genome.fa.s124.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  133  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18940931--18940998	17	3.9	18	90	5	79	69	1	0	29	0.98
18940958--18940998	3	14.3	3	85	10	59	65	2	0	31	1.05
18940946--18941018	20	3.8	20	78	10	62	61	2	2	32	1.24
18941053--18941078	3	8.7	3	100	0	52	69	0	0	30	0.89
18941610--18941933	110	2.9	110	76	4	247	36	14	23	25	1.93
18941437--18941956	114	4.6	113	76	5	442	35	14	24	25	1.94
18942738--18942867	46	2.8	46	81	8	156	20	18	12	48	1.80
18953227--18953287	24	2.4	25	81	8	70	27	1	6	63	1.28
18953380--18953437	26	2.2	26	75	6	64	72	0	5	22	1.04
18953953--18954008	19	2.9	19	81	7	60	50	32	1	16	1.55
18954344--18954508	3	56.7	3	75	11	105	63	3	4	28	1.30
18954349--18954375	14	1.9	14	100	0	54	59	0	3	37	1.15
18955359--18955395	16	2.3	17	90	9	60	78	0	5	16	0.93
18965223--18965330	50	2.2	49	84	1	144	28	18	5	47	1.71
18967359--18967409	18	2.9	17	88	5	75	80	0	13	5	0.89
18968690--18968772	42	2.0	41	88	9	123	30	12	12	45	1.77
18969736--18969840	52	2.0	52	87	7	151	41	7	22	27	1.81
18970037--18970127	35	2.6	36	87	3	123	21	4	31	41	1.73
18971905--18972001	50	1.9	50	81	8	117	35	13	6	45	1.68
18972195--18972565	198	1.9	199	81	9	463	36	10	6	47	1.63
18972900--18972971	31	2.3	31	97	0	135	0	44	2	52	1.15
18972924--18972971	14	3.2	14	72	16	51	0	47	2	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18972911--18972963	17	3.3	17	74	15	67	0	43	3	52	1.19
18973361--18973419	11	5.5	11	73	15	52	69	3	1	25	1.13
18976623--18976673	21	2.5	20	84	9	59	21	33	23	21	1.97
18978909--18978937	12	2.3	13	94	5	51	0	24	0	75	0.80
18981202--18981264	33	1.9	33	83	6	83	15	1	19	63	1.39
18981352--18981402	25	2.0	26	84	3	68	27	5	9	56	1.54
18982234--18982388	11	14.1	11	72	9	102	54	5	3	36	1.40
18982234--18982352	44	2.7	44	88	2	150	54	5	2	36	1.38
18982209--18982388	22	8.4	22	70	12	106	53	5	3	37	1.39
18982808--18982848	21	2.0	21	85	0	55	43	4	14	36	1.67
18982975--18983055	22	3.4	22	68	22	65	39	3	4	51	1.41
18983028--18983064	18	2.1	18	89	0	56	45	2	2	48	1.30
18989032--18989064	16	2.1	16	94	0	57	42	18	3	36	1.66
18991520--18991550	2	15.5	2	93	0	53	45	0	3	51	1.17
18991724--18991782	29	2.0	29	83	0	73	45	3	5	45	1.42
18998943--18998988	23	2.0	23	86	0	65	45	0	0	54	0.99
18999106--18999149	22	2.0	22	100	0	88	36	9	22	31	1.86
19001815--19001897	30	2.8	30	92	0	139	27	14	18	39	1.89
19006614--19006672	31	1.9	31	92	0	100	33	11	13	40	1.81
19006820--19006865	25	2.0	23	83	12	58	21	15	4	58	1.54
19008092--19008498	203	2.0	202	96	0	751	35	19	14	30	1.91
19009366--19009560	99	2.0	99	96	0	363	37	17	9	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19011144--19011179	18	2.0	18	88	0	54	33	0	0	66	0.92
19011597--19011631	17	2.1	17	89	10	54	31	0	0	68	0.90
19012851--19012990	49	2.9	49	82	3	174	38	17	15	27	1.91
19021215--19021250	14	2.4	16	82	17	51	41	16	8	33	1.78
19024764--19024799	18	2.0	18	88	0	54	33	0	0	66	0.92
19026242--19026292	13	3.8	14	87	5	70	76	0	23	0	0.79
19026262--19026303	21	2.0	22	86	13	61	80	0	16	2	0.81
19028482--19028542	3	20.7	3	94	3	106	34	0	0	65	0.93
19029258--19029300	20	2.2	20	88	12	63	9	30	9	51	1.65
19029539--19029580	20	2.0	23	86	13	63	11	16	4	66	1.40
19031294--19031345	19	2.5	20	90	9	79	34	11	13	40	1.81
19033713--19033764	25	2.2	25	86	6	72	25	9	9	55	1.62
19033858--19033891	17	2.0	17	88	0	50	47	0	0	52	1.00
19044145--19044191	21	2.2	21	92	0	76	51	0	0	48	1.00
19044189--19044222	16	2.1	16	88	0	50	70	0	2	26	1.01
19059382--19059505	62	2.0	62	98	0	239	43	28	4	23	1.74
