genome.fa.s124.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  102  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15839886--15839938	26	2.0	26	85	7	72	30	28	15	26	1.96
15840654--15840706	26	2.0	26	96	0	97	32	24	16	26	1.97
15840858--15840919	26	2.4	26	97	0	115	25	22	17	33	1.96
15844368--15844420	26	2.0	26	89	7	81	28	26	18	26	1.98
15844394--15844896	159	3.2	157	75	6	494	20	26	28	24	1.99
15845002--15845198	106	1.9	106	82	2	252	15	30	26	27	1.96
15845095--15845751	159	4.1	160	77	8	569	19	28	30	21	1.97
15847468--15847518	25	2.0	26	88	11	79	27	23	19	29	1.98
15847832--15847884	26	2.0	26	88	0	79	26	24	20	28	1.99
15847944--15848363	160	2.6	159	75	4	360	20	25	28	25	1.99
15848336--15848388	26	2.0	26	82	13	65	32	24	16	26	1.97
15848532--15848584	26	2.0	26	85	0	70	26	24	22	26	2.00
15848718--15848768	26	2.0	26	96	0	93	27	27	19	25	1.99
15848447--15848927	184	2.6	184	80	1	489	19	26	29	25	1.98
15849218--15849270	26	2.0	26	89	7	81	26	22	20	30	1.98
15849624--15849676	26	2.0	26	85	0	70	26	24	18	30	1.98
15850355--15850407	26	2.0	26	89	7	81	24	22	22	30	1.99
15850474--15851083	159	3.8	160	77	9	549	18	25	30	24	1.98
15850754--15851074	170	1.9	169	84	3	430	17	27	31	23	1.97
15851908--15851959	26	2.0	26	88	7	79	28	21	19	30	1.97
15853637--15853687	26	2.0	26	92	7	86	27	25	19	27	1.99
15853661--15854162	158	3.2	156	73	8	444	19	27	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15854136--15854188	26	2.0	26	85	7	72	30	24	16	28	1.97
15854870--15854922	26	2.0	26	88	0	79	28	26	18	26	1.98
15855053--15855105	26	2.0	26	85	7	72	30	24	15	30	1.95
15855350--15855789	157	2.8	155	78	6	447	17	28	29	23	1.97
15855762--15855812	26	2.0	26	84	0	66	27	25	15	31	1.96
15856486--15856536	26	2.0	26	92	7	86	27	23	19	29	1.98
15856877--15857378	160	3.2	158	75	4	492	19	26	31	23	1.98
15858125--15858623	157	3.2	156	75	8	479	19	26	30	24	1.98
15858597--15858649	26	2.0	26	92	0	88	24	24	20	30	1.99
15858947--15859372	159	2.7	158	75	9	425	20	24	30	23	1.98
15858940--15859468	158	3.4	155	73	8	413	19	25	29	25	1.99
15866771--15866811	20	2.0	20	100	0	82	29	14	17	39	1.89
15867030--15867619	158	3.7	159	79	2	567	17	28	30	23	1.97
15867592--15867644	26	2.0	26	89	7	81	26	24	20	28	1.99
15872192--15872244	26	2.0	26	85	7	72	30	20	20	28	1.98
15873691--15873743	26	2.0	26	92	7	90	26	24	20	28	1.99
15875283--15875335	26	2.0	26	88	0	79	28	26	16	28	1.97
15875781--15875831	26	2.0	26	84	7	68	27	21	17	33	1.96
15876667--15876719	26	2.0	26	88	0	79	28	26	16	28	1.97
15877165--15877216	26	2.0	25	85	3	68	30	19	19	30	1.96
15877415--15877468	21	2.5	21	78	3	63	29	20	42	7	1.79
15877693--15877750	26	2.2	26	84	9	82	25	22	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15877895--15877947	26	2.0	26	88	0	79	28	30	16	24	1.97
15877921--15878311	159	2.5	157	75	6	383	21	25	30	23	1.99
15878315--15878367	26	2.0	26	88	0	79	28	26	18	26	1.98
15877894--15878683	419	1.9	420	83	3	1038	21	26	28	22	1.99
15883996--15884408	159	2.6	155	79	7	404	19	27	28	24	1.98
15884382--15884434	26	2.0	26	89	7	81	26	22	22	28	1.99
15884591--15884642	26	2.0	26	88	3	79	32	26	15	25	1.95
15884568--15884972	184	2.2	184	83	2	510	21	23	29	25	1.99
15885274--15885326	26	2.0	26	85	7	72	30	24	16	28	1.97
15885642--15885692	26	2.0	26	96	0	93	27	27	19	25	1.99
15886746--15886823	26	3.0	25	92	5	129	26	26	20	25	1.99
15887335--15887387	26	2.0	26	85	0	70	28	28	18	24	1.98
15887411--15887731	157	2.0	156	80	4	360	18	28	29	22	1.97
15888300--15888352	26	2.0	26	89	7	81	28	24	18	28	1.98
15888509--15888561	26	2.0	26	92	7	90	26	26	20	26	1.99
15888657--15889037	159	2.4	159	74	2	363	19	26	29	23	1.98
