genome.fa.s124.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  131  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18473095--18473137	17	2.5	17	88	0	59	48	39	2	9	1.48
18474210--18474297	24	3.7	23	82	8	104	32	13	5	47	1.66
18477006--18477226	109	2.0	109	97	0	415	37	13	11	38	1.80
18484333--18484582	125	2.0	124	99	0	491	33	15	15	35	1.89
18494176--18494392	109	2.0	109	99	0	425	38	11	12	37	1.80
18497116--18497186	24	3.0	24	91	0	106	47	2	12	36	1.56
18500207--18500249	17	2.5	17	88	0	59	9	2	39	48	1.48
18500233--18500312	19	4.3	19	74	6	56	17	3	37	41	1.68
18500302--18500399	19	5.3	19	76	14	105	14	4	36	44	1.64
18500303--18500398	37	2.6	37	88	3	140	13	4	36	45	1.63
18503231--18503267	18	2.0	20	89	10	60	16	2	40	40	1.62
18503228--18503300	31	2.4	30	80	13	78	15	4	38	42	1.66
18503344--18503394	19	2.7	19	96	0	93	11	3	39	45	1.59
18503385--18503429	14	3.2	14	90	6	65	22	0	31	46	1.52
18506970--18507301	163	2.0	164	86	4	465	28	15	21	34	1.94
18507494--18507535	20	2.1	21	86	8	61	19	2	33	45	1.63
18507498--18507574	33	2.3	32	78	6	91	20	3	32	42	1.70
18507568--18507715	13	11.2	13	73	13	124	14	2	35	47	1.55
18507590--18507689	19	5.2	18	74	18	85	14	1	37	48	1.50
18507520--18507712	7	29.0	7	70	19	92	15	3	35	45	1.62
18510423--18510480	25	2.3	25	84	0	80	60	15	3	20	1.49
18511477--18511520	22	2.0	22	82	4	54	22	9	0	68	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18511768--18511804	13	2.8	14	88	8	51	54	8	0	37	1.30
18513260--18513286	3	9.0	3	100	0	54	66	0	0	33	0.92
18513811--18513955	72	2.0	72	91	0	236	33	8	17	40	1.80
18514902--18514939	15	2.6	15	87	4	51	7	23	2	65	1.32
18515461--18515584	62	2.0	62	90	0	194	27	16	4	51	1.62
18522351--18522381	16	1.9	16	100	0	62	35	25	6	32	1.82
18527329--18527366	17	2.2	17	86	9	51	55	5	5	34	1.45
18540130--18540166	19	1.9	19	100	0	74	27	10	24	37	1.88
18540539--18540594	27	2.1	27	100	0	112	44	14	7	33	1.72
18541649--18542098	96	4.7	95	80	7	430	34	15	14	34	1.88
18541732--18542104	191	2.0	191	82	6	470	35	15	13	34	1.87
18542454--18542491	19	2.0	20	94	5	69	7	7	0	84	0.79
18542449--18542503	11	5.2	10	80	10	56	5	9	1	83	0.86
18543391--18543473	6	13.2	6	77	20	82	18	1	2	78	0.93
18543392--18543470	39	2.1	38	88	6	117	17	1	2	78	0.93
18543391--18543484	33	2.9	33	79	17	108	18	2	3	76	1.02
18543570--18543620	22	2.4	21	87	6	68	23	5	7	62	1.44
18543570--18543629	20	2.9	20	76	14	59	23	5	6	65	1.37
18544467--18544492	4	6.5	4	100	0	52	23	0	0	76	0.78
18544467--18544610	5	28.6	5	76	15	88	19	2	2	75	1.02
18544467--18544610	11	14.3	10	74	16	88	19	2	2	75	1.02
18544499--18544610	37	3.0	37	76	12	106	16	3	1	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18544479--18544615	17	7.8	16	70	21	78	18	3	2	75	1.06
18544627--18545014	57	6.8	57	86	4	512	43	7	14	35	1.73
18544635--18545014	116	3.3	115	88	4	554	42	7	14	36	1.74
18547402--18547469	34	2.0	34	97	0	127	35	16	14	33	1.89
18555051--18555169	58	2.1	58	90	0	184	41	9	11	37	1.74
18556487--18556525	15	2.5	15	87	4	51	43	0	10	46	1.37
18556619--18556662	19	2.3	18	81	11	52	72	0	2	25	0.96
18556765--18556819	24	2.3	25	78	12	62	54	0	1	43	1.10
18556841--18556883	20	2.2	20	82	0	50	44	4	2	48	1.36
18557595--18557664	28	2.4	26	76	19	68	28	2	2	65	1.21
18573526--18573582	30	1.9	30	96	0	105	33	12	12	42	1.80
18575594--18575708	17	6.7	16	72	14	77	30	13	14	41	1.84
18575648--18575708	18	3.5	17	79	18	63	31	13	14	40	1.84
18575614--18575724	36	3.1	35	82	8	118	29	14	12	43	1.82
18586208--18586540	62	5.3	61	67	10	199	35	13	17	33	1.90
