	3	100	0	76	65	0	34	0	0.93
7486896--7486936	3	13.7	3	100	0	82	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7493715--7493777	33	1.9	32	81	9	74	46	4	0	49	1.23
7501992--7502120	43	3.0	42	77	13	129	29	27	19	24	1.98
7505230--7505292	29	2.1	30	82	8	76	17	6	6	69	1.31
7513056--7513106	6	8.5	6	86	0	66	31	43	5	19	1.75
7514784--7514830	16	3.1	16	81	9	62	63	0	2	34	1.06
7517972--7518019	24	2.0	24	83	0	60	29	8	12	50	1.69
7528226--7528261	18	2.1	17	94	5	63	44	11	8	36	1.70
7531485--7531526	2	21.0	2	90	0	66	45	0	4	50	1.23
7531841--7531871	4	7.8	4	100	0	62	51	0	0	48	1.00
7532632--7532662	2	15.5	2	93	0	53	48	3	0	48	1.17
7532889--7533060	86	2.0	86	91	2	283	40	22	15	22	1.91
7533499--7533527	6	4.8	6	100	0	58	82	0	0	17	0.66
7537396--7537478	42	2.0	42	92	0	139	37	8	27	26	1.85
7540006--7540117	25	4.5	25	76	9	79	23	21	25	30	1.99
7547960--7548004	22	2.0	22	82	4	54	40	17	4	37	1.70
7560133--7560164	16	2.0	16	100	0	64	31	6	12	50	1.65
7566132--7566172	21	2.0	21	85	0	55	39	19	2	39	1.65
7568039--7568064	13	2.0	13	100	0	52	38	7	7	46	1.61
7568189--7568247	25	2.4	24	80	2	64	20	30	22	27	1.98
7568368--7568430	25	2.5	24	77	7	72	22	22	20	34	1.96
7568453--7568502	25	2.0	26	84	4	66	18	26	16	40	1.90
7570075--7570133	25	2.4	25	88	0	82	27	18	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7570160--7570218	25	2.4	25	74	5	66	32	23	25	18	1.97
7570173--7570251	25	3.2	25	75	13	72	34	20	27	17	1.95
7575150--7575186	18	1.9	19	89	10	58	21	0	0	78	0.75
7596384--7596442	2	29.5	2	100	0	118	50	0	0	49	1.00
7597846--7597903	21	2.8	21	83	0	80	22	8	34	34	1.85
7602070--7602103	14	2.4	14	90	5	50	52	11	5	29	1.61
7603964--7604096	68	2.0	68	96	0	248	32	12	15	40	1.83
7604591--7604624	15	2.3	15	90	10	52	32	0	11	55	1.36
7606066--7606095	15	2.0	15	93	0	51	50	0	0	50	1.00
7613208--7613232	2	12.5	2	100	0	50	48	0	0	52	1.00
7613615--7613645	4	7.8	4	92	0	53	77	3	0	19	0.90
7615967--7616007	21	1.9	21	85	5	55	29	2	7	60	1.36
7622620--7622703	3	28.0	3	100	0	168	0	33	0	66	0.92
7624686--7624725	20	2.0	20	100	0	80	30	20	25	25	1.99
7624856--7624885	15	2.0	15	93	0	51	30	0	26	43	1.55
7627106--7627262	59	2.7	58	89	2	251	20	19	23	36	1.95
7636343--7636427	9	9.2	9	71	19	50	36	1	3	58	1.23
7636367--7636430	9	6.9	9	75	12	58	39	1	4	54	1.31
7640553--7640627	30	2.5	30	82	6	89	58	6	1	33	1.32
7641923--7641951	9	3.2	9	100	0	58	44	0	34	20	1.52
7653405--7653446	18	2.4	17	84	11	57	35	2	0	61	1.09
7666650--7666674	9	2.8	9	100	0	50	56	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7667812--7667898	29	2.8	30	86	10	106	66	1	2	29	1.11
7667812--7667899	33	2.9	31	85	8	110	65	1	2	30	1.12
7667819--7667917	30	3.2	29	78	9	92	62	1	2	34	1.13
7675540--7675580	15	2.7	15	88	0	55	2	46	0	51	1.14
7675588--7675625	9	4.2	9	93	0	58	13	36	15	34	1.87
