genome.fa.s124.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  59  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12318439--12318469	9	3.3	9	95	4	53	45	3	32	19	1.66
12327415--12327440	7	3.7	7	100	0	52	42	15	30	11	1.82
12347974--12348018	23	2.0	23	100	0	90	17	26	22	33	1.96
12358416--12358471	24	2.3	25	81	9	71	28	35	17	17	1.93
12358554--12358596	19	2.2	20	95	4	79	11	53	25	9	1.67
12377641--12377745	18	6.1	18	69	11	76	28	4	34	32	1.78
12377640--12377738	33	2.9	35	80	4	121	29	5	30	35	1.79
12378104--12378155	27	1.9	27	88	7	79	30	38	5	25	1.79
12380983--12381041	27	2.2	27	96	0	109	22	23	23	30	1.99
12381549--12381597	25	1.9	26	91	4	82	40	10	2	46	1.49
12381821--12381858	20	2.0	20	89	5	60	60	5	0	34	1.19
12382124--12382204	39	2.1	39	86	2	110	22	61	1	14	1.40
12388329--12388353	2	12.5	2	100	0	50	48	0	0	52	1.00
12407742--12407849	45	2.4	45	82	3	128	22	34	21	22	1.97
12408087--12408171	45	1.9	45	82	2	109	16	31	30	21	1.95
12408209--12408389	45	4.0	45	75	0	182	20	27	28	23	1.99
12416596--12416648	26	2.0	26	92	0	88	26	18	24	30	1.98
12418292--12418432	45	3.1	45	82	0	165	21	26	28	24	1.99
12418307--12418496	45	4.2	45	77	4	168	20	31	26	22	1.98
12418307--12418496	90	2.1	90	81	1	211	20	31	26	22	1.98
12423706--12424101	197	2.0	196	80	3	447	25	26	25	22	2.00
12424267--12424597	149	2.2	148	83	3	396	20	27	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12425243--12425282	18	2.2	18	100	0	80	15	30	32	22	1.94
12427052--12427140	45	2.0	45	84	0	115	19	34	26	19	1.95
12429237--12429538	158	1.9	158	82	5	378	26	26	25	22	2.00
12430985--12431355	90	4.1	90	72	3	262	20	29	29	21	1.98
12430968--12431355	45	8.6	45	74	2	231	20	28	29	21	1.98
12430957--12431301	180	1.9	180	79	4	392	19	27	29	22	1.98
12444309--12444400	45	2.0	45	81	4	105	19	29	34	16	1.94
12444471--12445151	45	15.1	45	73	5	435	20	29	30	18	1.97
12444517--12445144	135	4.7	135	75	5	482	20	29	30	19	1.97
12446116--12446171	26	2.2	26	83	0	67	33	21	14	30	1.93
12445948--12446327	197	1.9	197	80	3	433	22	25	28	23	1.99
12452674--12452842	45	3.8	45	84	0	176	20	32	30	16	1.95
12452774--12452911	69	2.0	69	82	2	170	16	28	34	19	1.94
12452843--12453161	45	7.1	45	77	1	253	17	32	32	16	1.93
12453105--12453364	114	2.3	113	81	2	297	18	30	33	18	1.95
12453332--12453499	45	3.7	45	76	11	141	16	29	35	18	1.93
12453468--12453635	69	2.4	69	96	0	309	19	29	32	17	1.95
12453569--12453725	45	3.5	45	78	2	163	22	31	30	15	1.95
12453468--12453954	228	2.1	227	84	4	624	21	29	32	16	1.95
12453699--12453864	69	2.4	68	81	3	199	18	25	36	19	1.95
12453836--12454042	45	4.6	45	87	1	290	22	33	30	13	1.92
12453810--12454042	90	2.6	90	90	0	360	21	33	31	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12453976--12454105	69	1.9	69	86	0	188	20	32	30	16	1.95
12453932--12454272	114	3.0	114	82	1	407	20	31	31	17	1.95
12454159--12454677	45	11.5	45	78	1	421	18	32	33	16	1.93
12454718--12454879	88	1.8	88	82	2	209	20	30	32	16	1.95
12454856--12454903	24	2.0	24	91	0	78	25	27	27	20	1.99
12454482--12454927	202	2.2	203	83	2	556	19	32	32	15	1.93
12454880--12455038	45	3.5	45	78	0	165	20	32	30	16	1.95
12454501--12455032	202	2.6	202	81	3	523	19	32	31	15	1.94
12455179--12455427	45	5.5	45	81	1	239	17	32	34	15	1.91
12455721--12455851	69	1.9	69	80	3	156	19	29	31	19	1.96
12455801--12455993	45	4.3	45	83	0	215	20	34	31	14	1.92
12455637--12455903	114	2.3	114	78	2	302	19	29	31	19	1.96
12455835--12456152	159	2.0	159	81	1	368	19	31	32	16	1.95
12455703--12456197	204	2.4	203	81	2	537	19	31	31	17	1.95
12456024--12456509	45	10.8	45	77	4	417	17	31	34	17	1.93
12456445--12456578	69	1.9	69	86	3	189	19	29	35	16	1.94
