Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  7  of  138  ( 16447 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1826764--1826795
11
2.9
11
95
0
55
46
28
0
25
1.53
1826966--1827002
18
2.0
19
89
5
58
18
29
13
37
1.90
1827044--1827112
25
2.8
25
77
2
77
20
36
10
33
1.86
1840984--1841030
21
2.2
21
82
14
53
34
14
0
51
1.43
1842255--1842311
24
2.4
23
85
8
87
54
0
0
45
0.99
1842257--1842306
24
2.0
25
96
3
93
56
0
0
44
0.99
1842255--1842347
24
4.1
22
74
17
84
53
0
0
46
1.00
1854873--1854912
17
2.3
18
87
12
57
50
2
0
47
1.14
1854879--1854946
24
2.8
25
76
12
70
51
2
0
45
1.16
1854893--1854958
32
2.1
32
86
11
91
51
3
0
45
1.16
1856035--1856101
29
2.2
30
82
15
77
65
2
1
29
1.16
1857945--1857987
18
2.4
18
80
7
52
62
4
0
32
1.15
1864930--1864959
9
3.2
9
95
4
51
63
0
0
36
0.95
1864932--1864961
10
3.1
10
95
4
53
63
0
0
36
0.95
1864979--1865109
66
2.0
66
96
0
244
37
8
18
35
1.81
1865126--1865230
52
2.0
52
100
0
210
43
3
9
42
1.55
1871710--1871757
24
2.0
24
84
15
64
41
0
2
56
1.11
1871710--1871766
26
2.3
25
80
14
64
43
0
1
54
1.10
1871752--1871810
28
2.0
31
83
9
79
52
0
0
47
1.00
1873772--1873803
12
2.7
12
100
0
64
31
18
15
34
1.93
1880866--1880916
14
3.5
14
79
15
50
62
0
3
33
1.13
1884404--1884464
31
2.0
31
86
0
86
39
1
22
36
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1893442--1893470
11
2.7
11
94
5
51
55
0
0
44
0.99
1893476--1893518
21
2.0
22
86
4
61
46
0
2
51
1.13
1893476--1893520
18
2.2
21
81
18
60
46
0
2
51
1.13
1893967--1894000
14
2.3
15
90
5
52
50
0
0
50
1.00
1894032--1894062
6
5.0
6
96
4
53
51
0
0
48
1.00
1894111--1894181
36
1.9
37
83
8
92
33
0
4
61
1.15
1894490--1894661
66
2.6
66
88
0
245
38
6
19
34
1.78
1894625--1894695
37
1.9
37
94
0
124
45
0
19
35
1.51
1894559--1894763
103
2.0
104
91
1
331
41
4
20
33
1.72
1894662--1895022
66
5.4
66
79
10
369
38
6
21
33
1.79
1896554--1896600
22
2.1
23
84
4
60
38
21
14
25
1.92
1897652--1897692
19
2.2
19
86
8
57
73
9
0
17
1.09
1898007--1898040
14
2.3
15
90
5
52
47
0
0
52
1.00
1898019--1898070
27
1.9
27
84
7
70
48
5
0
46
1.26
1898137--1898166
13
2.4
13
94
5
53
40
0
0
60
0.97
1898397--1898465
28
2.5
28
97
0
129
37
10
26
26
1.88
1918577--1918621
2
23.0
2
86
4
65
51
0
2
46
1.13
1918949--1919004
15
3.9
15
73
19
57
57
0
0
42
0.99
1918951--1919012
28
2.3
27
86
8
81
53
0
0
46
1.00
1918960--1919004
13
3.3
13
80
20
56
57
0
0
42
0.98
1918956--1919003
14
3.4
14
81
18
55
56
0
0
43
0.99
1918949--1919017
28
2.5
27
82
15
79
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1932731--1932774
22
2.0
22
95
0
79
31
11
13
43
1.80
1932948--1933014
25
2.8
25
81
4
75
13
23
19
43
1.86
1936631--1936674
22
2.0
22
90
0
70
31
13
13
40
1.84
1937202--1937230
2
14.5
2
100
0
58
0
48
0
51
1.00
1940937--1941229
146
2.0
147
91
2
473
34
11
13
40
1.80
1952676--1952726
25
2.0
25
81
7
59
27
17
1
52
1.55
1952738--1952777
21
1.9
21
85
10
55
45
7
7
40
1.61
1952738--1952799
23
2.9
22
76
13
58
46
6
6
40
1.55
1952902--1952952
21
2.5
19
84
12
66
43
0
0
56
0.99
1952912--1952965
21
2.5
22
79
14
58
42
0
0
57
0.98
1961576--1961605
2
15.0
2
100
0
60
50
0
0
50
1.00
1972287--1972317
11
2.8
11
100
0
62
45
0
54
0
0.99
1985473--1985526
24
2.3
23
81
12
56
16
9
11
62
1.52
1985586--1985626
21
2.0
22
85
9
59
9
7
2
80
0.99
1986159--1986225
25
2.6
25
79
9
73
62
0
2
34
1.10
1986158--1986241
26
3.3
25
80
8
89