18586782--18586828	24	1.9	25	82	4	60	51	14	4	29	1.62
18596066--18596100	13	2.7	13	86	0	52	28	2	2	65	1.21
18597275--18597858	161	3.6	160	82	4	660	31	10	15	42	1.80
18599303--18599424	34	3.6	34	85	4	158	39	15	9	35	1.81
18599178--18599434	101	2.5	101	72	13	224	35	14	11	38	1.83
18599178--18599443	67	4.0	65	72	11	209	35	14	11	38	1.82
18599178--18599427	34	7.4	34	75	8	111	36	15	11	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18601095--18601134	21	1.9	21	89	0	62	40	25	0	35	1.56
18601459--18601507	20	2.5	19	74	9	53	65	4	0	30	1.11
18622140--18622182	17	2.5	17	96	0	77	51	6	4	37	1.50
18623145--18623181	19	1.9	19	94	0	65	32	8	8	51	1.61
18635471--18635500	8	3.6	8	91	8	51	23	40	23	13	1.90
18636288--18636315	2	14.0	2	100	0	56	50	0	0	50	1.00
18638254--18638292	18	2.1	18	85	4	51	30	7	0	61	1.24
18650571--18650618	23	2.0	24	84	11	64	47	2	0	50	1.12
18650567--18650624	25	2.3	24	80	11	64	51	1	0	46	1.11
18652102--18652143	18	2.3	18	91	4	66	54	0	0	45	0.99
18652254--18652317	25	2.5	26	92	2	103	46	7	7	37	1.62
18652301--18652399	16	6.2	16	66	9	58	54	10	5	30	1.55
18663405--18663446	16	2.6	16	88	3	66	14	11	14	59	1.61
18672097--18672155	27	2.2	27	84	6	75	27	1	5	66	1.22
18673367--18673428	23	2.9	21	80	9	72	20	16	14	48	1.81
18673367--18673430	20	3.0	20	84	6	74	20	15	15	48	1.81
18677521--18677552	16	2.0	16	93	0	55	50	6	9	34	1.60
18678517--18678583	35	1.9	35	87	0	98	26	14	19	38	1.91
18686757--18686802	24	2.0	24	83	12	60	54	0	10	34	1.36
18690753--18690810	29	2.0	29	83	6	73	25	0	32	41	1.56
18692887--18693228	168	2.0	168	98	0	666	31	15	14	38	1.88
18695139--18695183	21	2.1	21	84	8	56	62	4	0	33	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18697622--18697718	44	2.2	45	80	9	110	48	11	6	34	1.64
18698441--18698477	2	18.5	2	94	0	65	45	0	2	51	1.15
18716216--18716261	19	2.4	19	96	0	83	26	10	13	50	1.74
18717166--18717199	15	2.3	15	100	0	68	38	20	17	23	1.93
18726076--18726202	57	2.2	58	84	1	157	40	9	16	33	1.81
18727287--18727505	108	2.0	107	79	7	230	39	6	11	42	1.68
18728131--18728282	58	2.7	58	90	5	233	38	9	17	34	1.83
18729261--18729388	40	3.1	41	80	8	138	42	10	14	32	1.78
18729402--18729590	72	2.6	73	82	1	245	50	6	7	35	1.57
18729567--18729602	18	1.9	19	88	5	56	50	2	2	44	1.31
18729641--18729720	37	2.2	37	84	4	99	51	8	2	37	1.47
18731092--18731128	19	1.9	19	89	10	58	70	0	5	24	1.08
18731095--18731154	26	2.3	26	83	13	70	73	1	1	23	1.01
18731285--18731351	30	2.2	30	97	0	125	17	43	0	38	1.50
18731298--18731348	15	3.3	16	72	10	61	21	41	0	37	1.54
18740157--18740194	16	2.3	16	86	13	51	23	2	5	68	1.23
18745775--18745814	9	4.8	8	93	3	53	42	0	2	55	1.13
18745782--18745814	9	3.8	9	96	4	59	45	0	0	54	0.99
18752277--18752310	16	2.1	17	88	5	52	20	11	2	64	1.39
18752280--18752335	29	1.9	29	85	7	78	23	12	1	62	1.39
18764816--18764883	33	2.0	34	94	2	120	52	11	8	26	1.67
18770377--18770468	48	1.9	48	81	0	112	42	6	11	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18772363--18772645	68	4.2	68	76	12	234	44	9	9	36	1.69
18772943--18772997	27	2.0	27	92	0	92	41	7	3	47	1.49
18790384--18790426	21	2.0	23	86	9	63	37	0	2	60	1.10
18794880--18794938	26	2.3	26	87	0	82	27	15	16	40	1.89
18795043--18795074	15	2.1	15	94	0	55	21	3	25	50	1.64
18796119--18796145	2	13.5	2	100	0	54	51	0	0	48	1.00
18797365--18797410	21	2.2	21	84	7	58	54	0	0	45	0.99
18797375--18797436	29	2.1	30	88	8	92	61	0	0	38	0.96
18798893--18798949	29	2.0	29	89	3	89	43	15	1	38	1.57
18802015--18802089	33	2.2	33	95	2	132	52	12	14	21	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138