genome.fa.s124.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  64  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12870057--12870423	157	2.3	157	81	1	421	18	28	29	22	1.98
12870396--12870448	26	2.0	26	88	0	79	28	24	22	24	2.00
12870580--12870632	26	2.0	26	89	7	81	28	22	18	30	1.98
12871806--12871858	26	2.0	26	85	7	72	30	18	18	32	1.96
12872099--12872123	13	1.9	13	100	0	50	12	48	16	24	1.79
12872163--12872215	26	2.0	26	92	0	88	26	26	20	26	1.99
12871756--12872720	368	2.7	357	79	8	856	20	27	28	23	1.99
12871894--12872732	368	2.4	356	80	7	875	20	28	29	22	1.98
12872054--12872732	368	1.8	368	84	2	925	20	28	28	22	1.98
12872531--12872583	26	2.0	26	88	0	79	30	26	18	24	1.98
12873423--12873475	26	2.0	26	89	7	81	26	24	20	28	1.99
12873576--12873951	159	2.4	159	80	6	422	17	26	31	24	1.97
12874657--12874709	26	2.0	26	88	0	79	32	26	15	26	1.95
12875008--12875366	196	1.8	197	81	6	451	23	25	26	23	2.00
12875812--12875864	26	2.0	26	89	7	81	26	24	18	30	1.98
12876684--12877060	158	2.4	159	79	5	420	19	28	29	23	1.98
12876627--12877060	159	2.7	158	77	4	469	18	28	29	23	1.98
12877032--12877084	26	2.0	26	89	7	81	28	24	18	28	1.98
12876973--12877944	342	2.9	334	78	8	1019	20	26	28	24	1.99
12877376--12877426	26	2.0	26	92	0	84	29	27	17	25	1.98
12876973--12877944	332	2.9	330	80	5	920	20	26	28	24	1.99
12878208--12878260	26	2.0	26	92	7	90	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12878948--12879000	26	2.0	26	85	7	72	30	24	18	26	1.98
12879114--12879514	158	2.5	157	79	5	432	19	24	30	24	1.98
12879631--12879686	26	2.2	26	90	6	87	28	23	17	30	1.97
12886154--12886646	159	3.1	156	76	6	483	20	26	29	24	1.99
12886620--12886671	26	2.0	26	96	0	95	28	23	17	30	1.97
12886984--12887039	26	2.2	26	90	0	85	30	28	17	23	1.97
12887013--12887534	158	3.3	157	76	4	512	18	27	30	23	1.98
12887658--12887707	26	1.9	26	91	0	82	26	28	20	26	1.99
12888594--12888671	26	3.0	26	94	0	129	28	28	17	25	1.98
12889500--12889552	26	2.0	26	92	0	88	28	28	18	24	1.98
12890003--12890055	26	2.0	26	89	7	81	26	22	20	30	1.98
12891546--12891834	158	1.8	158	84	1	400	19	25	29	25	1.98
12892037--12892329	159	1.8	158	84	6	396	18	27	29	24	1.98
12892302--12892354	26	2.0	26	89	7	81	28	20	18	32	1.97
12893203--12893253	26	2.0	26	100	0	102	25	27	19	27	1.99
12893229--12894685	159	9.2	159	74	5	857	20	27	29	23	1.99
12894157--12894525	158	2.3	159	84	3	422	20	27	29	23	1.99
12895747--12895799	26	2.0	26	92	0	88	30	26	16	26	1.97
12895773--12896114	159	2.2	158	78	4	366	21	26	28	22	1.99
12896248--12896300	26	2.0	26	85	7	72	26	22	20	30	1.98
12897971--12898023	26	2.0	26	88	0	79	28	28	16	26	1.97
12898031--12898340	159	2.0	158	81	3	363	18	27	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12897997--12898486	158	3.1	158	76	3	410	19	26	28	24	1.99
12898865--12898917	26	2.0	26	92	7	90	30	18	20	30	1.97
12898643--12899260	184	3.4	182	77	5	532	21	24	28	26	1.99
12899959--12900008	26	1.9	26	92	8	84	28	24	16	32	1.96
12900337--12900389	26	2.0	26	89	7	81	28	26	18	26	1.98
12900363--12900864	158	3.2	158	71	10	407	21	26	28	23	1.99
12900838--12900890	26	2.0	26	89	7	81	28	24	18	28	1.98
12901047--12901099	26	2.0	26	92	7	90	30	24	16	28	1.97
12902369--12902421	26	2.0	26	89	7	81	26	24	20	28	1.99
12902435--12902739	159	1.9	158	86	0	430	17	27	33	22	1.96
12901917--12902743	440	1.9	441	85	1	1140	19	27	30	22	1.98
12902712--12902763	26	2.0	25	96	3	95	26	23	21	28	1.99
12903344--12903396	26	2.0	26	92	0	88	26	26	20	26	1.99
12904811--12905187	159	2.4	160	79	4	440	19	26	29	23	1.98
12905159--12905211	26	2.0	26	89	7	81	28	24	18	28	1.98
