genome.fa.s124.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  73  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13596229--13596280	26	2.0	25	88	3	77	28	25	19	26	1.98
13603041--13603183	73	2.0	73	85	2	198	20	27	38	13	1.90
13604152--13604961	315	2.6	313	83	3	986	20	28	29	22	1.98
13604937--13604987	26	2.0	26	88	7	77	27	27	13	31	1.94
13605158--13605659	158	3.2	156	78	4	551	19	28	29	22	1.98
13606024--13606074	26	2.0	26	84	0	66	33	25	15	25	1.95
13606133--13606548	159	2.6	159	77	6	383	18	25	29	26	1.98
13605105--13607408	868	2.6	870	84	4	2926	20	26	28	24	1.99
13607156--13607718	157	3.6	158	74	7	500	17	25	30	25	1.97
13606987--13607726	314	2.3	316	83	2	887	17	25	30	25	1.98
13607702--13607753	26	2.0	26	84	0	68	28	21	19	30	1.97
13608425--13608477	26	2.0	26	88	0	79	26	24	20	28	1.99
13608794--13608845	26	2.0	26	92	0	86	28	28	17	25	1.97
13608826--13609192	159	2.3	158	75	5	353	20	26	30	22	1.98
13608819--13609320	158	3.2	157	73	7	449	20	26	29	23	1.98
13609846--13609898	26	2.0	26	89	7	81	28	22	18	30	1.98
13610606--13611145	159	3.4	158	79	5	511	21	26	29	22	1.99
13611263--13611315	26	2.0	26	92	0	88	28	28	16	26	1.97
13611539--13611591	26	2.0	26	89	7	81	26	20	20	32	1.98
13612092--13612144	26	2.0	26	88	0	79	28	26	18	26	1.98
13611698--13612450	344	2.2	342	86	2	1017	20	27	28	23	1.99
13613328--13613380	26	2.0	26	85	7	72	32	28	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13613672--13613724	26	2.0	26	89	7	81	28	24	18	28	1.98
13614342--13614728	158	2.4	159	78	3	359	18	28	29	23	1.97
13615473--13615848	196	1.9	196	84	3	497	21	26	28	23	1.99
13615930--13616291	158	2.3	158	78	5	354	18	25	30	25	1.98
13615132--13616475	697	1.9	698	84	2	1770	19	27	30	22	1.98
13617785--13617837	26	2.0	26	89	7	81	26	20	20	32	1.98
13618049--13618336	158	1.8	159	82	3	375	20	26	29	23	1.99
13618518--13618570	26	2.0	26	88	0	79	24	30	22	22	1.99
13618886--13618938	26	2.0	26	88	0	79	28	26	18	26	1.98
13619389--13619438	26	1.9	26	92	8	84	30	24	16	30	1.96
13619582--13619634	26	2.0	26	92	0	88	30	26	18	24	1.98
13619648--13619892	134	1.8	133	83	4	323	16	27	32	22	1.96
13619900--13619952	26	2.0	26	89	7	81	28	24	18	28	1.98
13620625--13620675	26	2.0	26	88	0	75	29	23	19	27	1.98
13620966--13621018	26	2.0	26	85	7	72	28	22	18	30	1.98
13621705--13621755	26	2.0	26	88	0	75	29	23	19	27	1.98
13622046--13622098	26	2.0	26	85	7	72	28	22	18	30	1.98
13622783--13622835	26	2.0	26	92	0	88	30	26	16	26	1.97
13622849--13623315	159	2.9	158	76	7	428	18	27	31	22	1.97
13622809--13623302	158	3.1	156	75	6	528	19	26	30	23	1.98
13623404--13623429	13	2.0	13	100	0	52	7	53	23	15	1.67
13623468--13623520	26	2.0	26	92	0	88	28	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13623501--13623915	159	2.6	158	76	4	386	19	26	32	21	1.97
13625033--13625444	158	2.6	158	74	7	404	19	27	29	23	1.98
13625556--13625607	25	2.0	26	89	10	81	26	26	19	26	1.99
13625582--13626083	159	3.2	158	76	6	489	19	26	30	23	1.98
13626057--13626108	26	2.0	26	85	7	70	26	25	19	28	1.98
13626790--13626842	26	2.0	26	92	0	88	26	26	20	26	1.99
13627292--13627342	26	2.0	26	84	0	66	31	23	13	31	1.93
13628147--13628199	26	2.0	26	85	7	72	26	22	20	30	1.98
13628869--13628921	26	2.0	26	85	7	72	32	28	18	20	1.97
13629211--13629263	26	2.0	26	85	7	72	26	24	18	30	1.98
13631036--13631088	27	2.0	27	88	7	81	30	18	37	13	1.89
13635525--13636030	159	3.2	158	76	3	523	20	27	29	22	1.98
13636134--13636186	26	2.0	26	88	0	79	30	24	18	26	1.98
13637094--13637600	158	3.2	159	74	7	488	20	28	30	21	1.98
13637707--13637759	26	2.0	26	85	7	72	26	26	20	26	1.99
13638208--13638260	26	2.0	26	92	7	90	26	24	20	28	1.99
