genome.fa.s124.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  83  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14332542--14333010	184	2.5	185	84	3	597	23	29	28	19	1.98
14334019--14334071	26	2.0	26	85	7	72	24	15	28	32	1.95
14334433--14334999	158	3.6	157	79	4	618	22	29	29	18	1.97
14341531--14341893	194	1.9	195	84	2	498	23	29	24	21	1.99
14341847--14343021	328	3.7	314	77	8	912	22	28	28	20	1.99
14341727--14343021	159	8.1	160	74	7	888	22	29	28	20	1.98
14342329--14343021	158	4.4	155	75	10	485	22	29	28	20	1.98
14342995--14343047	26	2.0	26	96	0	97	24	20	28	26	1.99
14342644--14343561	486	1.9	486	82	3	1139	24	27	26	21	1.99
14344197--14344249	26	2.0	26	89	7	81	28	18	24	28	1.98
14344222--14344564	157	2.2	157	79	5	363	22	27	27	21	1.99
14344538--14344590	26	2.0	26	88	0	79	28	16	26	28	1.97
14344735--14345230	160	3.1	158	79	3	539	23	29	28	18	1.98
14345213--14345263	26	2.0	26	88	0	75	29	17	27	25	1.98
14345934--14345986	26	2.0	26	85	7	72	32	18	22	26	1.97
14346641--14346693	26	2.0	26	92	7	90	28	20	24	26	1.99
14346095--14346778	365	1.9	353	80	7	786	22	29	28	19	1.98
14346667--14347029	158	2.3	157	79	6	394	23	29	26	20	1.99
14347141--14347193	26	2.0	26	92	0	88	26	20	26	26	1.99
14347451--14347738	135	2.1	135	85	3	384	20	34	26	18	1.96
14348476--14348528	26	2.0	26	92	0	88	24	18	28	28	1.98
14349926--14349975	26	1.9	26	100	0	100	28	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14350207--14350237	12	2.6	12	94	0	53	9	35	19	35	1.85
14350298--14350789	158	3.1	157	77	3	513	23	29	26	20	1.99
14350763--14350815	26	2.0	26	89	7	81	26	18	26	28	1.98
14351156--14351208	26	2.0	26	89	7	81	30	20	22	26	1.98
14351181--14351675	159	3.1	157	75	6	437	24	27	27	21	1.99
14352725--14352772	25	1.9	25	91	0	78	27	18	27	27	1.98
14353417--14353469	26	2.0	26	89	7	81	28	15	24	32	1.95
14354737--14354787	26	2.0	26	88	7	77	29	15	27	27	1.96
14355367--14355410	11	4.0	11	96	0	70	22	36	22	18	1.95
14355420--14355498	26	3.0	26	88	3	124	30	18	22	27	1.98
14356122--14356506	158	2.4	158	80	3	400	27	27	23	22	1.99
14355816--14356985	330	3.6	328	74	7	807	24	27	25	21	1.99
14356959--14357010	26	2.0	26	88	7	79	30	17	23	28	1.97
14356984--14357407	159	2.7	159	73	5	408	24	29	27	18	1.98
14357461--14357512	26	2.0	26	92	7	88	26	19	26	26	1.99
14358156--14358208	26	2.0	26	89	7	81	28	18	24	28	1.98
14358181--14358620	159	2.8	157	82	5	476	23	29	28	18	1.98
14358646--14358698	26	2.0	26	85	0	70	26	16	26	30	1.97
14359194--14359245	26	2.0	26	92	0	86	25	19	26	28	1.98
14360324--14360402	26	3.0	26	92	3	133	27	16	25	30	1.97
14360404--14360710	171	1.8	171	80	2	375	22	30	28	18	1.97
14360743--14361238	159	3.1	158	74	8	459	22	29	27	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14361219--14361271	26	2.0	26	88	0	79	26	18	24	30	1.98
14361928--14361979	26	2.0	26	88	7	79	28	17	25	28	1.97
14362593--14363444	159	5.4	156	74	8	529	22	29	26	20	1.99
14362598--14363444	317	2.7	313	82	4	973	22	29	26	20	1.99
14363418--14363470	26	2.0	26	88	0	79	26	18	26	28	1.98
14364646--14364698	26	2.0	26	88	0	79	26	18	26	28	1.98
14364671--14365040	171	2.2	171	80	3	422	22	31	26	20	1.98
14365023--14365092	26	2.7	26	97	0	131	31	20	21	27	1.98
14368205--14368257	26	2.0	26	92	7	90	26	20	26	26	1.99
14368230--14368574	159	2.2	159	79	1	352	23	28	27	21	1.99
14368717--14369259	158	3.4	159	77	6	465	21	29	27	21	1.98
14369233--14369285	26	2.0	26	92	0	88	28	18	24	28	1.98
14369955--14370007	26	2.0	26	85	7	72	33	18	20	26	1.96
14371182--14371233	26	2.0	25	85	3	68	28	19	23	28	1.98
14371391--14371443	26	2.0	26	92	7	90	28	20	24	26	1.99
