genome.fa.s124.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  35  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8190593--8190666	34	2.2	34	92	0	121	17	14	18	48	1.81
8196527--8196600	36	2.1	36	89	2	114	54	4	16	25	1.60
8197799--8197823	2	12.5	2	100	0	50	0	48	0	52	1.00
8200557--8200597	17	2.4	17	91	4	64	48	12	14	24	1.78
8204349--8204417	34	2.0	34	97	0	129	42	18	8	30	1.81
8210633--8210677	23	2.0	23	90	0	72	37	4	15	42	1.67
8211266--8211312	19	2.6	18	86	6	67	25	2	10	61	1.39
8211709--8211738	10	3.0	10	95	0	51	66	3	0	30	1.07
8212990--8213025	2	18.0	2	88	0	54	44	0	0	55	0.99
8219089--8219125	18	2.2	18	85	9	51	40	0	5	54	1.24
8223606--8223643	3	12.7	3	100	0	76	68	0	0	31	0.90
8224016--8224090	27	2.8	24	79	18	71	70	6	6	16	1.30
8227381--8227418	19	2.1	19	85	9	53	50	7	0	42	1.31
8230128--8230205	33	2.4	33	86	0	102	47	5	10	37	1.60
8236062--8236096	17	2.1	17	89	5	54	68	0	0	31	0.90
8236275--8236317	22	2.0	22	86	9	61	25	0	0	74	0.82
8239780--8239844	20	3.3	20	75	12	71	80	0	10	9	0.92
8239778--8239844	13	5.2	13	77	12	57	79	0	10	10	0.95
8240045--8240079	17	2.1	17	88	0	52	80	2	14	2	0.95
8242502--8242539	20	1.9	20	88	0	58	10	0	5	84	0.77
8242747--8242793	23	2.0	23	84	8	60	74	10	0	14	1.07
8243121--8243164	20	2.2	20	100	0	88	63	9	9	18	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8243121--8243172	20	2.6	20	93	0	77	63	9	9	17	1.50
8243481--8243530	9	5.7	9	80	2	57	18	6	0	76	0.99
8247713--8247764	20	2.5	21	75	12	54	46	0	0	53	1.00
8248171--8248237	23	2.9	24	77	18	72	38	0	1	59	1.06
8247704--8248791	459	2.4	445	83	7	1345	38	9	7	44	1.65
8253632--8253676	19	2.4	19	84	0	63	77	2	11	8	1.07
8256332--8256367	18	2.1	17	89	5	54	11	0	5	83	0.80
8256576--8256621	23	2.0	23	83	8	58	78	10	0	10	0.97
8256948--8256990	19	2.2	20	95	4	79	62	9	9	18	1.51
8257311--8257351	8	4.9	8	82	11	55	12	7	0	80	0.90
8257311--8257351	18	2.4	16	84	8	55	12	7	0	80	0.90
8261434--8261487	26	2.1	27	82	6	67	38	0	1	59	1.08
8261972--8262039	23	3.0	23	77	18	72	38	0	1	60	1.06
8261514--8262599	462	2.4	447	84	6	1337	39	8	7	44	1.64
8265192--8265310	39	3.1	39	78	4	141	28	18	26	26	1.98
8266590--8266623	2	17.5	2	87	6	52	47	0	2	50	1.16
8270931--8270955	12	2.1	12	100	0	50	24	28	8	40	1.83
8270956--8271008	18	2.9	18	91	2	79	28	41	3	26	1.73
8276769--8276868	42	2.4	42	87	1	137	47	10	12	31	1.74
8289134--8289171	16	2.3	17	90	4	60	18	0	0	81	0.69
8289823--8289900	41	1.9	41	84	5	104	39	3	6	50	1.46
8290206--8290240	15	2.2	16	90	5	54	71	8	0	20	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8301205--8301246	20	2.1	20	95	0	75	23	4	40	30	1.75
8307329--8307372	22	2.0	22	86	0	61	31	13	9	45	1.75
8307511--8307558	22	2.1	24	84	7	64	16	14	10	58	1.63
8311314--8311356	22	2.0	22	90	9	70	32	9	11	46	1.72
8312132--8312172	20	2.0	20	85	4	55	43	19	12	24	1.85
8313589--8313646	27	2.2	26	81	3	62	36	12	0	51	1.39
8314367--8314413	16	2.9	16	75	12	51	55	27	4	12	1.56
8327698--8327931	115	2.0	115	95	1	425	39	14	7	38	1.75
8336151--8336186	15	2.5	15	95	4	65	27	5	25	41	1.77
8336958--8337186	115	2.0	115	82	5	275	31	20	19	28	1.97
8341052--8341173	61	2.0	62	90	1	192	30	1	12	55	1.46
8343718--8343771	24	2.1	24	83	10	63	5	9	12	72	1.27
8346758--8346821	22	2.8	23	80	7	76	37	39	10	12	1.78
8347738--8347787	3	16.7	3	83	8	57	64	4	2	30	1.23
8348157--8348284	30	4.4	28	78	9	107	49	30	0	19	1.54
8348233--8348284	14	3.7	14	82	10	61	50	32	0	17	1.47