12905539--12905591	26	2.0	26	92	7	90	26	24	20	28	1.99
12906259--12906308	26	1.9	26	88	8	75	26	28	18	28	1.98
12906379--12906824	158	2.8	157	76	6	445	18	27	29	23	1.98
12906942--12906994	26	2.0	26	92	0	88	24	28	22	24	2.00
12907416--12907468	26	2.0	26	89	7	81	26	26	20	26	1.99
12914022--12914074	26	2.0	26	92	0	88	26	26	20	26	1.99
12914048--12914549	158	3.2	158	75	7	480	19	27	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12914523--12914575	26	2.0	26	89	7	81	28	24	18	28	1.98
12914420--12914942	196	2.7	196	90	0	805	21	27	28	23	1.99
12914719--12914771	26	2.0	26	89	7	81	30	22	16	30	1.96
12915164--12915766	159	3.8	158	80	7	553	17	28	30	23	1.97
12915748--12915800	26	2.0	26	85	7	72	28	24	18	28	1.98
12916472--12916524	26	2.0	26	88	0	79	28	30	16	24	1.97
12916498--12916990	158	3.1	158	74	6	368	17	27	31	23	1.97
12916970--12917075	52	2.0	51	87	7	151	27	25	19	27	1.99
12916973--12917077	26	4.0	26	82	4	124	27	25	20	26	1.99
12917051--12917552	158	3.2	157	80	4	535	19	26	30	23	1.98
12917051--12917552	159	3.2	157	80	4	528	19	26	30	23	1.98
12916469--12917578	553	2.0	553	86	2	1548	19	26	29	23	1.98
12918248--12918300	26	2.0	26	92	0	88	28	28	18	24	1.98
12918274--12918763	158	3.1	157	74	5	459	18	27	29	23	1.98
12918740--12918791	26	2.0	26	88	3	77	25	23	23	28	1.99
12918828--12918878	26	2.0	26	92	0	84	31	29	17	21	1.96
12919436--12919489	9	5.5	10	85	14	53	29	0	7	62	1.22
12919441--12919576	16	8.6	16	68	24	60	27	0	5	66	1.18
12920170--12920207	20	1.9	20	88	0	58	26	23	15	34	1.95
12920542--12920593	8	6.9	8	78	12	65	23	0	1	75	0.91
12920619--12920682	28	2.3	27	84	12	78	12	4	1	81	0.92
12920630--12920687	11	5.3	10	77	20	55	12	3	1	82	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12920617--12920705	40	2.3	39	81	9	101	13	5	2	78	1.02
12920622--12920687	17	3.9	17	81	0	78	12	4	1	81	0.90
12920622--12920693	6	12.3	6	75	10	60	12	4	2	80	0.96
12920732--12920881	57	2.7	56	91	8	243	44	6	12	37	1.68
12926008--12926178	41	4.1	41	92	6	274	22	18	25	33	1.96
12926185--12926227	1	43.0	1	80	0	50	90	9	0	0	0.45
12926185--12926227	8	5.4	8	86	8	61	90	9	0	0	0.45
12926185--12926225	15	2.8	14	89	10	64	90	9	0	0	0.46
12926185--12926227	17	2.7	17	89	10	65	90	9	0	0	0.45
12926412--12926465	9	5.5	10	85	14	53	29	0	7	62	1.22
12926417--12926571	56	2.8	56	77	7	149	30	0	4	64	1.18
12926469--12926494	4	6.5	4	100	0	52	23	0	0	76	0.78
12927439--12927472	9	3.4	10	88	12	52	29	0	0	70	0.87
12927528--12927575	11	4.5	10	87	7	51	12	4	2	81	0.93
12927528--12927596	17	4.1	17	75	14	70	13	2	1	82	0.85
12927535--12927596	11	5.5	11	79	11	72	12	1	1	83	0.79
12927539--12927611	17	4.3	17	82	6	69	13	4	1	80	0.92
12927528--12927606	6	13.5	6	76	14	76	13	3	1	81	0.90
12927634--12928199	57	9.7	57	86	7	800	44	7	13	34	1.72
12927614--12928199	119	5.0	116	87	6	837	45	7	13	34	1.71
12927634--12928199	176	3.2	176	96	1	1043	44	7	13	34	1.72
12929379--12929428	26	1.9	26	91	0	82	24	26	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12929894--12929946	26	2.0	26	89	7	81	26	22	22	28	1.99
12929724--12930117	196	2.0	196	88	1	583	22	28	26	22	1.99
12929920--12930307	171	2.3	169	75	9	385	21	26	28	23	1.99
12930234--12930763	159	3.3	158	76	6	417	19	26	29	24	1.98
12930737--12930789	26	2.0	26	92	7	90	26	24	20	28	1.99
12931471--12931521	26	2.0	26	96	0	93	29	21	17	31	1.96
12931497--12931995	157	3.2	157	76	6	456	18	25	30	25	1.98
12931969--12932021	26	2.0	26	85	7	72	30	22	18	28	1.98
12931995--12932394	171	2.3	170	79	7	461	21	27	29	21	1.99
12932272--12932839	158	3.6	159	75	4	391	20	27	27	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138