19061817--19061862	21	2.2	21	88	7	67	52	2	0	45	1.13
19061825--19061867	17	2.5	17	81	7	52	51	2	0	46	1.13
19066495--19066524	13	2.3	13	94	0	51	80	3	3	13	0.97
19067295--19068280	370	2.7	370	82	3	1101	22	27	19	30	1.98
19068573--19068619	21	2.2	21	88	7	69	53	2	0	44	1.12
19071102--19071154	9	5.9	9	79	0	61	35	11	15	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19086779--19086836	21	2.9	20	87	10	75	44	1	1	51	1.21
19086955--19087002	22	2.3	22	85	7	64	20	10	2	66	1.32
19089560--19089586	14	1.9	14	100	0	54	44	7	0	48	1.31
19089636--19089665	13	2.3	13	94	0	51	56	3	6	33	1.42
19089679--19089728	15	2.9	17	85	11	59	72	0	4	24	1.02
19089678--19089741	12	5.9	10	75	24	51	75	0	4	20	0.99
19089678--19089738	18	3.6	16	82	14	61	73	0	4	21	1.01
19090162--19090201	17	2.3	17	86	4	53	75	0	2	22	0.93
19093444--19093540	36	2.7	36	88	3	133	47	10	12	29	1.74
19093513--19093686	50	3.5	52	79	12	190	54	6	12	27	1.61
19125477--19125998	270	1.9	274	88	3	802	43	6	6	43	1.55
19125980--19126009	12	2.6	12	94	5	53	23	6	20	50	1.71
19126772--19126852	32	2.6	32	88	2	110	33	11	11	44	1.75
19128658--19128705	23	2.1	23	88	0	69	39	10	8	41	1.69
19129657--19130037	191	2.0	191	87	1	548	27	17	17	37	1.92
19132697--19132741	21	2.1	22	83	4	56	22	2	4	71	1.15
19137666--19137703	11	3.4	11	83	16	51	76	7	7	7	1.17
19140199--19140243	23	1.9	24	86	4	65	73	0	6	20	1.05
19140786--19140847	25	2.5	25	86	2	81	35	3	8	53	1.47
19141364--19141434	23	3.1	22	91	2	106	50	9	0	39	1.36
19141460--19141527	9	6.9	9	74	15	55	61	8	1	27	1.34
19141450--19141513	19	3.3	19	78	8	65	60	10	0	28	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19141450--19141533	30	2.8	31	81	3	91	59	10	1	28	1.38
19141431--19141573	10	14.2	10	69	13	53	53	6	3	35	1.45
19141427--19141582	19	7.9	19	66	17	59	52	7	3	37	1.45
19142387--19142437	19	2.7	19	83	16	70	49	0	0	50	1.00
19142390--19142434	21	2.2	21	92	7	76	51	0	0	48	1.00
19142430--19142497	12	6.1	11	74	17	52	67	0	0	32	0.91
19142443--19142498	10	5.6	10	77	8	51	67	0	0	32	0.91
19155843--19155895	26	2.0	28	85	7	74	50	13	3	32	1.59
19168788--19168877	41	2.2	41	83	0	117	42	15	11	31	1.82
19168942--19168995	28	1.9	28	88	0	81	33	22	3	40	1.71
19171124--19171179	28	2.0	28	92	0	94	33	30	8	26	1.87
19172644--19172679	12	3.1	12	96	4	65	16	13	25	44	1.85
19175693--19175763	7	9.7	7	77	6	52	46	33	0	19	1.50
19175696--19175752	22	2.5	23	88	8	82	49	29	0	21	1.50
19175695--19175752	23	2.6	22	86	5	80	48	29	0	22	1.51
19175693--19175763	30	2.4	29	83	2	88	46	33	0	19	1.50
19180029--19180074	18	2.6	18	82	6	58	45	6	10	36	1.65
19181924--19181977	22	2.5	22	96	0	99	38	16	11	33	1.84
19190150--19190199	25	2.0	25	100	0	100	40	4	12	44	1.60
19190154--19190195	13	3.3	13	73	6	50	35	2	14	47	1.57
19192127--19192162	18	2.1	17	90	10	56	25	0	0	75	0.81
19194830--19194868	18	2.1	18	85	4	51	82	0	12	5	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19195959--19196005	25	1.9	25	91	4	78	21	14	21	42	1.88
19197304--19197497	96	2.0	96	100	0	388	21	12	9	57	1.63
19198688--19198745	26	2.4	23	79	20	66	48	0	0	51	1.00
19198696--19198748	22	2.6	19	78	16	70	50	0	0	49	1.00
19198707--19198752	22	2.0	22	91	4	74	52	0	0	47	1.00
19201728--19201769	16	2.5	17	76	7	50	50	0	2	47	1.14
19201827--19201875	19	2.5	19	93	3	80	51	4	6	38	1.46
19202421--19202459	15	2.5	16	83	8	53	51	0	0	48	1.00
19202856--19202907	21	2.5	21	77	19	56	36	0	0	63	0.95
19202872--19202915	22	2.0	23	82	13	56	40	2	0	56	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138