genome.fa.s124.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  135  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19489185--19489229	2	22.5	2	100	0	90	51	0	0	48	1.00
19489338--19489542	100	2.1	100	96	0	376	32	20	18	28	1.96
19489809--19489841	3	11.0	3	93	0	57	63	3	0	33	1.10
19492515--19492895	192	2.0	192	98	0	744	38	15	17	29	1.90
19494752--19494797	3	15.7	3	95	4	85	67	0	0	32	0.91
19494756--19494796	20	2.0	20	100	0	82	65	0	0	34	0.93
19496227--19496251	2	12.5	2	100	0	50	52	0	0	48	1.00
19496456--19496485	2	15.0	2	100	0	60	50	0	0	50	1.00
19497285--19497348	15	4.2	15	78	6	58	79	4	6	9	1.04
19497785--19497840	29	2.0	29	86	10	80	55	1	1	41	1.21
19502937--19503052	60	1.9	60	82	8	146	39	9	18	31	1.83
19505208--19505362	51	3.0	51	81	2	177	36	16	9	37	1.82
19505459--19505518	24	2.4	25	86	8	77	21	5	0	73	1.02
19505887--19505941	20	2.8	19	78	10	58	85	7	3	3	0.82
19505899--19505941	12	3.7	12	78	3	52	88	4	4	2	0.70
19506395--19506432	16	2.4	16	86	0	58	10	2	10	76	1.12
19511179--19511220	20	2.1	20	86	8	59	23	9	7	59	1.53
19519408--19519432	2	12.5	2	100	0	50	0	0	48	52	1.00
19520629--19520665	17	2.1	19	85	10	51	45	5	0	48	1.25
19522329--19522407	32	2.5	32	87	2	106	46	13	7	31	1.72
19523854--19523906	19	2.7	21	82	8	67	56	5	3	33	1.41
19524351--19524396	23	2.0	24	91	4	76	34	0	8	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19523053--19525483	816	3.0	814	88	3	3647	42	6	7	43	1.60
19524828--19525328	270	1.9	270	89	1	790	42	4	7	45	1.52
19525947--19526025	40	2.0	40	94	0	140	36	11	13	37	1.81
19531043--19531125	20	4.3	19	75	4	60	61	6	3	28	1.37
19531094--19531133	20	2.0	20	90	5	62	60	2	5	32	1.32
19531108--19531196	34	2.6	36	78	12	105	62	2	5	29	1.30
19531309--19531342	9	3.7	9	88	4	50	64	0	0	35	0.94
19531378--19531454	17	4.5	17	72	13	59	72	3	3	19	1.16
19532052--19532099	25	2.0	24	87	4	69	77	4	2	16	1.03
19532958--19533000	17	2.5	17	88	3	59	65	0	2	32	1.06
19533521--19533590	31	2.2	33	75	17	76	47	18	18	15	1.83
19533440--19533793	186	1.9	186	88	1	539	47	14	18	19	1.83
19533638--19534412	119	6.5	119	76	4	614	45	15	19	18	1.86
19533656--19534407	238	3.2	234	82	4	796	45	15	19	19	1.86
19533676--19534407	357	2.1	357	80	4	850	45	15	20	18	1.86
19545553--19545606	6	9.0	6	83	16	60	83	0	1	14	0.73
19545970--19546019	21	2.4	21	75	0	55	66	10	6	18	1.42
19546667--19546701	17	2.0	18	94	5	63	28	5	5	60	1.43
19546674--19546709	17	2.2	17	90	5	56	27	5	5	61	1.41
19546841--19546898	27	2.1	27	81	12	66	17	10	3	68	1.31
19546885--19546927	19	2.3	18	84	7	59	18	0	9	72	1.11
19548052--19548143	45	2.0	45	100	0	184	26	10	21	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19549486--19549555	26	2.8	26	73	16	67	34	0	2	62	1.10
19552546--19552572	2	13.5	2	100	0	54	51	0	0	48	1.00
19552681--19552985	100	3.1	100	97	0	567	33	20	18	28	1.96
19553252--19553284	3	11.0	3	93	0	57	63	3	0	33	1.10
19555985--19556365	192	2.0	192	99	0	753	38	15	17	29	1.90
19558223--19558260	3	12.7	3	100	0	76	68	0	0	31	0.90
19559703--19559733	2	15.5	2	100	0	62	51	0	0	48	1.00
19559928--19559953	2	13.0	2	100	0	52	50	0	0	50	1.00
19560753--19560817	15	4.3	15	76	5	60	80	4	6	9	1.03
19560836--19560935	29	3.5	28	70	23	82	50	4	3	43	1.36
19561257--19561312	29	2.0	29	86	10	80	55	1	1	41	1.21
19565513--19566186	350	1.9	349	83	3	872	36	15	16	32	1.90
19566381--19566503	60	2.1	59	82	10	144	38	9	21	30	1.86
19568683--19568791	54	2.0	56	85	3	150	35	17	9	37	1.82
19568740--19568894	51	3.0	51	81	4	170	36	16	9	37	1.81
19568991--19569049	24	2.4	24	88	5	82	22	3	0	74	0.96