14371417--14371916	158	3.2	155	76	6	484	22	28	27	21	1.99
14372299--14372351	26	2.0	26	92	7	90	30	16	22	30	1.96
14372542--14372594	26	2.0	26	92	7	90	28	20	24	26	1.99
14372567--14373157	159	3.8	159	74	7	490	22	29	27	19	1.98
14375230--14375282	26	2.0	26	89	7	81	30	20	22	26	1.98
14376086--14376138	26	2.0	26	85	0	70	22	20	26	30	1.98
14377013--14377066	27	2.0	27	85	3	74	29	22	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14377369--14377421	26	2.0	26	92	7	90	28	20	24	26	1.99
14376856--14377664	355	2.3	349	80	7	860	23	30	26	19	1.98
14377844--14377896	26	2.0	26	89	7	81	26	15	26	32	1.95
14378553--14378998	159	2.8	158	75	5	436	23	29	27	18	1.98
14384186--14384688	159	3.2	158	74	5	370	24	29	26	19	1.98
14384662--14384714	26	2.0	26	88	0	79	26	18	26	28	1.98
14384872--14385236	158	2.3	158	80	7	409	25	28	25	20	1.99
14384888--14385337	159	2.8	158	78	6	367	23	29	26	21	1.99
14386413--14386465	26	2.0	26	88	0	79	24	16	28	30	1.97
14387279--14387331	26	2.0	26	89	7	81	28	18	24	28	1.98
14387304--14387731	159	2.7	157	81	5	486	22	29	29	18	1.97
14388679--14388726	25	1.9	25	95	0	87	22	20	31	25	1.98
14389847--14389899	26	2.0	26	85	7	72	28	18	26	26	1.98
14390542--14390591	26	1.9	26	95	0	91	28	16	28	28	1.97
14391624--14391676	26	2.0	26	85	0	70	32	15	24	28	1.95
14391796--14392024	125	1.8	125	84	3	318	27	29	27	16	1.97
14392077--14392129	26	2.0	26	92	0	88	24	18	28	28	1.98
14392456--14392508	26	2.0	26	89	7	81	28	18	24	28	1.98
14392491--14392983	159	3.1	154	77	7	463	21	29	28	21	1.98
14392957--14393009	26	2.0	26	85	0	70	26	18	24	30	1.98
14393154--14393209	26	2.2	26	93	0	94	25	17	26	30	1.97
14392886--14393249	197	1.9	196	86	1	523	23	28	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14394468--14394518	26	2.0	26	88	7	77	29	13	27	29	1.94
14394310--14394676	184	2.0	184	82	3	443	23	26	26	22	2.00
14394980--14395032	26	2.0	26	82	7	63	32	20	20	26	1.98
14395006--14395507	158	3.2	158	78	3	526	23	31	26	18	1.98
14394286--14395691	513	2.8	501	81	5	1513	23	28	26	21	1.99
14395481--14395536	26	2.2	26	93	0	94	25	21	26	26	1.99
14395338--14395739	184	2.2	184	86	0	561	22	27	27	21	1.99
14395665--14395717	26	2.0	26	88	0	79	24	16	28	30	1.97
14396447--14396499	26	2.0	26	89	7	81	30	20	22	26	1.98
14397158--14397210	26	2.0	26	82	7	63	30	16	20	32	1.95
14398575--14399026	184	2.5	181	76	3	447	24	27	27	20	1.99
14400092--14400143	26	2.0	26	92	0	86	26	19	26	26	1.99
14401378--14401434	26	2.2	26	87	0	78	28	17	22	31	1.97
14401879--14401931	26	2.0	26	92	0	88	24	15	28	32	1.95
14402279--14402331	26	2.0	26	85	7	72	24	15	28	32	1.95
14402990--14403453	184	2.5	184	80	7	484	24	27	26	21	1.99
14403371--14403423	26	2.0	26	89	7	81	28	18	24	28	1.98
14403871--14403923	26	2.0	26	92	0	88	24	15	28	32	1.95
14404240--14404292	26	2.0	26	85	0	70	26	20	26	26	1.99
14404442--14404494	26	2.0	26	92	7	90	28	20	24	26	1.99
14404785--14404837	26	2.0	26	88	0	79	28	18	26	26	1.98
14405152--14405496	159	2.2	159	80	6	385	23	29	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14406548--14406600	26	2.0	26	85	7	72	26	16	26	30	1.97
14406758--14406810	26	2.0	26	85	0	70	33	18	18	28	1.95
14407258--14407310	26	2.0	26	85	0	70	26	18	24	30	1.98
14407978--14408029	25	2.0	26	89	10	81	28	21	23	26	1.99
14413035--14413072	15	2.5	15	87	12	51	52	5	36	5	1.47
14417946--14418046	15	6.4	16	73	14	86	77	0	11	10	1.00
14417949--14418046	8	12.6	8	80	10	105	78	0	11	10	0.96
14419052--14419267	42	5.1	42	90	2	328	23	15	23	37	1.93
14419278--14419324	10	4.5	10	79	10	58	82	14	2	0	0.75
14419489--14419528	16	2.5	16	88	12	64	17	0	2	80	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138