63
1
4
30
1.23
1986892--1986976
35
2.5
34
80
5
82
34
15
17
32
1.91
1987923--1987982
23
2.7
22
85
7
77
35
0
15
50
1.44
1989241--1989292
24
2.2
24
89
0
77
21
3
13
61
1.48
1991796--1991846
26
2.0
26
84
0
66
25
9
19
45
1.81
2018473--2018503
7
4.4
7
95
0
53
74
3
0
22
0.96
2019634--2019701
29
2.2
32
82
15
81
66
4
0
29
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2019852--2019899
19
2.6
18
70
9
51
62
0
6
31
1.20
2031893--2033058
48
24.0
50
80
8
1182
28
13
21
36
1.92
2031893--2033099
98
12.4
99
80
9
1216
28
13
21
35
1.92
2033263--2033302
17
2.2
18
86
8
55
70
10
0
20
1.16
2033246--2033311
28
2.4
27
82
2
78
71
7
3
18
1.23
2038974--2039008
2
17.5
2
93
0
61
48
0
2
48
1.16
2039647--2039676
12
2.4
13
94
5
53
46
0
3
50
1.18
2040980--2041024
23
2.0
23
81
0
54
22
13
20
44
1.85
2041252--2041283
16
2.0
16
93
0
55
43
3
18
34
1.66
2041444--2042378
465
2.0
466
92
0
1577
34
14
12
38
1.84
2042965--2043006
12
3.3
13
83
12
52
26
2
0
71
0.98
2043063--2043110
4
11.8
4
82
8
53
72
6
2
18
1.15
2045540--2045582
17
2.5
17
84
0
59
27
6
9
55
1.57
2056349--2056389
3
13.7
3
100
0
82
34
0
0
65
0.93
2058415--2058450
2
18.0
2
88
0
54
55
0
0
44
0.99
2064882--2064981
51
2.0
51
82
7
123
36
13
9
42
1.75
2066377--2066422
23
2.0
23
86
0
65
23
13
21
41
1.88
2066624--2066673
3
16.7
3
95
0
91
64
0
2
34
1.05
2066685--2066716
16
2.0
16
93
0
55
43
3
18
34
1.66
2067927--2067969
12
3.4
13
84
12
54
25
2
0
72
0.97
2067932--2067975
12
3.7
12
87
6
54
27
4
0
68
1.09
2067941--2067977
11
3.3
11
88
7
56
24
2
0
72
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2069458--2069534
36
2.1
36
85
4
102
48
19
7
24
1.75
2070498--2070540
17
2.5
17
84
0
59
27
6
9
55
1.57
2084956--2085014
3
19.7
3
100
0
118
33
0
0
66
0.92
2085886--2085936
5
10.4
5
75
12
52
74
3
0
21
0.98
2085886--2085936
20
2.6
19
81
3
66
74
3
0
21
0.98
2086775--2086800
3
8.7
3
100
0
52
65
0
0
34
0.93
2086941--2086984
2
22.0
2
90
0
70
54
0
0
45
0.99
2088844--2088869
1
26.0
1
100
0
52
100
0
0
0
0.00
2095217--2095241
2
12.5
2
100
0
50
52
0
0
48
1.00
2101906--2101930
2
12.5
2
100
0
50
0
48
0
52
1.00
2102201--2102291
45
2.0
45
100
0
182
31
17
15
35
1.91
2104768--2104812
20
2.2
20
88
0
63
66
0
2
31
1.04
2105299--2105344
23
1.9
25
86
8
69
50
0
0
50
1.00
2107930--2107975
21
2.2
21
84
7
58
34
2
2
60
1.21
2108600--2108653
24
2.3
24
80
3
65
40
1
3
53
1.29
2109571--2109611
20
2.0
22
85
9
59
63
0
0
36
0.95
2109556--2109629
26
2.8
26
77
6
69
59
0
0
40
0.97
2127342--2127417
29
3.0
24
75
17
64
57
0
2
39
1.12
2128344--2128393
25
2.0
25
84
7
66
52
0
0
48
1.00
2129398--2129444
17
2.9
16
77
22
53
42
0
55
2
1.12
2136394--2136426
15
2.1
17
88
11
52
54
0
0
45
0.99
2140084--2140120
19
2.0
19
94
5
67
54
0
0
45
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2140180--2140223
11
3.8
11
82
11
61
29
0
0
70
0.88
2140181--2140220
13
3.2
13
79
13
57
30
0
0
70
0.88
2140179--2140228
15
3.4
14
81
13
55
32
0
0
68
0.90
2140190--2140228
16
2.7
15
88
11
55
30
0
0
69
0.89
2140298--2140329
16
2.0
16
100
0
64
31
43
6
18
1.75
2148750--2148787
2
19.0
2
100
0
76
0
50
0
50
1.00
2150777--2150810
2
17.0
2
100
0
68
50
0
0
50
1.00
2151823--2151900
39
2.0
39
89
0
120
34
16
21
26
1.95
2153299--2153377
33
2.5
33
78
15
96
40
0
1
58
1.06
2153547--2153578
8
3.9
8
95
4
55
25
0
0
75
0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138