Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  10  of  138  ( 16447 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2938234--2938284
26
2.0
26
84
7
68
70
0
1
27
0.98
2938243--2938287
20
2.2
21
80
11
58
68
0
0
31
0.89
2943167--2943203
19
1.9
19
94
0
65
72
2
0
24
0.97
2943610--2943648
21
2.0
20
90
10
62
23
7
2
66
1.30
2944762--2944821
29
2.1
27
81
6
66
45
1
3
50
1.28
2947284--2947308
3
8.3
3
100
0
50
68
0
0
32
0.90
2947331--2947388
28
2.1
26
84
9
71
72
10
0
17
1.11
2948226--2948269
3
14.7
3
86
9
63
29
0
0
70
0.88
2948207--2948263
27
2.1
27
86
0
78
22
3
0
73
0.98
2950393--2950439
23
2.0
23
95
0
85
29
12
10
46
1.76
2956098--2956151
25
2.2
24
83
9
65
51
7
0
40
1.30
2958158--2958226
33
2.1
33
97
0
129
42
0
10
47
1.37
2958171--2958226
19
3.2
19
61
23
50
46
0
8
44
1.34
2959496--2959532
13
2.8
13
95
4
65
64
5
5
24
1.36
2961764--2961803
2
20.0
2
100
0
80
0
0
50
50
1.00
2965524--2965552
15
1.9
15
100
0
58
37
20
6
34
1.80
2967281--2967306
3
8.7
3
100
0
52
69
0
0
30
0.89
2973718--2973797
42
2.0
40
82
9
99
45
1
6
47
1.36
2973814--2973863
22
2.3
21
80
10
55
46
0
2
52
1.12
2976870--2976915
16
2.7
17
75
18
51
47
0
2
50
1.13
2978238--2978278
21
2.0
21
90
0
64
34
4
4
56
1.42
2978696--2978735
20
2.1
19
86
13
55
52
0
2
45
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2981350--2981395
23
2.0
23
82
0
56
30
6
4
58
1.43
2984524--2984602
28
2.8
28
79
13
81
41
2
6
49
1.42
2991340--2991371
15
2.1
15
94
0
55
46
0
0
53
1.00
2996276--2996313
13
2.6
15
88
12
53
68
0
28
2
1.03
2997149--2997213
23
2.8
23
79
4
60
26
1
3
69
1.12
2997730--2997764
10
3.3
10
88
11
52
60
0
0
40
0.97
2998511--2998560
3
17.0
3
95
4
93
66
0
34
0
0.92
3003422--3003461
19
2.1
19
100
0
80
25
25
10
40
1.86
3005686--3005711
6
4.3
6
100
0
52
69
0
0
30
0.89
3005885--3005946
27
2.3
29
78
18
71
54
0
0
45
0.99
3005938--3005987
21
2.4
21
77
12
57
54
2
2
42
1.23
3006837--3006884
22
2.2
21
82
14
62
45
0
2
52
1.12
3012565--3012979
205
2.0
205
99
0
814
33
21
15
28
1.94
3014759--3014787
14
2.1
14
93
6
51
37
0
0
62
0.96
3016195--3016257
32
2.0
32
84
6
85
47
1
1
49
1.20
3016209--3016256
16
3.0
16
71
0
51
50
0
2
47
1.12
3016209--3016271
32
2.0
31
81
12
74
49
0
3
47
1.17
3016302--3016368
33
2.0
33
100
0
134
32
2
26
37
1.72
3025780--3025849
29
2.3
31
80
9
83
50
10
4
35
1.56
3032896--3032930
17
2.1
17
89
10
54
22
0
25
51
1.48
3037006--3037035
5
6.0
5
92
0
51
16
0
3
80
0.85
3037012--3037044
11
3.1
11
91
4
50
21
0
0
78
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3037163--3037225
23
2.5
26
82
17
80
34
1
1
61
1.15
3037143--3037260
16
7.6
15
72
17
73
40
1
1
55
1.20
3037144--3037255
38
2.8
39
76
13
111
40
1
1
56
1.20
3037163--3037290
27
5.2
24
72
12
84
42
1
1
54
1.19
3037251--3037289
19
2.0
20
90
5
62
46
0
0
53
1.00
3037141--3037290
81
1.9
78
82
6
185
42
1
2
54
1.20
3042619--3043302
339
2.0
340
99
0
1361
26
21
19
32
1.97
3044176--3044213
7
5.3
7
90
3
58
86
0
0
13
0.56
3044955--3044997
14
2.9
15
83
13
54
20
6
0
72
1.08
3045089--3045151
24
2.5
26
75
17
62
47
3
11
38
1.55
3056079--3056113
16
2.2
16
94
0
61
91
0
5
2
0.50
3056079--3056125
15
3.1
15
88
11
62
89
0
6
4
0.59
3057229--3057396
44
3.9
44
78
10
170
26
11
14
48
1.77
3057325--3057402
40
2.0
40
87
5
113
28
8
17
44
1.79
3059818--3059873
3
18.7
3
100
0
112
66
0
0
33
0.92
3059872--3059911
3
13.3
3
100
0
80
32
0
0
67
0.91