7675583--7675625	18	2.4	18	84	0	59	13	39	13	32	1.85
7685632--7685706	36	2.0	38	87	5	109	34	1	0	64	1.02
7686314--7686362	16	3.1	16	93	0	80	36	4	34	24	1.75
7686342--7686450	45	2.6	43	80	12	129	33	4	29	32	1.78
7686576--7686617	15	2.7	16	82	14	52	52	2	0	45	1.13
7686585--7686626	15	2.9	15	82	10	52	52	0	0	47	1.00
7686792--7686839	26	1.9	25	84	16	64	52	2	0	45	1.12
7686747--7686975	92	2.5	92	83	8	236	47	3	3	44	1.38
7690002--7690059	28	2.1	28	96	0	107	60	6	29	3	1.39
7689967--7690113	66	2.2	66	92	0	240	63	6	25	4	1.37
7689972--7690134	66	2.6	61	84	9	236	60	8	26	4	1.45
7689967--7690113	38	4.1	38	74	19	111	63	6	25	4	1.37
7690076--7690120	23	2.0	23	95	0	81	62	6	28	2	1.33
7693300--7693363	26	2.5	26	87	5	85	18	26	21	32	1.97
7695087--7695146	29	2.1	29	84	6	77	31	13	6	48	1.68
7699311--7699337	12	2.2	12	100	0	54	14	7	25	51	1.68
7708728--7708758	13	2.4	13	100	0	62	41	9	6	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7711355--7711389	18	2.0	17	94	5	61	80	0	20	0	0.72
7712210--7712452	110	2.3	109	84	9	304	29	16	17	36	1.92
7712457--7712488	16	2.0	16	93	0	55	0	21	0	78	0.76
7713697--7713728	16	2.0	16	93	0	55	78	0	21	0	0.76
7713781--7713950	82	2.0	82	80	10	189	34	15	19	30	1.93
7714692--7714716	13	1.9	13	100	0	50	32	0	0	68	0.90
7714698--7714862	83	2.0	85	91	3	271	32	9	13	44	1.76
7714794--7715004	112	1.9	110	82	5	264	31	16	15	36	1.90
7718405--7718455	22	2.3	22	86	3	66	35	3	1	58	1.28
7728691--7728730	19	2.0	20	85	4	55	25	20	7	47	1.75
7730629--7730666	19	2.0	19	90	10	60	15	21	5	57	1.57
7742733--7742770	19	2.0	19	89	0	58	18	15	7	57	1.62
7743714--7743745	14	2.4	14	94	5	57	68	0	18	12	1.20
7744118--7744142	13	1.9	13	100	0	50	12	24	8	56	1.62
7744890--7745483	132	4.5	132	92	1	976	29	18	24	28	1.98
7745136--7745317	44	4.1	44	65	8	109	28	21	25	25	1.99
7745538--7745714	44	4.1	43	70	10	137	28	23	22	25	1.99
7747228--7747290	27	2.3	27	81	10	67	33	9	0	57	1.31
7750516--7750587	27	2.6	27	82	6	92	44	9	1	44	1.45
7750652--7750718	27	2.5	27	82	0	80	22	26	34	16	1.95
7750765--7750880	18	6.5	17	76	13	76	65	0	33	0	0.99
7750767--7750838	10	6.6	10	73	17	54	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7750767--7750868	24	4.3	23	71	11	73	66	0	33	0	0.92
7750770--7750843	14	5.1	13	71	25	51	68	0	31	0	0.89
7750770--7750849	34	2.8	28	75	24	85	67	0	32	0	0.91
7750785--7750891	38	2.9	38	90	5	168	65	0	33	0	0.99
7750787--7750887	10	10.5	10	72	16	79	65	0	33	0	1.00
7751743--7751768	13	2.0	13	100	0	52	61	15	0	23	1.33
7753146--7753182	19	2.0	19	89	5	58	8	21	45	24	1.78
7756991--7757039	3	16.3	3	100	0	98	67	0	0	32	0.91
7757353--7757435	27	3.1	27	76	0	85	14	42	20	22	1.88
7757488--7757555	27	2.6	26	82	13	86	52	0	5	41	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141