genome.fa.s1.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  33  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11040548--11040642	45	2.1	46	98	2	183	27	9	23	40	1.85
11044504--11044535	5	6.6	5	92	7	57	18	0	0	81	0.70
11045694--11045980	43	6.7	43	83	3	314	25	19	30	25	1.98
11045702--11045980	85	3.3	86	83	3	323	25	18	30	25	1.98
11045702--11045980	128	2.2	128	85	1	373	25	18	30	25	1.98
11048430--11048496	22	3.1	21	79	10	64	47	0	31	20	1.51
11048430--11048478	22	2.3	22	86	6	66	48	0	28	22	1.50
11052948--11053036	36	2.4	35	80	14	90	41	2	3	52	1.30
11052967--11053035	35	1.9	35	85	8	95	37	2	4	55	1.35
11059766--11059816	17	2.9	17	88	2	66	15	23	27	33	1.95
11064237--11064307	35	2.0	35	86	0	97	19	15	28	36	1.92
11064311--11064352	18	2.3	18	88	8	59	23	23	21	30	1.99
11065563--11065602	21	1.9	21	84	0	53	47	2	20	30	1.63
11066096--11066137	12	3.5	12	86	0	66	38	26	33	2	1.69
11072372--11072474	28	3.7	28	76	7	93	36	15	18	29	1.92
11072348--11072469	56	2.2	56	83	7	158	36	14	21	27	1.92
11072395--11072474	14	5.7	14	70	11	56	35	15	21	28	1.93
11072386--11072487	28	3.6	28	77	7	91	36	13	19	30	1.91
11072782--11072955	55	3.2	55	100	0	348	23	17	27	31	1.97
11072782--11073000	110	2.0	110	80	1	251	26	18	25	30	1.98
11074439--11074532	36	2.6	36	88	3	145	34	18	20	27	1.95
11076076--11076161	37	2.3	37	83	0	100	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11081664--11081762	49	2.0	49	94	0	171	19	30	5	45	1.71
11087491--11087536	22	2.1	22	84	8	58	15	10	17	56	1.67
11091735--11091819	11	7.5	11	76	16	50	32	1	3	62	1.20
11091727--11091784	11	5.5	10	82	11	62	27	1	5	65	1.23
11091804--11091839	18	1.9	19	88	5	56	38	0	5	55	1.23
11091801--11091902	50	2.0	51	96	3	188	27	0	5	66	1.14
11092265--11092391	40	3.2	40	74	7	125	33	23	12	30	1.92
11094327--11094357	12	2.6	12	94	0	53	29	0	38	32	1.57
11099349--11099373	11	2.3	11	100	0	50	48	16	12	24	1.79
11099373--11099478	14	7.6	14	72	10	56	39	14	15	31	1.86
11099367--11099478	28	4.0	28	73	11	95	40	13	15	31	1.85
11099360--11099468	56	1.9	56	88	3	166	39	13	16	30	1.87
11099592--11099676	37	2.3	37	83	0	107	32	20	20	27	1.97
11100609--11100694	43	2.0	43	97	0	163	10	34	5	48	1.61
11102578--11102638	23	2.7	23	94	0	104	44	21	19	14	1.86
11103534--11103742	92	2.3	91	86	5	278	45	3	3	46	1.39
11103670--11103717	26	1.9	25	84	16	64	45	0	2	52	1.12
11103892--11103933	15	2.7	16	82	14	52	45	0	2	52	1.13
11103883--11103924	15	2.9	15	82	10	52	47	0	0	52	1.00
11112429--11112474	24	2.0	21	84	12	56	13	34	8	43	1.74
11122423--11122449	2	13.5	2	100	0	54	51	0	0	48	1.00
11122460--11122504	15	2.9	15	83	6	54	46	2	8	42	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11122976--11123007	2	16.0	2	100	0	64	50	0	0	50	1.00
11124187--11124239	19	2.7	20	79	8	63	54	1	3	39	1.29
11124266--11124314	19	2.6	19	78	12	57	69	6	0	24	1.11
11125261--11125306	19	2.2	20	85	11	58	39	0	0	60	0.97
11128919--11129097	90	2.0	90	94	2	315	44	17	7	30	1.77
11133277--11133322	22	2.1	22	84	8	58	47	21	6	23	1.74
11136523--11136588	20	3.3	20	75	8	71	37	16	30	15	1.90
11139683--11139759	11	7.4	11	76	16	58	37	2	0	59	1.11
11139690--11139768	40	2.0	39	95	2	140	35	2	0	62	1.09
11139742--11139781	21	1.9	21	89	0	62	37	2	0	60	1.11
11139741--11139799	22	2.8	21	80	14	59	40	1	3	54	1.27
11140072--11140147	26	2.9	26	78	3	73	34	17	7	40	1.78
11140310--11140347	18	2.1	18	95	0	67	15	18	5	60	1.53
11142098--11142135	17	2.2	17	95	0	67	26	18	13	42	1.87
11142082--11142184	17	6.1	17	80	0	62	26	26	16	31	1.97
11150392--11150467	40	1.9	40	97	0	143	35	22	10	31	1.88
