genome.fa.s124.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  28  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6846165--6846619	75	5.9	76	76	7	366	29	37	12	21	1.90
6846217--6846619	114	3.5	113	91	3	644	29	36	12	20	1.90
6848563--6848659	43	2.3	40	77	5	95	32	11	15	40	1.83
6848703--6849695	64	15.7	64	75	10	690	39	12	12	35	1.81
6848826--6849691	190	4.5	188	75	12	711	39	12	12	35	1.80
6848765--6849440	254	2.7	254	84	3	835	39	12	12	35	1.81
6848702--6849756	126	8.3	127	75	10	702	38	12	13	35	1.82
6850738--6850786	24	2.0	24	84	7	64	57	0	2	40	1.10
6852035--6852063	3	9.7	3	100	0	58	31	0	0	68	0.89
6853088--6853134	21	2.2	22	84	3	60	70	12	2	14	1.26
6853406--6853440	14	2.6	14	86	13	56	60	0	0	40	0.97
6853954--6853981	1	28.0	1	100	0	56	0	0	0	100	0.00
6855137--6855180	22	2.0	22	91	8	72	52	0	0	47	1.00
6855136--6855192	21	2.7	20	81	8	69	52	0	0	47	1.00
6857912--6857971	25	2.5	23	82	12	75	43	15	18	23	1.87
6864200--6864558	180	2.0	180	95	0	646	39	22	14	23	1.91
6864543--6864592	24	2.1	24	92	0	82	42	26	8	24	1.82
6866063--6866200	72	1.9	73	90	1	224	41	20	13	25	1.88
6866358--6866384	2	13.5	2	100	0	54	51	0	48	0	1.00
6870219--6870248	2	15.0	2	100	0	60	50	0	0	50	1.00
6876236--6876285	3	18.0	3	76	15	54	40	0	0	60	0.97
6876227--6876276	18	2.8	18	80	14	59	46	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6876250--6876281	5	6.2	5	96	3	55	37	0	0	62	0.95
6877335--6877401	35	1.9	35	96	0	125	29	5	10	53	1.59
6877448--6877481	16	2.1	17	88	5	52	50	0	0	50	1.00
6877622--6877647	9	2.9	9	100	0	52	57	11	0	30	1.34
6878734--6878791	30	1.9	30	82	6	73	27	5	6	60	1.44
6880447--6880493	14	3.7	13	78	16	53	27	10	17	44	1.81
6880447--6880493	12	3.8	12	78	18	51	27	10	17	44	1.81
6880679--6880740	15	3.9	15	78	14	70	54	1	0	43	1.09
6881324--6881356	6	5.5	6	92	0	57	33	51	0	15	1.43
6884473--6884522	19	2.5	19	84	12	64	74	0	16	10	1.08
6885950--6885998	23	2.1	24	85	7	66	16	2	6	75	1.09
6885959--6886038	23	3.1	25	76	16	74	18	1	8	71	1.19
6885996--6886044	23	2.1	23	92	0	80	18	2	10	69	1.27
6886299--6886353	20	2.8	20	68	13	51	34	7	3	54	1.46
6897072--6897102	13	2.4	13	94	0	53	83	0	0	16	0.64
6897070--6897103	7	5.0	7	89	7	52	82	0	0	17	0.67
6897731--6897945	90	2.4	89	86	3	304	36	8	20	33	1.84
6898399--6898605	43	4.8	43	79	9	163	32	10	13	43	1.78
6898491--6898620	42	3.1	41	81	9	147	33	10	17	39	1.83
6898859--6898932	6	13.0	6	77	7	66	25	2	5	66	1.27
6898859--6898945	17	5.0	17	78	9	77	24	2	5	67	1.24
6899897--6899947	17	3.1	17	80	8	52	21	9	11	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6899898--6899949	16	3.2	17	78	7	56	23	9	11	55	1.64
6900180--6900220	18	2.2	20	86	8	59	21	7	12	58	1.58
6900983--6901021	10	4.1	9	83	9	51	79	2	10	7	1.02
6901144--6901206	23	3.1	20	77	16	58	58	0	0	41	0.98
6901433--6901471	8	4.9	8	96	0	69	74	0	0	25	0.82
6901442--6901479	16	2.4	16	90	0	58	78	2	2	15	0.97
6901433--6901479	24	2.0	24	86	0	67	74	2	2	21	1.03
6901748--6901816	29	2.3	31	76	14	72	75	1	7	15	1.09
6903588--6903626	18	2.2	18	90	4	62	46	5	0	48	1.24
6903964--6904028	33	1.9	34	84	3	87	75	6	6	12	1.17
6904962--6904987	8	3.2	8	100	0	52	61	0	0	38	0.96
6905036--6905062	14	1.9	14	100	0	54	85	0	14	0	0.61
6905295--6905345	8	6.4	8	86	13	70	76	0	1	21	0.88
6905292--6905336	7	6.1	7	87	5	54	73	0	0	26	0.84
6912321--6912668	172	2.0	172	97	0	660	38	9	14	37	1.79
6923345--6923378	15	2.2	16	89	5	52	38	0	0	61	0.96
