genome.fa.s1.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  94  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30590379--30590420	22	2.1	19	86	13	57	45	0	0	54	0.99
30590379--30590417	16	2.5	15	83	8	51	46	0	0	53	1.00
30597542--30597617	27	2.8	27	84	4	91	18	25	23	32	1.97
30599935--30600021	27	3.2	27	91	0	138	44	22	18	13	1.85
30600365--30600442	33	2.3	33	84	4	93	24	24	23	28	2.00
30605380--30605410	11	2.8	11	90	0	53	38	0	0	61	0.96
30611368--30611724	46	8.2	46	81	13	459	34	15	20	29	1.93
30611404--30611558	36	4.0	36	75	15	148	37	14	19	28	1.91
30611368--30611696	82	3.9	82	86	9	480	35	14	20	29	1.93
30619933--30619986	28	1.9	28	88	0	81	29	24	27	18	1.98
30620203--30620468	32	8.4	32	75	6	209	36	22	20	20	1.96
30620228--30620468	96	2.5	95	76	6	236	35	24	20	19	1.96
30620701--30621223	27	19.5	27	82	4	542	23	22	19	34	1.97
30622705--30622834	63	2.0	64	88	4	192	46	4	20	28	1.71
30643199--30643236	18	2.0	19	90	10	60	28	0	7	63	1.23
30647071--30647152	27	3.1	27	67	22	84	30	7	12	50	1.67
30647059--30647134	24	3.0	23	67	22	55	28	6	13	51	1.65
30647059--30647173	51	2.3	51	98	0	221	30	6	12	50	1.66
30647080--30647161	27	3.1	27	67	22	84	31	8	10	48	1.68
30648056--30648130	35	2.1	35	100	0	150	18	8	21	52	1.71
30648760--30648807	20	2.5	20	82	3	62	20	20	2	56	1.53
30662821--30662873	20	2.5	21	81	6	63	37	20	18	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30662941--30662965	12	2.1	12	100	0	50	8	8	24	60	1.52
30680628--30680688	20	3.2	20	65	25	60	45	3	19	31	1.66
30680622--30680694	36	2.0	36	100	0	146	43	2	19	34	1.65
30684515--30684610	24	4.0	24	78	2	95	31	27	15	26	1.96
30700507--30700541	16	2.2	16	94	0	61	25	8	31	34	1.86
30700700--30700726	14	1.9	14	100	0	54	29	0	0	70	0.88
30709086--30709113	8	3.5	8	100	0	56	50	0	10	39	1.37
30710667--30711129	36	12.7	36	75	8	361	37	14	22	25	1.93
30710667--30711129	73	6.4	71	80	6	464	37	14	22	25	1.93
30710696--30711129	219	2.0	218	83	4	543	36	14	23	25	1.93
30711237--30711275	7	5.9	7	93	6	64	71	0	0	28	0.86
30716327--30716538	27	7.8	27	79	3	201	40	18	22	19	1.92
30716329--30716538	54	3.9	54	84	2	242	40	18	21	19	1.92
30716328--30716566	27	8.8	26	73	10	113	39	19	21	20	1.93
30716754--30716827	26	2.8	26	87	0	112	17	21	22	37	1.94
30723774--30723956	27	6.8	27	83	5	226	43	19	19	17	1.88
30723774--30723956	54	3.4	54	86	1	260	43	19	19	17	1.88
30723777--30723987	81	2.6	81	84	4	230	43	19	17	19	1.88
30725988--30726788	140	5.8	140	80	5	898	31	20	19	28	1.97
30733579--30733980	129	3.1	129	83	6	502	41	9	5	43	1.62
30733716--30733989	138	2.0	138	89	0	424	40	10	5	42	1.63
30736345--30736818	234	2.0	234	97	0	894	33	12	22	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30741443--30741512	20	3.5	20	78	3	70	42	15	30	11	1.82
30741478--30741526	20	2.5	20	86	3	64	48	16	26	8	1.73
30748717--30748757	21	1.9	22	85	14	59	56	7	0	36	1.27
30762757--30763229	44	10.7	45	79	2	465	28	15	24	31	1.96
30762759--30763229	133	3.5	133	93	0	773	28	15	24	30	1.96
30762757--30763227	89	5.3	89	79	3	468	28	15	24	31	1.96
30774969--30775017	21	2.6	18	78	12	53	67	2	6	24	1.24
30782997--30783465	27	17.3	27	86	4	588	42	19	19	17	1.89
30783650--30783700	26	2.0	26	84	0	66	17	19	19	43	1.89
30786752--30786999	27	9.3	26	77	8	230	43	19	18	17	1.88
30786752--30787000	54	4.6	54	82	6	276	43	19	18	17	1.88
30786752--30786999	107	2.3	107	85	5	322	43	19	18	17	1.88
30787185--30787247	26	2.4	26	89	0	99	17	22	20	39	1.92
30787353--30787438	30	2.7	32	70	17	79	23	22	25	29	1.99
30789306--30789419	60	1.9	60	96	0	210	27	17	20	35	1.95
