genome.fa.s124.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  9  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2503242--2503336	48	2.0	49	87	2	138	25	11	18	44	1.84
2502804--2503397	147	4.0	147	88	2	809	25	13	19	41	1.88
2503471--2503798	99	3.3	95	78	10	273	30	10	19	38	1.86
2503573--2503798	99	2.3	98	83	3	283	30	11	19	38	1.87
2503471--2503799	50	6.6	48	78	9	268	30	10	19	38	1.86
2504049--2504104	20	2.8	20	83	2	60	76	5	1	16	1.05
2508175--2508332	30	5.3	30	74	8	108	38	7	2	51	1.44
2508237--2508340	30	3.5	30	82	5	111	40	10	1	47	1.49
2508375--2508457	29	2.8	29	75	15	73	61	2	1	34	1.17
2518654--2518713	23	2.6	23	94	0	102	58	5	26	10	1.51
2529220--2529259	21	1.9	21	84	0	53	62	0	0	37	0.95
2556769--2556865	50	1.9	52	89	4	153	24	21	15	38	1.92
2559627--2559657	7	4.4	7	91	0	53	41	19	38	0	1.51
2562595--2562673	39	2.0	39	100	0	158	44	5	10	40	1.60
2578454--2578491	17	2.3	17	86	13	53	26	0	7	65	1.19
2578718--2578749	11	2.8	12	90	9	50	84	0	3	12	0.74
2578696--2578749	27	2.0	28	85	3	74	75	5	5	12	1.15
2579190--2579248	20	3.0	19	77	5	64	50	25	3	20	1.63
2579649--2579718	9	7.9	9	74	15	56	52	5	2	38	1.40
2579642--2579734	44	2.0	49	84	14	126	51	4	3	40	1.38
2579929--2580678	120	6.2	120	80	1	694	45	14	21	19	1.84
2579923--2580685	240	3.2	240	82	2	834	45	14	21	19	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2580045--2580759	360	2.0	360	81	3	830	45	14	21	18	1.84
2581072--2581118	20	2.3	20	80	16	53	14	19	6	59	1.56
2586080--2586119	21	2.0	21	85	5	55	37	25	0	37	1.56
2586124--2586180	20	2.9	21	69	12	57	52	28	3	15	1.59
2586551--2586676	9	14.6	9	74	20	83	56	4	3	35	1.36
2586541--2586678	3	49.3	3	65	25	63	57	4	2	34	1.33
2586579--2586675	5	19.2	5	71	16	58	55	4	3	37	1.35
2586542--2586678	55	2.4	57	78	11	149	57	4	2	35	1.33
2586542--2586677	73	1.9	69	85	8	184	57	4	2	35	1.34
2586557--2586711	9	19.2	8	73	20	67	52	6	4	36	1.47
2592252--2592880	329	1.9	329	92	0	1042	18	32	24	25	1.97
2596041--2596084	3	14.7	3	100	0	88	34	0	0	65	0.93
2604709--2604830	43	2.8	42	75	15	106	53	3	0	42	1.23
2638280--2638314	7	5.0	7	96	0	52	65	0	0	34	0.93
2638970--2639006	18	2.1	18	89	0	56	10	10	48	29	1.72
2647379--2647410	2	16.0	2	93	0	55	46	0	3	50	1.17
2651934--2651963	5	6.0	5	100	0	60	80	0	0	20	0.72
2660499--2660523	13	1.9	13	100	0	50	60	0	0	40	0.97
2663586--2663658	27	2.6	28	75	12	78	36	0	4	58	1.17
2667606--2667680	36	2.1	36	92	0	123	33	20	24	22	1.97
2670879--2670991	56	2.0	56	100	0	226	26	21	7	45	1.77
2671742--2671796	25	2.1	27	83	6	69	32	12	3	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2671876--2671915	21	2.0	20	85	5	53	32	7	5	55	1.50
2672055--2672101	17	2.5	20	83	13	64	34	0	2	63	1.06
2677054--2677099	22	2.1	21	84	4	56	43	6	0	50	1.28
2677896--2677930	18	1.9	18	88	0	52	22	5	8	62	1.45
2681475--2681572	47	2.1	47	98	0	187	25	6	18	50	1.70
2682917--2682950	9	3.8	9	88	0	50	64	0	0	35	0.94
2682914--2682954	21	2.0	21	85	0	55	63	0	0	36	0.95
2682913--2682956	18	2.4	18	80	0	52	61	0	0	38	0.96
2687349--2687392	15	2.8	16	82	6	54	45	4	4	45	1.44
2695463--2695506	20	2.1	21	84	12	56	2	20	2	75	1.03
2701598--2701657	25	2.5	24	73	10	59	55	1	1	41	1.20
2704497--2704585	45	1.9	47	86	6	128	48	2	4	44	1.35
2720430--2720459	11	2.7	11	94	0	51	40	0	10	50	1.36
2726253--2728226	936	2.1	936	81	4	2293	34	19	8	37	1.83
2733520--2733563	19	2.2	20	88	4	63	34	2	0	63	1.07