6931089--6931151	3	21.0	3	100	0	126	66	0	0	33	0.92
6940204--6940228	9	2.8	9	100	0	50	60	16	0	24	1.36
6945546--6945916	191	2.0	188	80	9	423	35	11	6	47	1.65
6947112--6947159	17	2.9	15	80	17	51	70	8	2	18	1.22
6949886--6949920	18	1.9	18	100	0	70	25	5	17	51	1.67
6963082--6963132	24	2.2	23	82	10	59	13	1	5	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6963158--6963218	10	5.8	10	75	17	61	83	9	0	6	0.80
6963160--6963210	18	2.9	18	86	13	72	82	9	0	7	0.85
6963441--6963473	7	4.7	7	96	0	57	15	30	30	24	1.95
6963903--6963937	18	2.0	17	94	5	61	85	8	5	0	0.73
6964412--6964472	19	3.0	21	81	11	56	22	0	4	72	1.04
6964801--6964844	15	2.9	15	82	0	52	52	27	0	20	1.47
6964871--6964923	23	2.3	23	80	0	61	49	33	0	16	1.47
6964954--6964986	17	2.1	17	88	11	52	57	18	6	18	1.60
6965004--6965046	14	2.9	15	82	6	52	48	16	2	32	1.58
6965006--6965069	15	4.4	14	80	6	56	50	18	3	28	1.62
6965151--6965202	15	3.4	15	81	2	59	50	26	0	23	1.50
6973195--6973225	3	10.3	3	100	0	62	67	0	0	32	0.91
6973396--6973589	49	4.0	49	81	3	205	37	15	12	34	1.86
6986171--6986201	14	2.3	14	94	5	55	74	6	0	19	1.03
6986381--6986451	25	2.8	26	82	4	99	28	26	14	30	1.95
6987469--6987715	121	2.0	120	93	3	424	51	22	8	18	1.73
6988335--6988380	3	15.3	3	100	0	92	65	0	0	34	0.93
6988645--6988752	32	3.5	30	71	14	85	48	26	0	24	1.57
6988661--6988750	7	11.4	8	66	27	50	50	24	1	24	1.57
6988699--6988750	16	3.3	16	80	17	56	50	26	0	23	1.50
6988715--6988816	53	1.9	54	83	2	134	48	28	3	19	1.67
6988768--6988908	39	3.7	39	71	20	102	46	29	3	20	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6988980--6989029	16	3.2	16	80	5	57	56	16	0	28	1.41
6988979--6989121	15	9.3	15	75	11	60	51	23	2	23	1.59
6989019--6989105	23	3.8	22	75	11	68	51	26	2	19	1.58
6989011--6989121	31	3.6	31	76	4	91	51	25	2	20	1.61
6989011--6989121	8	14.5	8	72	13	65	51	25	2	20	1.61
6990892--6990953	23	2.7	24	80	11	69	43	3	6	46	1.45
6991357--6991391	18	1.9	18	88	0	52	62	0	0	37	0.95
6991416--6991455	7	5.7	7	87	0	53	32	27	22	17	1.96
6991608--6991661	27	2.0	27	85	0	72	33	9	5	51	1.57
6995212--6995265	11	5.4	11	75	18	55	42	0	1	55	1.10
6998154--6998268	60	1.9	61	94	1	205	56	1	6	35	1.34
6998830--6998874	9	5.2	9	78	10	58	24	0	22	53	1.46
7001562--7001621	26	2.3	26	79	0	66	28	15	23	33	1.94
7010471--7010642	64	2.7	64	83	8	199	55	6	13	23	1.62
7014204--7014251	24	2.0	24	87	0	69	68	2	25	4	1.18
7014604--7014645	12	3.5	12	86	0	66	88	0	9	2	0.61
7015542--7015585	23	2.0	22	81	4	52	50	4	20	25	1.67
7015931--7016010	21	3.7	21	68	6	70	40	10	16	33	1.82
7015972--7016011	21	1.9	21	94	0	71	37	7	20	35	1.81
7016465--7016846	41	9.3	41	79	5	385	25	12	19	42	1.87
7016461--7016842	206	1.9	206	84	2	525	25	12	19	42	1.86
7016465--7016846	124	3.1	123	82	5	466	25	12	19	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7020926--7020961	13	2.8	13	87	4	56	36	0	0	63	0.94
7023746--7023790	19	2.4	19	81	7	56	73	4	0	22	1.01
7024821--7024973	44	3.6	42	78	12	150	47	14	11	26	1.79
7024821--7024990	42	4.0	43	78	3	155	45	15	12	26	1.81
7034978--7035072	4	24.5	4	73	10	72	72	5	3	18	1.17
7034978--7035069	11	9.1	10	71	21	68	72	5	3	18	1.17
7034982--7035059	26	3.0	26	80	16	106	71	6	3	17	1.22
7035912--7035964	22	2.4	22	78	12	63	50	3	5	39	1.44
7035935--7036003	21	3.2	22	74	13	63	47	5	5	40	1.51
7035987--7036084	22	4.5	21	73	8	79	50	8	5	36	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138