genome.fa.s124.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  123  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17566520--17566572	26	2.0	26	96	0	97	24	20	28	26	1.99
17565956--17567003	368	2.8	365	79	7	1047	23	29	26	20	1.99
17566900--17566952	26	2.0	26	85	7	72	32	18	20	28	1.97
17566926--17567291	156	2.3	156	83	4	434	25	30	24	19	1.98
17567581--17567633	26	2.0	26	89	7	81	30	20	22	26	1.98
17567410--17567918	196	2.6	196	82	2	574	25	29	25	19	1.99
17567814--17568249	159	2.8	158	79	3	430	24	33	25	16	1.96
17569123--17569174	26	2.0	25	85	3	68	26	19	25	28	1.98
17569844--17569896	26	2.0	26	89	7	81	32	20	20	26	1.98
17570029--17570079	26	2.0	26	84	0	66	27	13	25	33	1.94
17570857--17570909	26	2.0	26	92	0	88	30	20	22	26	1.98
17571576--17571628	26	2.0	26	92	7	90	28	20	24	26	1.99
17571601--17572103	158	3.2	158	79	5	503	23	30	27	19	1.98
17572235--17572276	12	3.5	12	87	6	50	7	42	26	23	1.80
17572299--17572667	184	2.0	184	80	2	409	25	28	24	21	1.99
17572952--17573009	25	2.3	26	86	13	79	24	15	27	32	1.95
17573070--17573116	24	2.0	24	91	0	76	10	36	25	27	1.89
17574508--17574560	26	2.0	26	92	7	90	28	16	24	30	1.97
17574506--17574859	196	1.8	196	84	1	485	23	27	27	22	1.99
17576942--17576994	26	2.0	26	88	0	79	22	18	30	28	1.98
17577664--17577716	26	2.0	26	89	7	81	28	18	24	28	1.98
17578006--17578058	26	2.0	26	81	0	61	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17578457--17578509	26	2.0	26	89	7	81	32	20	20	26	1.98
17578299--17578659	183	2.0	184	87	2	530	24	28	26	21	1.99
17579521--17579573	26	2.0	26	89	7	81	32	20	20	26	1.98
17579325--17579724	184	2.2	184	85	0	532	24	29	25	21	1.99
17579547--17580045	158	3.2	157	75	6	481	22	29	27	20	1.99
17580343--17580377	9	4.1	9	85	14	56	28	22	0	48	1.51
17581082--17581134	26	2.0	26	88	0	79	22	18	30	28	1.98
17580923--17581488	184	3.0	184	79	10	637	21	28	28	21	1.99
17581060--17581440	196	1.9	196	85	5	529	20	28	29	21	1.98
17581303--17581684	158	2.4	158	78	3	410	23	29	27	19	1.98
17581303--17581754	159	2.9	156	76	6	430	22	28	27	20	1.99
17581779--17581831	26	2.0	26	89	7	81	24	24	28	22	2.00
17583009--17583061	26	2.0	26	85	0	70	26	18	26	28	1.98
17583733--17583785	26	2.0	26	85	7	72	30	20	20	28	1.98
17583759--17584261	159	3.2	157	79	5	537	23	31	25	19	1.98
17584235--17584287	26	2.0	26	89	7	81	28	20	24	26	1.99
17591295--17591347	26	2.0	26	92	0	88	26	20	26	26	1.99
17591675--17591727	26	2.0	26	92	7	90	28	20	24	26	1.99
17591798--17592492	317	2.2	316	79	3	727	23	29	25	21	1.99
17592466--17592518	26	2.0	26	92	0	88	26	20	26	26	1.99
17593359--17593411	26	2.0	26	92	0	88	26	20	26	26	1.99
17593934--17593986	26	2.0	26	89	7	81	30	20	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17593567--17594068	196	2.6	196	80	3	553	24	28	25	21	1.99
17594435--17594487	26	2.0	26	96	0	97	24	20	28	26	1.99
17594644--17595090	159	2.8	158	80	4	420	23	31	26	17	1.97
17595100--17595155	26	2.2	26	96	0	103	25	19	26	28	1.99
17595823--17595874	26	2.0	26	92	7	88	26	19	26	26	1.99
17597025--17597077	26	2.0	26	89	7	81	28	18	24	28	1.98
17597050--17597549	157	3.2	157	77	7	474	22	29	27	20	1.99
17597821--17597873	26	2.0	26	85	7	72	24	15	28	32	1.95
17597340--17597893	298	1.9	297	85	3	765	25	28	25	21	1.99
17598893--17599287	158	2.5	158	81	4	449	25	30	26	17	1.97
17598956--17599326	158	2.4	157	83	4	426	23	32	26	18	1.97
17599364--17599413	25	1.9	26	84	8	66	30	10	28	32	1.89
17599724--17599775	26	2.0	25	85	10	70	28	17	25	28	1.97
17599748--17600186	158	2.8	158	79	5	458	23	31	27	17	1.97
17600225--17600276	26	2.0	26	84	0	68	28	17	25	28	1.97
17607362--17607414	26	2.0	26	85	7	72	28	20	26	24	1.99