2733618--2733661	17	2.4	18	88	7	63	72	0	0	27	0.85
2735595--2735645	23	2.3	22	80	6	59	21	5	1	70	1.18
2736107--2736310	46	4.4	45	71	13	139	45	16	11	26	1.81
2736149--2736421	95	2.9	91	81	8	275	41	17	9	31	1.82
2736107--2736406	139	2.2	137	80	7	336	43	17	10	29	1.81
2736177--2736452	48	5.8	48	72	10	201	40	19	9	30	1.84
2736394--2736560	69	2.4	69	90	2	257	41	23	8	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2736386--2736589	68	3.0	67	83	5	248	40	23	10	25	1.86
2736616--2736724	48	2.2	48	83	3	128	44	16	5	33	1.71
2739650--2739674	13	1.9	13	100	0	50	32	0	4	64	1.12
2739739--2739785	23	2.0	24	83	4	60	65	0	2	31	1.04
2740768--2740796	13	2.1	14	93	6	51	75	0	24	0	0.80
2740779--2740831	18	3.0	17	76	17	54	83	1	11	3	0.87
2740786--2740834	21	2.4	20	83	10	64	83	2	10	4	0.85
2741837--2741890	17	2.9	19	79	17	53	48	5	5	40	1.50
2741894--2741926	2	17.0	2	87	6	50	51	0	3	45	1.16
2773894--2773955	25	2.4	27	81	13	76	50	3	1	45	1.27
2774526--2774590	24	2.7	24	95	0	112	27	0	32	40	1.57
2775594--2775705	52	2.2	52	83	6	138	55	8	13	23	1.64
2783747--2783776	5	6.0	5	100	0	60	80	0	0	20	0.72
2784172--2784251	40	2.0	40	90	0	124	40	5	15	40	1.68
2788874--2788927	10	5.0	10	86	10	63	31	1	0	66	1.02
2788877--2788917	10	3.7	11	90	9	66	26	2	0	70	0.99
2788877--2788927	22	2.3	22	86	6	68	31	1	0	66	1.03
2797170--2797766	230	2.6	230	82	8	697	41	10	4	43	1.60
2810124--2810153	16	1.9	16	93	6	53	0	0	13	86	0.57
2812964--2813015	21	2.4	21	87	9	70	55	0	0	44	0.99
2816646--2816692	26	1.9	23	86	8	58	4	51	0	44	1.21
2820524--2820580	5	10.8	5	78	10	51	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2820524--2820583	27	2.3	26	88	2	84	66	0	0	33	0.92
2820650--2820687	18	2.2	18	90	4	60	42	0	0	57	0.98
2820648--2820692	17	2.4	19	78	17	58	42	0	0	57	0.98
2821697--2821733	11	3.3	11	85	7	56	35	0	2	62	1.10
2828270--2828313	6	7.8	6	85	14	67	0	47	0	52	1.00
2828270--2828347	18	4.8	15	77	14	66	0	42	2	55	1.13
2828246--2828315	33	2.2	31	85	14	90	1	45	1	51	1.18
2829538--2829593	28	2.0	28	100	0	112	46	10	28	14	1.78
2838066--2838098	3	11.0	3	100	0	66	66	0	33	0	0.92
2841017--2841149	71	1.9	70	82	6	169	35	3	6	54	1.43
2847486--2847540	21	2.6	21	81	15	69	56	1	0	41	1.10
2849662--2849706	17	2.7	18	80	19	62	46	0	0	53	1.00
2849668--2849759	29	3.3	27	77	11	87	50	2	3	44	1.30
2849663--2849729	29	2.2	31	86	7	93	52	0	0	47	1.00
2849772--2849806	15	2.2	16	90	5	54	31	2	0	65	1.07
2849771--2849807	16	2.3	17	81	13	51	29	2	0	67	1.04
2850710--2850767	29	2.0	29	89	0	89	50	3	6	39	1.46
2852077--2852140	33	1.9	33	87	0	92	42	0	3	54	1.16
2852113--2852159	21	2.2	22	84	3	60	38	0	0	61	0.96
2852918--2852948	10	3.1	10	100	0	62	9	38	0	51	1.35
2861437--2861468	2	16.5	2	93	6	57	53	0	0	46	1.00
2862855--2862902	22	2.2	22	88	7	71	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2885854--2885910	30	1.9	30	100	0	114	43	7	12	36	1.69
2895758--2895849	33	2.8	32	80	11	89	39	5	4	51	1.45
2896157--2896192	2	18.0	2	100	0	72	50	0	50	0	1.00
2899483--2899534	14	3.5	14	70	14	50	48	21	5	25	1.72
2899475--2899540	31	2.1	31	100	0	132	51	19	6	22	1.69
2902187--2902222	18	2.0	18	100	0	72	50	5	0	44	1.25
2914535--2914559	2	12.5	2	100	0	50	52	0	0	48	1.00
2927994--2928020	2	13.5	2	100	0	54	51	0	0	48	1.00
2932229--2932260	2	16.0	2	100	0	64	50	0	50	0	1.00
2938243--2938284	13	3.2	13	82	0	57	71	0	0	28	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138