11152171--11152200	16	1.9	16	93	6	53	36	0	0	63	0.95
11158626--11158674	24	2.0	24	100	0	98	36	16	16	30	1.91
11160255--11160303	26	1.9	25	91	4	80	28	12	22	36	1.90
11168991--11169015	11	2.3	11	100	0	50	48	20	0	32	1.50
11170392--11170857	233	2.0	233	98	0	905	35	14	8	41	1.76
11171348--11171387	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11174867--11175056	50	3.7	50	80	4	173	28	19	28	23	1.98
11182667--11182811	50	2.9	50	82	0	173	28	20	29	21	1.98
11191633--11191658	12	2.2	12	100	0	52	23	0	30	46	1.53
11191936--11191988	26	2.0	26	92	0	88	39	18	7	33	1.79
11192782--11192815	14	2.4	14	100	0	68	35	14	5	44	1.70
11193432--11193478	24	2.0	24	86	0	67	25	44	21	8	1.80
11193626--11193700	33	2.3	33	85	0	96	18	48	8	25	1.75
11193963--11194316	49	7.3	49	90	1	534	45	12	10	31	1.77
11193963--11194297	146	2.3	147	92	2	559	45	13	10	30	1.77
11210798--11210863	30	2.2	31	81	8	73	25	1	10	62	1.37
11228420--11228482	23	2.7	24	79	16	87	52	22	7	17	1.70
11228449--11228494	22	2.1	22	84	8	58	58	19	4	17	1.55
11236029--11236161	43	3.1	42	77	5	117	28	27	15	28	1.96
11240756--11240889	44	3.0	45	71	11	107	29	21	16	32	1.95
11241209--11241346	44	3.2	44	63	17	115	24	23	24	26	2.00
11240863--11241362	176	2.9	173	92	2	811	24	21	23	31	1.98
11240863--11241356	263	1.9	261	92	1	837	24	21	23	31	1.98
11240863--11241356	87	5.7	87	92	1	801	24	21	23	31	1.98
11242551--11242602	7	7.7	7	85	8	72	15	15	0	69	1.20
11242551--11242601	13	3.8	13	82	12	68	15	15	0	68	1.21
11242552--11242602	20	2.5	20	93	0	84	15	15	0	68	1.21
11243440--11243474	15	2.2	16	90	5	54	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11244199--11244278	39	2.1	39	92	0	133	42	5	15	37	1.68
11249576--11249600	10	2.5	10	100	0	50	8	8	8	76	1.18
11258167--11258221	26	2.1	26	83	12	69	47	0	1	50	1.11
11258175--11258251	17	4.4	17	77	16	70	42	1	1	54	1.16
11260592--11260637	17	2.8	16	80	9	56	41	19	4	34	1.71
11260525--11261184	68	9.6	68	69	10	306	32	22	11	33	1.90
11260618--11260878	142	1.8	142	83	3	346	30	21	11	35	1.90
11260524--11261175	136	4.7	135	75	9	487	32	22	11	33	1.90
11260661--11261184	204	2.5	204	79	4	480	32	21	12	33	1.91
11260941--11261184	34	7.2	33	66	17	99	33	20	13	32	1.91
11265132--11265195	4	15.5	4	78	18	69	3	23	0	73	0.97
11265131--11265188	14	4.1	14	74	14	57	3	22	0	74	0.97
11265136--11265198	22	3.0	21	90	4	92	3	25	0	71	1.01
11265158--11265209	22	2.4	22	83	6	61	5	28	0	65	1.16
11265282--11265353	27	2.7	27	91	0	108	23	26	27	22	1.99
11268267--11268295	1	29.0	1	100	0	58	100	0	0	0	0.00
11270605--11270671	34	2.0	34	84	0	89	32	11	17	37	1.87
11272111--11272234	50	2.4	53	75	9	128	41	13	13	30	1.83
11272856--11272897	21	2.0	21	85	0	57	28	26	19	26	1.98
11276686--11276797	35	3.1	35	68	14	111	53	8	11	26	1.64
11276650--11276800	72	2.1	72	97	0	284	50	7	12	29	1.68
11276650--11276766	37	3.2	37	67	13	107	49	8	11	29	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11276673--11276783	36	3.1	36	67	14	111	54	8	10	27	1.63
11277573--11277609	2	18.5	2	100	0	74	48	0	0	51	1.00
11280581--11280611	2	15.5	2	100	0	62	48	0	0	51	1.00
11280870--11280901	2	16.0	2	100	0	64	50	0	0	50	1.00
11285338--11285399	32	2.0	31	87	9	90	20	0	22	56	1.42
11290063--11290132	26	2.7	26	88	0	95	22	24	27	25	2.00
11293063--11293114	28	1.9	26	92	7	86	21	25	26	26	1.99
11293064--11293147	28	2.9	28	73	16	71	21	26	27	25	1.99
11297784--11298053	134	2.0	134	93	0	459	31	12	27	27	1.93
11314760--11314846	43	2.0	43	95	0	156	37	22	9	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141