30791662--30791757	50	1.9	50	82	0	120	29	21	29	19	1.98
30792059--30792097	20	2.0	20	85	10	53	56	5	20	17	1.60
30796353--30796378	10	2.6	10	100	0	52	42	0	7	50	1.31
30798259--30798303	13	3.5	13	84	0	63	51	13	8	26	1.70
30808616--30808759	54	2.7	51	79	13	139	37	21	19	21	1.94
30808616--30808759	27	5.4	27	77	5	123	37	21	19	21	1.94
30808797--30808838	13	3.4	13	77	12	52	21	7	21	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30808788--30808838	24	2.1	24	92	0	84	19	9	21	49	1.77
30809394--30809444	25	2.0	25	84	0	66	23	13	23	39	1.91
30820985--30821150	85	2.0	85	93	0	287	39	10	18	32	1.84
30822467--30822568	41	2.5	41	80	3	116	29	18	24	27	1.98
30823711--30823742	16	2.1	16	94	5	57	68	0	0	31	0.90
30824601--30824674	37	2.0	37	94	0	130	24	18	27	29	1.98
30830579--30830613	18	1.9	18	94	0	61	31	20	17	31	1.95
30831957--30832044	41	2.1	41	87	4	124	30	19	21	28	1.97
30831976--30832057	41	2.0	41	85	0	110	31	19	19	29	1.96
30843434--30843756	168	1.9	168	84	5	438	26	22	17	34	1.95
30857093--30857152	25	2.3	26	83	8	70	60	1	5	33	1.29
30857789--30857822	17	1.9	18	88	5	52	79	2	11	5	1.02
30861013--30861054	21	2.0	21	81	9	50	52	0	28	19	1.46
30871225--30871384	48	3.3	47	86	3	194	31	18	14	35	1.91
30871250--30871399	48	3.1	48	86	2	203	34	19	14	32	1.91
30872189--30872226	17	2.3	17	86	13	53	23	0	5	71	1.07
30881062--30881109	24	2.0	24	88	12	71	64	4	0	31	1.12
30882235--30882320	14	6.2	14	76	2	84	31	31	0	37	1.58
30882218--30882307	7	13.0	7	75	2	74	32	33	0	34	1.58
30882235--30882304	27	2.6	27	88	2	95	30	34	0	35	1.58
30882270--30882320	21	2.5	21	83	3	59	31	31	0	37	1.58
30882350--30882388	20	2.0	20	85	10	53	17	12	2	66	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30887589--30887628	20	2.1	19	86	9	55	55	0	7	37	1.29
30890681--30890731	22	2.5	20	81	9	57	31	23	1	43	1.65
30890683--30890725	22	2.0	21	86	4	59	25	25	2	46	1.65
30890899--30891025	37	3.2	40	76	7	134	33	24	18	24	1.97
30891871--30891933	25	2.8	21	74	21	65	1	33	0	65	1.03
30891880--30891947	25	2.7	25	80	6	75	1	32	0	66	1.01
30891877--30891944	21	3.0	21	72	18	57	1	33	0	64	1.02
30891978--30892015	5	7.8	5	94	5	69	57	0	0	42	0.98
30891998--30892077	38	2.1	37	86	2	106	43	2	2	51	1.28
30899558--30899601	16	2.8	15	83	10	52	47	0	11	40	1.39
30900356--30900579	40	5.6	40	90	0	306	16	27	20	36	1.93
30900392--30900537	20	7.3	20	64	11	84	16	30	19	32	1.94
30906601--30906626	5	5.2	5	100	0	52	80	0	19	0	0.71
30910005--30910061	27	2.2	26	81	9	62	33	1	5	59	1.30
30911237--30911309	33	2.2	33	97	2	137	8	31	19	41	1.81
30912787--30912829	18	2.5	17	79	20	54	58	0	0	41	0.98
30913402--30913448	20	2.4	20	85	3	60	12	17	0	70	1.17
30915578--30915620	9	4.6	9	80	11	50	69	0	6	23	1.12
30916811--30916847	18	2.1	18	89	0	56	70	0	10	18	1.16
30920199--30920250	27	1.9	27	88	0	77	17	23	21	38	1.93
30928296--30928402	20	5.3	20	71	5	81	12	30	18	38	1.88
30939654--30939812	29	5.4	29	72	13	96	39	13	24	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30939711--30939872	30	5.4	30	76	6	150	40	12	25	20	1.88
30939712--30939872	60	2.7	59	77	13	168	40	13	25	20	1.88
30939860--30939918	30	2.0	30	82	0	73	32	11	25	30	1.92
30942332--30942388	30	1.9	30	85	0	78	38	12	19	29	1.88
30942827--30942925	23	4.3	23	76	0	108	24	18	26	31	1.97
30946173--30946271	23	4.3	23	80	0	117	25	20	24	30	1.99
30946173--30946271	46	2.2	46	84	0	135	25	20	24	30	1.99
30948641--30948679	18	2.2	17	86	13	53	30	0	20	48	1.50
30948905--30949003	23	4.3	23	85	0	135	21	21	27	30	1.98
30948905--30949003	46	2.2	46	88	0	153	21	21	27	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141