genome.fa.s124.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  55  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11383846--11383928	34	2.4	35	87	4	123	49	3	22	24	1.66
11384649--11384713	4	16.2	4	76	12	62	73	0	1	24	0.91
11384645--11384713	29	2.4	29	82	4	86	73	0	1	24	0.91
11386087--11386169	23	3.7	22	73	22	82	46	18	4	30	1.69
11386006--11386310	45	6.6	44	75	12	211	42	15	9	32	1.79
11386176--11386310	50	2.8	50	84	5	163	40	15	9	34	1.80
11387649--11387682	11	3.0	11	95	4	59	0	8	2	88	0.62
11390633--11390669	16	2.3	16	90	0	56	64	8	2	24	1.34
11391899--11391955	18	3.1	18	82	10	62	70	0	1	28	0.98
11391911--11391955	4	12.0	4	81	9	51	71	0	2	26	0.98
11391942--11391989	24	2.0	25	83	4	62	70	4	6	18	1.25
11392519--11392803	136	2.1	137	81	5	319	50	12	20	15	1.77
11392737--11392977	69	3.5	67	70	7	189	49	13	21	15	1.79
11392738--11392992	137	1.9	137	83	4	334	49	13	21	15	1.78
11393079--11393159	35	2.3	35	83	6	94	62	8	14	13	1.52
11393098--11393186	35	2.5	35	81	3	99	57	12	15	14	1.66
11394162--11394200	18	2.2	18	86	9	53	5	7	5	82	0.96
11404747--11404778	3	10.7	3	100	0	64	34	31	0	34	1.58
11404777--11404806	3	10.0	3	100	0	60	33	0	0	66	0.92
11405243--11405300	28	2.1	28	100	0	116	34	6	0	58	1.25
11406264--11406297	13	2.6	13	95	0	59	23	5	0	70	1.09
11407408--11407441	16	2.1	16	89	10	52	44	26	11	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11408404--11408446	19	2.3	19	87	0	59	23	9	23	44	1.82
11410075--11410112	19	2.0	20	89	5	60	0	21	5	73	1.02
11410824--11410889	8	8.9	8	77	15	54	24	0	1	74	0.91
11410821--11410886	18	3.7	18	70	22	50	24	0	1	74	0.91
11410824--11410886	17	3.7	17	73	21	51	23	0	1	74	0.90
11411367--11411424	26	2.2	26	87	6	82	6	1	6	84	0.84
11411364--11411427	28	2.4	25	85	12	83	7	1	6	84	0.84
11411577--11411660	32	2.6	32	94	0	141	33	15	14	36	1.88
11411663--11412019	33	11.0	32	75	7	213	29	14	17	38	1.89
11411676--11411855	99	1.8	98	84	5	247	29	12	17	40	1.86
11412213--11412255	22	2.0	22	85	0	59	25	16	23	34	1.95
11412622--11412897	137	2.0	138	96	2	511	38	12	11	37	1.79
11413487--11413535	17	2.8	18	90	3	73	2	14	0	83	0.73
11413487--11413539	6	9.2	6	82	10	58	1	15	0	83	0.74
11413498--11413558	26	2.4	25	84	12	81	3	16	0	80	0.84
11413496--11413576	24	3.2	24	73	23	69	6	19	0	74	1.03
11414057--11414092	13	2.8	13	91	4	56	0	13	0	86	0.58
11414057--11414091	11	3.0	11	91	8	52	0	14	0	85	0.59
11418101--11418153	24	2.1	25	82	6	63	64	13	1	20	1.38
11427174--11427233	27	2.1	28	85	11	79	63	3	1	31	1.20
11428079--11428140	31	2.0	31	90	0	97	41	17	3	37	1.66
11428013--11428215	106	1.9	105	87	3	300	35	16	10	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11428354--11428391	16	2.4	16	91	4	60	23	10	21	44	1.83
11428178--11428467	145	2.0	146	94	2	512	26	16	22	34	1.95
11429014--11429053	20	2.1	18	86	9	53	42	0	5	52	1.23
11432100--11432467	46	8.1	46	80	9	364	50	11	6	31	1.64
11432100--11432465	89	4.0	90	76	12	322	50	11	6	31	1.65
11432784--11432870	32	2.7	32	83	3	111	34	24	10	31	1.89
11433107--11433150	15	2.8	17	77	16	51	9	15	0	75	1.05
11436063--11436120	15	3.8	15	78	10	55	3	17	3	75	1.07
11445452--11445491	19	2.1	19	90	4	62	2	5	22	70	1.19
11445961--11445998	13	2.8	14	84	8	51	68	5	0	26	1.11
11446061--11446102	19	2.3	19	87	4	59	54	14	2	28	1.52
11446385--11446426	22	1.9	22	85	0	57	57	16	7	19	1.62
11448775--11448821	14	3.4	14	82	11	60	70	4	0	25	1.05
11454050--11454244	66	3.0	62	77	13	162	38	11	14	34	1.82
11454540--11454566	14	1.9	14	100	0	54	48	7	0	44	1.31
11454863--11454909	24	1.9	25	82	4	60	51	14	6	27	1.67
