genome.fa.s124.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  100  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15697973--15698026	26	2.1	26	85	0	72	24	18	24	33	1.97
15698177--15698595	159	2.6	159	77	5	436	25	29	27	17	1.98
15699714--15700176	159	2.9	158	76	5	378	23	29	26	20	1.98
15699715--15700216	158	3.2	158	75	5	467	23	28	26	21	1.99
15699531--15700962	697	2.1	697	80	1	1625	23	28	26	21	1.99
15701267--15701319	26	2.0	26	86	13	74	28	16	24	30	1.97
15701768--15701820	26	2.0	26	96	0	97	28	20	24	26	1.99
15702830--15702882	26	2.0	26	89	7	81	30	18	22	28	1.98
15703886--15704379	158	3.1	157	75	5	490	22	29	26	21	1.99
15704361--15704411	26	2.0	26	84	0	66	27	15	27	29	1.96
15704726--15704778	26	2.0	26	89	7	81	32	20	20	26	1.98
15704751--15705251	158	3.2	158	74	5	413	23	29	27	20	1.99
15705225--15705277	26	2.0	26	88	0	79	28	16	24	30	1.97
15705934--15705986	26	2.0	26	89	7	81	32	20	20	26	1.98
15706117--15706169	26	2.0	26	92	0	88	26	20	26	26	1.99
15706313--15706365	26	2.0	26	89	7	81	32	18	22	26	1.97
15706115--15706471	196	1.8	196	82	1	464	25	29	25	19	1.99
15706814--15706866	26	2.0	26	92	0	88	26	20	26	26	1.99
15708055--15708107	26	2.0	26	85	7	72	28	16	24	30	1.97
15708080--15709435	646	2.1	650	81	4	1570	24	28	26	20	1.99
15709706--15709757	26	2.0	26	92	0	86	26	19	26	26	1.99
15709902--15709954	26	2.0	26	85	7	72	28	18	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15709686--15710384	196	3.6	193	74	13	561	25	26	25	23	2.00
15710086--15710138	26	2.0	26	89	7	81	28	20	24	26	1.99
15709701--15710499	394	2.1	380	81	7	921	24	25	26	23	2.00
15711816--15711868	26	2.0	26	89	7	81	26	20	24	28	1.99
15712181--15712233	26	2.0	26	85	7	72	32	16	22	28	1.96
15713847--15713899	26	2.0	26	96	0	97	28	20	24	26	1.99
15714043--15714095	26	2.0	26	96	0	97	30	22	22	24	1.99
15714383--15714435	26	2.0	26	88	0	79	28	20	24	26	1.99
15715229--15715899	351	1.9	350	80	6	766	23	26	26	22	2.00
15716102--15716154	26	2.0	26	88	0	79	26	18	26	28	1.98
15716405--15716457	26	2.0	26	89	7	81	28	18	24	28	1.98
15716696--15716748	26	2.0	26	85	0	70	30	20	24	24	1.99
15717020--15717419	159	2.5	158	76	4	410	22	29	25	22	1.99
15717393--15717445	26	2.0	26	88	0	79	24	16	28	30	1.97
15717589--15717670	26	3.2	26	94	3	139	28	19	24	28	1.99
15717627--15718448	339	2.4	339	83	4	971	23	27	28	20	1.99
15718293--15718345	26	2.0	26	92	0	88	24	18	28	28	1.98
15718450--15718917	157	3.0	157	77	6	500	23	29	26	20	1.98
15718319--15718990	316	2.1	323	83	5	833	23	29	26	20	1.99
15718967--15719016	26	1.9	26	95	0	91	26	22	30	22	1.99
15719632--15719683	26	2.0	26	88	0	77	26	15	28	28	1.96
15718291--15719755	667	2.2	661	79	8	1572	24	28	26	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15720675--15720726	26	2.0	26	92	0	86	25	17	28	28	1.97
15720872--15720924	26	2.0	26	85	7	72	32	18	20	28	1.97
15720897--15721265	158	2.3	158	79	4	384	24	28	26	21	1.99
15721751--15721802	26	2.0	26	85	7	70	28	15	25	30	1.96
15722669--15722721	26	2.0	26	82	7	63	30	20	22	26	1.98
15722854--15722906	26	2.0	26	96	0	97	24	20	28	26	1.99
15723485--15723517	11	3.0	11	90	0	57	15	27	30	27	1.96
15724641--15724693	26	2.0	26	92	7	90	28	20	24	26	1.99
15726801--15726853	26	2.0	26	88	0	79	30	18	22	28	1.98
15727524--15727576	26	2.0	26	92	7	90	26	22	24	26	2.00
15727721--15727776	26	2.2	26	87	6	78	30	23	17	28	1.97
15727747--15728116	158	2.3	158	76	3	357	25	29	25	20	1.99
15728221--15728270	26	1.9	26	91	0	82	30	24	24	22	1.99
15727905--15728640	342	2.2	339	80	3	798	24	27	26	20	1.99
15728861--15728912	25	2.0	26	88	3	79	25	17	26	30	1.97
15728371--15728949	299	1.9	296	83	4	736	24	27	25	22	1.99