15889010--15889062	26	2.0	26	89	7	81	30	22	16	30	1.96
15889166--15889562	159	2.5	159	78	6	448	19	25	29	24	1.98
15889537--15889588	26	2.0	26	88	7	79	28	21	21	28	1.98
15888663--15889677	525	1.9	526	83	3	1308	20	26	29	22	1.99
15890579--15891075	158	3.2	155	75	5	480	20	26	28	24	1.99
15891051--15891101	26	2.0	26	88	7	77	29	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15891247--15891298	26	2.0	26	96	3	97	26	28	21	23	1.99
15890892--15891456	196	3.0	187	79	8	599	21	25	28	24	1.99
15891328--15891615	159	1.8	157	85	3	407	19	26	28	25	1.99
15891710--15891742	11	3.0	11	90	0	57	27	24	27	21	1.99
15892166--15892218	26	2.0	26	92	7	90	26	22	20	30	1.98
15893036--15893087	26	2.0	26	85	7	70	28	21	19	30	1.97
15894316--15894368	26	2.0	26	88	0	79	28	26	18	26	1.98
15900464--15900668	105	1.9	106	81	4	245	20	32	20	26	1.97
15900960--15901012	26	2.0	26	89	7	81	28	24	18	28	1.98
15901671--15901723	26	2.0	26	92	0	88	26	28	22	22	1.99
15901379--15901744	196	1.9	196	83	2	484	21	27	28	23	1.99
15901697--15902200	158	3.2	158	75	5	405	19	26	30	23	1.98
15902171--15902223	26	2.0	26	85	0	70	26	28	18	26	1.98
15902551--15902968	158	2.6	158	79	4	466	17	27	30	24	1.97
15902941--15902993	26	2.0	26	92	7	90	26	22	20	30	1.98
15903313--15903368	26	2.2	26	87	6	78	23	21	26	28	1.99
15904484--15904535	26	2.0	25	88	3	77	32	21	15	30	1.94
15905815--15905867	26	2.0	26	89	7	81	28	24	16	30	1.97
15906159--15906209	26	2.0	26	88	0	75	29	27	15	27	1.96
15906185--15906686	159	3.2	159	72	8	446	21	25	28	24	1.99
15906661--15906713	26	2.0	26	85	7	72	30	22	18	28	1.98
15906553--15906942	197	2.0	197	81	3	462	23	25	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15906822--15907253	184	2.3	183	83	1	495	21	25	27	25	1.99
15907068--15907568	158	3.2	157	76	7	437	22	26	28	23	1.99
15907542--15907594	26	2.0	26	85	7	72	28	22	18	30	1.98
15907688--15907714	13	2.1	13	100	0	54	14	55	14	14	1.70
15909106--15909158	26	2.0	26	85	7	72	28	24	16	30	1.97
15909238--15909624	159	2.4	159	81	1	416	17	27	30	24	1.97
15910160--15910212	26	2.0	26	92	0	88	30	26	16	26	1.97
15910345--15910397	26	2.0	26	89	7	81	26	22	20	30	1.98
15910553--15910605	26	2.0	26	88	0	79	24	28	20	26	1.99
15910616--15911082	159	2.9	158	79	8	475	17	27	31	23	1.97
15911315--15911349	16	2.2	16	89	0	52	28	31	28	11	1.92
15911578--15911630	26	2.0	26	92	0	88	26	30	20	22	1.98
15911604--15912105	158	3.2	156	74	8	467	19	29	28	21	1.98
15912079--15912131	26	2.0	26	82	7	63	32	24	16	26	1.97
15912421--15912473	26	2.0	26	85	7	72	28	22	18	30	1.98
15913156--15913208	26	2.0	26	89	7	81	28	26	18	26	1.98
15913182--15913683	158	3.2	156	75	5	452	20	27	29	22	1.98
15913853--15913905	26	2.0	26	96	0	97	26	24	20	28	1.99
15914916--15914968	26	2.0	26	96	0	97	26	28	20	24	1.99
15915877--15915928	25	2.0	26	89	10	81	30	25	15	28	1.96
15916254--15916306	26	2.0	26	96	0	97	26	28	20	24	1.99
15916585--15916690	53	2.0	54	80	9	119	26	25	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15916813--15916863	26	2.0	26	92	7	86	27	27	19	25	1.99
15917380--15917834	159	2.9	158	80	4	497	17	27	30	23	1.97
15917807--15917857	26	2.0	26	92	0	84	25	23	19	31	1.98
15918504--15918556	26	2.0	26	88	0	79	30	28	16	24	1.97
15918530--15919030	158	3.2	158	75	8	462	18	28	29	23	1.98
15919004--15919056	26	2.0	26	92	0	88	24	24	20	30	1.99
15919792--15920250	158	2.9	159	77	4	392	19	28	30	22	1.98
15920228--15920278	26	2.0	26	88	7	77	29	23	17	29	1.97
15920948--15920998	26	2.0	26	92	7	86	27	29	15	27	1.96
15927106--15927158	26	2.0	26	89	7	81	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138