17607540--17608126	296	2.0	295	83	3	743	24	28	26	19	1.99
17607839--17608267	158	2.7	157	74	4	394	24	27	26	20	1.99
17609618--17609672	26	2.1	26	83	6	67	27	18	23	30	1.97
17609717--17610142	158	2.7	158	74	7	362	22	30	28	19	1.98
17612276--17612328	26	2.0	26	88	0	79	28	18	22	30	1.98
17611774--17612701	343	2.7	340	81	4	974	24	26	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17612619--17612671	26	2.0	26	85	0	70	26	16	26	30	1.97
17613352--17613402	26	1.9	26	88	4	75	37	23	17	21	1.94
17613552--17613604	26	2.0	26	85	7	72	30	18	22	28	1.98
17613339--17613864	210	2.5	211	89	2	788	26	28	24	19	1.99
17614463--17614515	26	2.0	26	89	7	81	30	20	22	26	1.98
17614488--17614991	159	3.2	158	77	5	437	24	30	26	18	1.98
17614964--17615016	26	2.0	26	89	7	81	26	20	26	26	1.99
17615831--17615886	26	2.2	26	87	6	78	28	17	23	30	1.97
17615869--17616191	171	1.9	170	79	4	364	22	29	25	22	1.99
17614461--17616755	867	2.7	853	79	7	2313	24	28	26	21	1.99
17616675--17616727	26	2.0	26	92	0	88	24	20	26	28	1.99
17617332--17617383	26	2.0	26	85	7	70	30	17	23	28	1.97
17617657--17617709	26	2.0	26	89	7	81	28	20	24	26	1.99
17618001--17618051	26	2.0	26	92	7	86	27	19	27	25	1.99
17619203--17619255	26	2.0	26	89	7	81	30	20	22	26	1.98
17619228--17619728	158	3.2	156	78	4	477	23	30	27	18	1.98
17620471--17620524	26	2.0	27	92	3	92	27	22	24	25	2.00
17620497--17620990	158	3.1	158	76	8	421	24	29	26	19	1.99
17621680--17621732	26	2.0	26	96	0	97	24	16	28	30	1.97
17622378--17622430	26	2.0	26	96	0	97	30	20	24	24	1.99
17623038--17623090	26	2.0	26	92	0	88	22	20	30	26	1.98
17623746--17623797	25	2.0	26	85	10	72	26	21	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17623771--17624105	171	2.0	170	81	6	392	22	28	26	22	1.99
17624113--17624165	26	2.0	26	85	7	72	28	18	24	28	1.98
17624142--17624438	158	1.9	158	79	0	342	24	28	27	18	1.98
17626450--17626502	26	2.0	26	92	7	90	28	20	24	26	1.99
17626279--17626911	196	3.3	196	81	5	645	24	27	25	22	2.00
17626646--17626698	26	2.0	26	82	13	65	28	20	24	26	1.99
17628870--17628922	26	2.0	26	92	7	90	33	20	18	26	1.96
17632062--17632113	26	2.0	26	92	7	88	28	19	25	26	1.98
17631889--17632409	193	2.7	196	81	4	536	25	27	24	22	2.00
17633680--17634149	158	3.0	157	74	3	431	24	30	26	18	1.98
17634476--17634528	26	2.0	26	92	7	90	33	20	18	26	1.96
17635722--17636561	159	5.3	158	73	7	551	22	29	28	19	1.98
17635734--17636725	475	2.1	475	80	4	1135	22	28	27	20	1.99
17637339--17637388	26	1.9	26	91	0	82	30	20	26	24	1.98
17637711--17638005	159	1.9	158	81	2	367	23	31	26	18	1.98
17638019--17638070	26	2.0	25	85	3	68	25	17	28	28	1.97
17638240--17638619	156	2.4	156	76	4	379	25	28	25	20	1.99
17638621--17638646	13	2.0	13	100	0	52	23	23	46	7	1.78
17638739--17638791	26	2.0	26	85	7	72	30	22	22	24	1.99
17639317--17639806	158	3.1	158	77	3	392	26	30	23	19	1.98
17639781--17639832	26	2.0	26	92	0	86	26	19	26	26	1.99
17640304--17640355	25	2.0	26	92	3	88	25	19	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17640146--17640588	183	2.4	183	86	4	606	24	27	27	20	1.99
17640578--17640602	13	1.9	13	100	0	50	24	16	48	12	1.79
17640867--17640919	26	2.0	26	89	7	81	32	16	20	30	1.95
17641368--17641420	26	2.0	26	88	0	79	28	20	24	26	1.99
17640330--17642168	882	2.1	880	83	3	2295	24	28	26	21	1.99
17642275--17642327	26	2.0	26	89	7	81	30	18	24	26	1.98
17642744--17642796	26	2.0	26	88	0	79	26	18	26	28	1.98
17642954--17643320	170	2.2	170	81	7	408	23	27	25	23	2.00
17643294--17643346	26	2.0	26	92	7	90	30	20	22	26	1.98
17643290--17644563	696	1.8	697	82	3	1659	25	26	25	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138