8348282--8348439	14	10.9	14	66	16	63	52	27	1	18	1.53
8348261--8348334	21	3.5	20	75	10	67	51	33	0	14	1.43
8348150--8348392	122	2.0	124	83	7	307	50	29	0	19	1.51
8348369--8348409	16	2.7	15	88	7	57	60	24	2	12	1.43
8350639--8350682	18	2.4	18	81	7	54	79	13	4	2	0.98
8350639--8350682	19	2.5	17	85	7	52	79	13	4	2	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8353758--8353797	20	1.9	21	85	10	55	47	0	0	52	1.00
8355564--8355615	20	2.7	19	82	11	70	53	3	1	40	1.30
8355567--8355622	20	2.8	20	78	2	69	53	3	1	41	1.29
8355907--8355973	20	3.6	19	77	15	61	52	4	2	40	1.37
8360317--8360372	28	2.0	28	92	0	94	23	10	17	48	1.79
8361987--8362062	14	5.1	15	82	7	84	21	1	27	50	1.57
8361994--8362062	29	2.3	30	87	2	95	18	1	28	50	1.56
8362067--8362123	8	7.3	7	77	16	51	28	1	21	49	1.59
8361999--8362123	15	8.1	15	77	13	69	24	1	26	48	1.61
8363463--8363501	20	2.0	20	84	0	51	7	23	0	69	1.14
8363542--8363568	3	9.0	3	100	0	54	33	0	0	66	0.92
8363710--8364546	110	7.6	109	83	3	937	37	18	21	22	1.94
8364099--8364142	22	2.0	22	90	0	70	29	15	25	29	1.96
8363710--8364546	220	3.8	220	84	2	1038	37	18	21	22	1.94
8363755--8364563	330	2.5	329	85	1	1084	38	18	21	22	1.94
8364319--8364362	22	2.0	22	86	8	63	36	20	18	25	1.95
8364589--8364657	23	3.0	23	89	0	75	28	21	23	26	1.99
8364320--8364897	288	2.0	285	84	2	753	36	18	21	23	1.95
8364618--8364835	110	2.0	111	85	4	298	38	16	21	23	1.93
8370277--8370301	13	1.9	13	100	0	50	76	0	8	16	1.02
8371532--8371585	24	2.2	23	81	18	65	25	5	3	64	1.32
8371636--8371661	3	8.7	3	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8372095--8372139	24	1.9	23	81	4	54	20	6	22	51	1.70
8372232--8372274	20	2.2	20	95	0	77	34	32	25	6	1.83
8372293--8372337	20	2.2	20	84	0	54	33	28	22	15	1.95
8372692--8372732	14	2.9	14	96	0	73	14	0	7	78	0.96
8372672--8372716	20	2.2	20	100	0	90	8	0	4	86	0.69
8372672--8372742	34	2.1	33	86	2	97	12	1	7	78	1.00
8372764--8373381	156	3.9	156	95	2	1046	29	14	17	38	1.90
8374372--8374525	16	10.5	15	71	17	110	16	0	35	47	1.51
8374431--8374538	30	3.5	31	85	3	146	16	1	34	47	1.58
8374431--8374529	16	6.4	15	81	10	119	15	1	36	47	1.52
8375578--8375613	14	2.6	14	95	0	63	5	5	13	75	1.17
8375944--8375976	3	11.0	3	100	0	66	33	0	0	66	0.92
8379342--8379402	29	2.1	29	82	8	72	39	4	13	42	1.65
8381380--8381445	33	2.0	33	88	5	98	19	19	10	50	1.77
8382269--8382309	21	2.0	21	95	0	73	48	19	0	31	1.49
8391058--8391113	13	4.2	13	80	8	67	53	26	0	19	1.45
8390998--8391193	29	6.6	30	72	15	106	51	26	0	21	1.48
8391058--8391120	13	4.8	12	78	16	54	52	28	0	19	1.46
8391065--8391155	21	4.4	20	71	14	60	52	29	0	17	1.45
8391177--8391274	14	6.8	14	77	6	88	57	24	2	16	1.50
8391204--8391281	8	10.4	8	68	18	51	53	28	2	15	1.55
8391177--8391274	30	3.4	29	83	4	99	57	24	2	16	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8391195--8391283	29	3.0	29	86	1	106	52	29	2	15	1.55
8395054--8395085	7	4.6	7	96	0	55	0	0	21	78	0.76
8395054--8395086	15	2.3	15	89	5	50	0	0	21	78	0.75
8398408--8398440	13	2.6	13	85	4	50	57	0	3	39	1.14
8398784--8398856	20	3.8	19	74	18	64	49	5	4	41	1.45
8403459--8403514	28	2.0	28	92	0	94	23	10	17	48	1.79
8405015--8405058	17	2.6	17	100	0	88	22	4	36	36	1.75
8405080--8405152	37	2.0	35	84	5	92	16	0	34	49	1.46
8405092--8405122	16	1.9	16	93	0	53	19	0	35	45	1.51
8405130--8405265	16	8.9	15	74	15	109	18	1	30	50	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138