15729216--15729268	26	2.0	26	92	7	90	28	20	24	26	1.99
15729720--15729772	26	2.0	26	85	0	70	28	18	24	28	1.98
15730886--15730941	26	2.2	26	93	0	94	26	19	25	28	1.99
15731265--15731317	26	2.0	26	92	7	90	28	20	24	26	1.99
15731557--15731609	26	2.0	26	92	0	88	30	20	22	26	1.98
15731899--15731951	26	2.0	26	88	0	79	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15732621--15732671	26	2.0	26	88	0	75	29	19	23	27	1.98
15733135--15733186	26	2.0	26	81	7	61	28	17	23	30	1.97
15733320--15733370	26	2.0	26	92	0	84	29	15	27	27	1.96
15734909--15734960	26	2.0	26	92	7	88	28	19	21	30	1.97
15735423--15735475	26	2.0	26	85	7	72	30	18	22	28	1.98
15736638--15736690	26	2.0	26	85	7	72	32	22	22	22	1.98
15736909--15737084	89	2.0	90	79	5	196	19	34	25	20	1.96
15737070--15737122	26	2.0	26	92	0	88	26	20	26	26	1.99
15737466--15737875	158	2.6	155	76	6	410	26	29	27	17	1.98
15738266--15738344	26	3.0	26	87	3	115	29	18	24	27	1.98
15738848--15738900	26	2.0	26	88	0	79	26	18	26	28	1.98
15739460--15739512	26	2.0	26	88	0	79	26	18	26	28	1.98
15739928--15739980	26	2.0	26	85	0	70	24	20	24	30	1.99
15739144--15740051	468	1.9	467	84	5	1199	24	29	26	19	1.98
15740309--15740361	26	2.0	26	92	7	90	28	20	24	26	1.99
15740807--15740859	26	2.0	26	85	0	70	28	18	24	28	1.98
15741530--15741582	26	2.0	26	92	0	88	26	20	26	26	1.99
15741528--15743039	710	2.1	708	81	3	1736	24	28	25	20	1.99
15743670--15744013	158	2.2	156	78	10	367	23	28	26	20	1.99
15743987--15744040	27	2.0	27	89	3	83	22	18	31	27	1.97
15744713--15745119	159	2.6	159	78	6	425	22	28	28	19	1.98
15744895--15745179	156	1.8	154	79	5	333	23	31	25	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15745848--15745900	26	2.0	26	89	7	81	28	18	24	28	1.98
15745874--15746410	158	3.4	153	72	9	420	24	28	27	20	1.99
15746653--15746709	28	2.0	28	100	0	114	14	7	24	54	1.64
15748869--15749158	158	1.8	158	86	4	424	19	26	30	23	1.98
15749130--15749182	26	2.0	26	92	7	90	26	24	20	28	1.99
15749327--15749379	26	2.0	26	96	0	97	26	28	20	24	1.99
15749094--15749463	197	1.9	197	83	5	489	21	27	26	23	1.99
15749401--15749697	159	1.9	158	87	2	443	18	29	30	21	1.97
15749670--15749722	26	2.0	26	89	7	81	28	20	18	32	1.97
15751247--15751676	159	2.7	154	75	9	359	22	25	27	25	2.00
15751247--15751737	158	3.1	156	73	9	433	21	24	27	26	1.99
15751713--15751763	26	2.0	26	92	7	86	27	21	15	35	1.94
15752154--15752206	26	2.0	26	88	0	79	28	22	18	30	1.98
15752288--15752681	158	2.5	158	77	4	409	20	27	28	23	1.99
15753022--15753072	26	2.0	26	88	0	75	29	27	17	25	1.98
15753522--15753574	26	2.0	26	92	7	90	26	24	20	28	1.99
15754074--15754126	26	2.0	26	85	7	72	30	26	16	26	1.97
15754306--15754335	16	1.9	15	93	6	51	33	20	36	10	1.86
15754416--15754468	26	2.0	26	92	0	88	26	26	20	26	1.99
15754600--15754652	26	2.0	26	85	7	72	24	26	20	28	1.99
15754398--15754824	197	2.2	191	81	6	476	21	26	27	24	1.99
15753868--15755184	553	2.5	526	82	5	1482	21	26	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15754971--15755021	26	2.0	26	84	0	66	27	19	19	33	1.96
15755143--15755229	43	2.0	43	100	0	174	25	20	24	29	1.99
15755393--15755445	26	2.0	26	89	7	81	28	26	18	26	1.98
15755734--15755786	26	2.0	26	96	0	97	26	28	20	24	1.99
15755926--15756002	26	3.0	26	94	3	129	28	22	19	29	1.98
15755734--15756198	222	2.1	216	81	6	517	23	24	26	25	2.00
15756146--15756198	26	2.0	26	88	0	79	26	24	20	28	1.99
15756378--15756733	158	2.3	157	76	8	346	19	24	30	25	1.98
15757025--15757077	26	2.0	26	88	0	79	28	22	20	28	1.99
15757209--15757260	26	2.0	25	96	3	95	26	23	21	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138