13638354--13638380	13	2.1	13	100	0	54	0	48	29	22	1.51
13637787--13639052	684	1.8	685	81	3	1546	19	26	29	23	1.98
13638893--13638945	26	2.0	26	96	0	97	32	24	13	30	1.93
13639430--13639482	26	2.0	26	89	7	81	26	22	20	30	1.98
13639796--13639848	26	2.0	26	92	0	88	28	26	20	24	1.99
13639829--13640485	159	4.1	160	77	5	555	19	27	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13640784--13640836	26	2.0	26	92	0	88	26	26	20	26	1.99
13640937--13641312	158	2.4	159	78	3	398	20	27	28	23	1.99
13643063--13643115	26	2.0	26	85	7	72	30	26	16	26	1.97
13643174--13643592	158	2.6	159	79	6	440	19	27	28	24	1.99
13643406--13643776	185	2.0	184	84	4	480	22	26	28	22	1.99
13643850--13643902	26	2.0	26	82	7	63	30	26	15	28	1.96
13644217--13644269	26	2.0	26	92	0	88	26	28	22	22	1.99
13644694--13644746	26	2.0	26	85	0	70	30	30	16	22	1.96
13644784--13645222	158	2.8	158	78	6	444	19	27	30	23	1.98
13645194--13645246	26	2.0	26	92	7	90	26	20	20	32	1.98
13645919--13645971	26	2.0	26	92	0	88	26	30	20	22	1.98
13646102--13646154	26	2.0	26	89	7	81	26	20	20	32	1.98
13646123--13646918	415	1.9	405	86	6	1111	23	23	23	29	1.99
13647227--13647726	158	3.2	157	75	5	407	20	26	29	23	1.99
13648627--13648679	26	2.0	26	85	7	72	26	22	18	32	1.97
13649335--13649387	26	2.0	26	92	0	88	28	28	18	24	1.98
13649403--13649700	157	1.9	156	83	0	380	14	25	34	25	1.94
13649675--13649727	26	2.0	26	85	7	72	26	20	20	32	1.98
13649701--13650192	158	3.1	158	75	8	354	20	27	28	23	1.99
13650651--13650708	26	2.2	26	81	9	64	63	10	3	22	1.40
13650859--13651857	514	1.9	514	82	2	1229	20	26	29	24	1.99
13651920--13651975	26	2.2	26	90	6	87	28	25	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13652868--13652920	26	2.0	26	92	0	88	28	28	18	24	1.98
13652957--13653391	158	2.8	156	81	5	489	17	27	31	23	1.97
13653366--13653418	26	2.0	26	92	7	90	26	24	20	28	1.99
13654077--13654129	26	2.0	26	86	13	74	30	26	16	26	1.97
13654103--13654603	157	3.2	158	72	8	455	18	24	31	25	1.98
13654577--13654629	26	2.0	26	85	7	72	28	24	16	30	1.97
13654774--13654826	26	2.0	26	86	13	74	28	26	16	28	1.97
13654481--13654847	197	1.9	197	86	2	522	19	26	29	24	1.98
13655276--13655328	26	2.0	26	92	7	90	26	24	20	28	1.99
13655643--13655695	26	2.0	26	92	0	88	28	28	18	24	1.98
13656144--13656196	26	2.0	26	85	7	72	32	20	16	30	1.95
13662787--13662839	26	2.0	26	92	0	88	32	28	16	22	1.96
13663287--13663339	26	2.0	26	85	7	72	28	22	18	30	1.98
13663666--13663718	26	2.0	26	85	0	70	30	26	16	26	1.97
13664890--13664942	26	2.0	26	89	7	81	26	22	20	30	1.98
13665158--13665756	317	1.9	317	80	4	715	19	26	30	24	1.98
13665731--13665781	26	2.0	26	84	7	68	29	23	17	29	1.97
13665619--13666686	355	3.0	352	80	4	1111	20	27	30	22	1.98
13666953--13667005	26	2.0	26	85	7	72	28	22	18	30	1.98
13667380--13667432	26	2.0	26	89	7	81	26	22	20	30	1.98
13667568--13667618	26	2.0	26	88	7	77	23	21	19	35	1.96
13667956--13668008	26	2.0	26	92	0	88	28	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13668463--13668512	26	1.9	26	92	8	84	24	22	20	34	1.97
13667472--13669383	873	2.2	880	81	5	2184	20	26	28	24	1.99
13668856--13669355	159	3.2	157	77	6	485	20	26	28	24	1.99
13669332--13669381	26	1.9	26	92	8	84	24	20	22	34	1.97
13670048--13670101	26	2.1	26	92	0	90	25	27	20	25	1.99
13670165--13670580	158	2.6	157	75	7	385	18	26	29	25	1.98
13670553--13670604	26	2.0	26	88	7	79	26	23	19	30	1.98
13670931--13670983	26	2.0	26	92	0	88	28	28	18	24	1.98
13677428--13678551	315	3.6	314	86	3	1494	19	28	30	21	1.98
13678725--13678775	26	2.0	26	88	0	75	29	25	17	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138