19568991--19569049	14	4.4	14	77	18	56	22	3	0	74	0.96
19569418--19569475	13	4.8	12	78	8	55	79	8	1	10	1.01
19569449--19569488	19	2.1	19	85	0	53	82	2	5	10	0.91
19569941--19569979	17	2.4	17	86	4	62	10	0	10	79	0.94
19573288--19573329	20	2.1	20	86	8	59	23	9	7	59	1.53
19583189--19583234	23	2.0	24	91	4	76	34	0	8	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19582851--19584167	270	4.9	270	71	13	908	42	5	7	44	1.57
19582553--19584322	817	2.2	811	88	3	2643	41	6	8	43	1.61
19584787--19584905	40	3.0	40	96	0	211	36	11	14	36	1.83
19592902--19592934	6	5.5	6	100	0	66	36	0	30	33	1.58
19595695--19595740	17	2.5	19	86	10	60	6	2	10	80	0.98
19596141--19596188	24	2.0	24	88	8	71	54	4	4	37	1.39
19606298--19606338	4	10.5	4	84	5	57	75	4	0	19	0.98
19606296--19606335	19	2.1	19	90	0	62	77	5	0	17	0.94
19607063--19607121	19	3.1	19	75	4	57	38	28	0	32	1.57
19607440--19607547	43	2.5	42	84	8	139	43	16	12	26	1.84
19608208--19608251	22	2.0	22	86	8	63	25	0	29	45	1.54
19608721--19608857	60	2.2	61	80	15	149	36	13	20	29	1.90
19609046--19609412	43	8.5	44	79	7	263	42	17	13	25	1.87
19609120--19609435	43	7.4	42	80	5	292	45	16	12	25	1.82
19615145--19615186	21	2.1	21	86	8	61	45	0	0	54	0.99
19615202--19615251	23	2.3	23	86	6	68	16	6	0	78	0.95
19615225--19615281	25	2.2	24	82	14	62	15	3	0	80	0.84
19615366--19615405	19	2.2	18	86	4	53	77	5	2	15	1.04
19615371--19615412	19	2.2	19	83	8	50	76	4	7	11	1.15
19616248--19616275	11	2.5	11	100	0	56	92	0	7	0	0.37
19617988--19618092	55	1.9	56	88	2	131	15	13	11	60	1.60
19626439--19626476	16	2.3	17	90	4	60	81	0	2	15	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19626435--19626475	21	2.0	21	85	4	57	82	0	2	14	0.76
19627308--19627335	6	4.7	6	100	0	56	53	0	0	46	1.00
19630257--19630354	48	2.1	48	86	3	146	25	13	8	53	1.67
19630967--19631021	21	2.8	19	79	15	67	74	3	0	21	0.97
19631752--19631792	19	2.2	19	90	0	64	39	31	0	29	1.57
19634644--19634679	17	2.0	19	89	10	58	72	11	8	8	1.29
19639303--19639367	3	21.3	3	87	3	67	64	6	0	29	1.17
19639700--19639747	24	2.0	24	87	4	69	16	0	8	75	1.04
19639706--19639734	15	1.9	15	100	0	58	17	0	6	75	1.01
19640061--19640127	22	3.0	22	82	0	80	31	16	20	31	1.95
19640129--19640358	126	1.8	126	84	1	318	33	13	16	36	1.88
19642592--19642661	29	2.5	26	82	11	77	72	0	5	21	1.05
19642643--19642723	27	2.9	27	76	9	83	70	2	7	19	1.23
19643087--19643125	20	2.0	20	94	0	69	38	10	7	43	1.67
19643228--19643276	20	2.3	22	86	6	66	67	18	6	8	1.37
19643585--19643646	3	20.0	3	86	6	88	64	0	1	33	1.03
19643585--19643646	28	2.2	28	88	5	90	64	0	1	33	1.03
19644091--19644124	17	1.9	18	88	5	52	58	8	8	23	1.56
19644113--19645041	65	14.4	64	72	11	456	43	11	21	23	1.85
19644113--19644777	129	5.2	128	73	11	335	43	11	21	23	1.85
19644216--19644669	250	1.8	250	80	6	553	43	10	21	24	1.84
19644464--19645063	66	9.2	65	73	6	327	44	11	20	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19645239--19645282	17	2.6	17	85	0	61	29	6	22	40	1.80
19646779--19646818	18	2.2	18	86	8	55	10	5	2	82	0.91
19650639--19650668	3	9.7	3	92	7	51	33	0	0	66	0.92
19650742--19650781	12	3.3	12	85	0	53	77	0	5	17	0.94
19650745--19650786	17	2.5	17	84	3	59	78	0	4	16	0.91
19650758--19650804	23	2.1	21	84	7	58	68	0	12	19	1.21
19651687--19651732	3	15.3	3	100	0	92	67	0	0	32	0.91
19652110--19652134	5	5.0	5	100	0	50	0	0	20	80	0.72
19661665--19661730	3	22.0	3	90	0	105	65	3	1	30	1.17
19663397--19663462	33	2.0	34	82	8	82	74	0	6	19	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138