12456514--12456945	45	9.5	45	70	5	240	21	29	32	17	1.96
12456404--12456620	114	1.9	114	82	1	274	18	29	34	17	1.94
12456512--12456761	90	2.8	90	83	1	295	20	30	32	16	1.95
12456310--12456681	204	1.8	203	81	4	462	17	30	34	17	1.93
12456265--12456787	249	2.1	248	82	3	613	18	30	33	17	1.94
12456738--12456785	24	2.0	24	91	0	78	22	18	33	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12456934--12456979	24	1.9	24	86	0	65	23	17	32	26	1.97
12457929--12458363	160	2.7	161	79	6	441	18	29	30	20	1.97
12460855--12461148	45	6.6	44	79	5	268	18	32	31	16	1.93
12460862--12461103	134	1.8	134	85	1	342	18	33	31	16	1.93
12460872--12461148	90	3.1	88	81	7	317	18	32	32	15	1.93
12461080--12461355	69	4.0	69	85	0	345	18	28	34	18	1.95
12461194--12461310	24	5.0	24	67	17	75	17	24	34	23	1.96
12461086--12461355	138	2.0	138	87	1	398	18	27	34	19	1.95
12461287--12461710	45	9.4	45	72	6	250	19	29	32	19	1.96
12461287--12461710	90	4.7	89	72	7	320	19	29	32	19	1.96
12467396--12467787	45	8.7	45	71	2	232	18	30	32	18	1.95
12467398--12467638	90	2.7	89	79	5	277	18	29	34	18	1.95
12467580--12467838	134	1.9	133	79	9	285	18	30	30	19	1.96
12468803--12468855	26	2.0	26	92	0	88	28	28	16	26	1.97
12476871--12477162	45	6.5	44	79	7	243	16	29	34	19	1.94
12476921--12477199	135	2.1	135	79	7	291	17	29	34	18	1.94
12478310--12478694	161	2.4	161	82	0	457	20	29	31	19	1.97
12478311--12478756	161	2.8	161	81	0	408	18	29	31	20	1.97
12493521--12493951	45	9.6	45	69	4	222	18	29	30	20	1.97
12493652--12493924	90	3.0	90	77	3	253	17	29	32	20	1.95
12493930--12493975	24	1.9	24	90	0	74	28	32	19	19	1.96
12493957--12494118	45	3.6	44	79	5	157	19	33	28	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12493954--12494118	90	1.8	90	81	2	206	19	33	28	18	1.96
12494050--12494193	74	1.9	74	88	2	218	18	32	30	18	1.95
12493960--12494261	164	1.8	164	85	0	424	18	31	30	19	1.96
12494124--12494311	45	4.2	45	75	1	162	18	32	29	19	1.95
12494011--12494234	119	1.9	119	86	1	324	17	33	30	18	1.95
12494285--12494357	32	2.2	32	78	2	74	19	35	27	17	1.94
12500936--12500993	26	2.2	26	84	0	80	32	18	20	27	1.97
12501891--12502056	45	3.7	45	73	7	142	18	34	27	19	1.95
12502872--12503029	45	3.5	44	78	3	172	18	32	30	18	1.95
12502841--12503029	90	2.1	90	82	5	222	18	32	30	17	1.95
12502681--12503025	135	2.6	135	73	9	315	18	29	31	20	1.96
12503075--12503208	69	1.9	69	86	0	187	17	32	30	19	1.95
12503144--12503790	45	14.4	45	78	3	561	17	31	31	19	1.95
12502916--12503257	114	3.0	114	87	1	490	17	32	31	18	1.95
12503304--12503791	223	2.2	223	80	3	525	17	31	31	19	1.95
12503799--12503940	45	3.2	44	82	5	153	15	30	30	22	1.95
12503725--12504100	158	2.4	159	82	3	472	18	32	28	20	1.96
12503954--12504146	45	4.3	45	82	2	217	18	33	28	19	1.95
12510948--12511318	171	2.2	171	78	7	412	22	29	27	20	1.98
12511137--12511514	197	1.9	197	82	1	470	22	30	26	20	1.98
12518191--12518319	46	2.8	46	75	5	136	20	33	28	17	1.95
12518474--12518632	45	3.5	45	81	3	185	16	32	31	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12518656--12518963	45	6.8	45	75	4	253	16	30	32	21	1.95
12518480--12518791	159	2.0	159	79	6	346	18	30	31	19	1.96
12518970--12519072	45	2.3	45	84	3	136	16	33	30	19	1.94
12518928--12519303	114	3.3	113	79	5	384	19	31	28	20	1.97
12519015--12519152	69	2.0	69	90	2	215	20	31	28	19	1.97
12519084--12519175	45	2.0	45	82	12	109	16	33	29	20	1.94
12519233--12519336	45	2.3	45	83	0	127	17	30	31	20	1.95
12519359--12519591	88	2.6	88	86	2	315	15	32	33	19	1.93
12519359--12519596	45	5.3	45	88	4	320	15	32	32	19	1.93
12519361--12519636	45	6.2	45	87	1	313	14	31	33	20	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138