3070171--3070291
52
2.3
52
85
7
156
39
8
4
47
1.55
3072992--3073024
14
2.4
14
90
5
50
48
0
0
51
1.00
3073396--3073552
82
1.9
81
94
3
280
31
6
0
61
1.26
3074856--3074901
14
3.3
14
77
17
51
6
2
10
80
0.98
3074872--3074953
24
3.7
23
74
15
73
14
1
8
75
1.09
3074877--3074944
7
9.6
7
71
15
50
14
1
8
75
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3074853--3074962
34
3.3
33
79
19
106
11
2
8
77
1.09
3074855--3074953
43
2.3
44
76
10
105
12
2
9
76
1.09
3074910--3074961
24
2.2
24
89
0
77
15
3
5
75
1.14
3075143--3076049
49
18.7
48
82
6
865
37
22
12
28
1.90
3075143--3076042
98
9.3
96
83
4
954
37
21
12
28
1.90
3075133--3076049
146
6.3
144
81
6
926
37
21
12
27
1.90
3082757--3082821
25
2.6
26
81
13
75
21
3
6
69
1.25
3082782--3082821
9
4.7
9
84
15
50
25
0
7
67
1.16
3082862--3082924
17
3.7
17
75
22
53
31
1
3
63
1.19
3082875--3082917
17
2.3
19
84
11
54
32
2
2
62
1.20
3082787--3082921
25
5.4
25
68
17
66
31
1
4
62
1.23
3082875--3082981
35
2.9
37
74
14
89
26
4
2
66
1.25
3083912--3084035
10
12.3
10
67
19
53
18
5
3
72
1.18
3083976--3084035
20
2.9
21
80
14
70
13
6
1
78
1.02
3083970--3084035
16
4.1
16
74
7
62
13
7
1
77
1.05
3084072--3084524
60
7.7
58
88
7
614
45
7
12
34
1.71
3084072--3084524
119
3.8
118
88
6
661
45
7
12
34
1.71
3090223--3090255
13
2.4
14
90
5
50
15
3
0
81
0.80
3091255--3091301
18
2.6
18
86
6
51
14
4
0
80
0.85
3091264--3091295
11
2.9
11
100
0
64
15
0
0
84
0.63
3091264--3091301
7
5.3
7
87
12
51
15
0
0
84
0.63
3094925--3095514
313
1.9
310
84
6
798
36
9
8
45
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3097846--3097883
15
2.4
16
82
13
51
47
0
0
52
1.00
3097854--3098005
15
10.1
15
70
20
72
55
1
1
40
1.19
3097862--3098010
11
13.6
11
67
19
71
56
1
2
40
1.19
3097889--3097964
27
3.0
25
80
12
68
57
1
2
38
1.21
3097832--3098010
22
8.0
22
72
21
117
55
1
1
41
1.17
3097903--3097969
26
2.5
26
83
11
75
61
1
1
35
1.15
3102336--3103438
274
4.0
274
89
2
1573
31
26
7
34
1.84
3107074--3107140
27
2.4
27
77
20
68
35
2
5
55
1.40
3108829--3108915
32
2.7
32
85
3
102
36
5
9
48
1.59
3109976--3110045
29
2.3
31
80
9
83
35
4
10
50
1.56
3119503--3119542
20
2.0
21
95
5
73
47
0
2
50
1.14
3119505--3119548
20
2.2
20
88
8
63
47
0
2
50
1.13
3120334--3120397
34
1.9
32
81
12
76
39
12
6
42
1.68
3120908--3120957
18
2.7
20
73
20
54
54
0
0
46
1.00
3120939--3120975
15
2.6
14
86
4
56
62
0
0
37
0.96
3122753--3123167
205
2.0
205
99
0
814
28
15
21
33
1.94
3129769--3129831
19
3.7
19
64
27
50
44
0
0
55
0.99
3130030--3130101
37
1.9
37
86
5
101
54
4
1
40
1.28
3137204--3137238
3
12.0
3
93
6
63
0
34
0
65
0.93
3137988--3138022
10
3.3
10
88
11
52
40
0
0
60
0.97
3141164--3141222
19
3.2
17
79
11
64
84
0
10
5
0.76
3142241--3142299
29
2.1
28
93
3
100
28
6
11
52
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3142330--3142453
44
2.8
43
89
4
178
25
9
12
52
1.69
3144923--3144954
3
10.7
3
100
0
64
65
0
0
34
0.93
3155195--3155313
52
2.3
52
84
9
147
39
8
5
46
1.58
3155559--3157619
954
2.2
945
82
5
2469
39
11
11
38
1.77
3159901--3159951
3
16.3
3
92
8
84
31
1
0
66
1.03
3159826--3159960
26
5.2
25
71
16
91
31
5
1
60
1.29
3159901--3160006
41
2.5
43
82
11
123
29
3
2
64
1.25
3160203--3160237
17
2.1
17
88
0
52
65
17
17
0
1.27
3160376--3160453
15
4.6
16
71
21
61
21
0
3
74
0.98
3160337--3160453
53
2.2
52
91
4
200
24
0
5
70
1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138