11458424--11458737	171	1.8	172	82	6	404	36	17	12	33	1.87
11458603--11459118	247	2.1	246	85	7	690	38	13	15	31	1.87
11467348--11467473	55	2.3	55	83	0	162	45	15	11	27	1.81
11467348--11467501	55	2.8	55	80	3	132	46	13	12	27	1.80
11468927--11468959	16	2.1	16	94	0	57	36	9	12	42	1.74
11472697--11472810	52	2.2	51	76	6	122	37	9	16	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11474109--11474299	53	3.5	53	74	13	170	29	13	7	49	1.70
11474154--11474319	53	2.9	59	72	16	175	25	12	6	55	1.60
11474113--11474319	114	1.8	113	87	7	312	27	11	7	53	1.63
11474340--11474701	190	1.9	190	82	6	455	36	11	6	46	1.65
11475219--11475251	12	2.8	12	90	4	50	63	18	0	18	1.31
11478285--11478326	18	2.3	18	84	8	59	78	2	19	0	0.86
11478289--11478326	20	2.0	20	89	5	60	78	2	18	0	0.86
11478607--11478657	14	3.5	15	77	15	54	82	5	5	5	0.95
11480356--11480480	60	2.1	60	86	3	171	22	24	11	42	1.86
11480696--11480827	50	2.6	51	80	3	131	40	9	13	35	1.78
11481337--11481391	25	2.3	23	79	17	58	18	7	1	72	1.16
11482362--11482484	63	2.0	62	93	1	210	39	8	14	37	1.78
11486503--11486553	19	2.7	20	85	11	63	62	0	0	37	0.95
11486987--11487014	8	3.5	8	100	0	56	21	0	0	78	0.75
11487051--11487091	18	2.2	19	86	4	57	65	2	0	31	1.05
11487722--11487755	17	2.1	16	89	10	52	50	0	0	50	1.00
11499601--11499657	17	3.4	16	73	22	55	14	8	10	66	1.44
11499593--11499657	33	2.0	33	93	0	112	15	7	9	67	1.40
11501153--11501198	13	3.5	13	79	5	56	56	0	2	41	1.11
11507687--11507738	25	2.1	25	96	0	95	26	11	21	40	1.87
11509980--11510021	21	2.0	21	85	0	57	30	35	0	33	1.58
11511379--11511411	17	1.9	17	93	0	57	6	6	21	66	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11512389--11512962	63	9.2	61	67	11	170	35	12	13	38	1.83
11512328--11512998	124	5.4	124	74	9	334	35	13	14	36	1.85
11512328--11513019	126	5.6	122	72	10	356	35	13	14	36	1.85
11513129--11513297	61	2.7	62	76	6	189	37	14	13	34	1.86
11520451--11520743	42	6.9	42	74	9	184	36	14	12	36	1.85
11521212--11521298	42	2.1	42	89	4	131	37	24	8	29	1.84
11521760--11521833	38	1.9	38	83	8	96	71	8	13	6	1.29
11523622--11523664	21	2.0	21	86	0	59	20	6	9	62	1.48
11525025--11525065	22	1.9	22	90	5	66	70	19	4	4	1.24
11525439--11525479	21	2.0	21	85	4	57	70	4	17	7	1.28
11527294--11527335	14	2.9	14	80	16	50	0	26	2	71	0.98
11528385--11528434	13	3.8	13	78	2	55	50	24	6	20	1.70
11530578--11530623	18	2.6	17	82	3	56	32	6	4	56	1.45
11530992--11531064	13	5.6	13	85	0	83	54	23	5	16	1.62
11531137--11531193	26	2.2	26	93	0	96	50	38	1	8	1.44
11536269--11536316	23	2.1	23	96	0	87	37	8	18	35	1.81
11542333--11542359	10	2.7	10	100	0	54	85	0	7	7	0.75
11542332--11542375	19	2.3	19	84	4	52	81	0	11	6	0.86
11542723--11542818	16	5.8	16	72	16	63	72	0	15	11	1.11
11542726--11542794	8	8.8	8	69	15	54	72	0	14	13	1.12
11542773--11542814	20	2.0	20	82	13	50	80	0	11	7	0.88
11543405--11543614	79	2.7	79	81	7	237	34	10	24	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11544488--11544997	41	12.1	41	77	9	413	24	12	19	43	1.85
11545122--11545158	16	2.3	16	95	0	65	86	0	0	13	0.57
11557907--11557952	23	2.0	23	87	8	67	2	2	15	80	0.91
11559974--11559998	3	8.3	3	100	0	50	32	32	0	36	1.58
11560896--11560937	19	2.2	19	95	0	75	14	7	0	78	0.95
11560954--11560989	11	3.4	11	88	3	56	19	0	0	80	0.71
11560930--11560989	20	3.0	20	73	7	50	21	6	0	71	1.08
11561117--11561174	20	2.9	20	79	5	64	56	10	1	31	1.43
11572667--11572886	119	1.8	119	88	1	334	18	22	15	44	1.86
11572667--11572912	119	2.1	119	85	1	332	18	21	15	44	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138