genome.fa.s124.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  30  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7219562--7220650	235	4.7	230	86	4	1383	37	25	11	25	1.90
7230549--7230937	193	2.0	194	91	4	642	38	14	10	36	1.81
7230986--7231021	11	3.2	11	92	4	54	22	0	2	75	0.94
7230982--7231033	21	2.3	23	74	6	54	34	0	1	63	1.06
7232613--7232649	13	2.9	13	96	4	67	86	0	13	0	0.57
7232631--7232656	10	2.6	10	100	0	52	92	0	7	0	0.39
7232617--7232656	12	3.4	12	89	3	64	90	0	10	0	0.47
7232616--7232649	14	2.5	13	95	4	59	91	0	8	0	0.43
7232880--7232904	13	1.9	13	100	0	50	52	32	8	8	1.60
7235780--7235845	14	4.6	14	72	7	53	56	0	0	43	0.99
7235796--7235866	37	1.9	36	86	8	99	54	1	0	43	1.08
7236127--7236175	24	2.1	22	85	7	62	42	6	0	51	1.27
7241229--7241261	15	2.3	15	89	5	50	63	3	3	30	1.24
7242426--7242511	30	3.0	30	85	8	99	43	2	13	40	1.57
7242434--7242527	30	3.2	30	81	11	81	43	1	11	43	1.48
7242474--7242534	28	2.2	28	79	5	70	52	0	8	39	1.31
7268960--7269021	2	31.5	2	86	3	63	41	0	3	54	1.16
7270345--7270420	16	5.1	16	72	15	65	43	0	2	53	1.14
7270324--7270368	22	2.0	22	83	8	56	48	0	2	48	1.13
7271122--7271164	22	2.0	22	85	0	59	48	0	0	51	1.00
7272176--7272204	14	2.0	15	93	6	51	27	0	10	62	1.28
7273043--7273084	21	2.0	21	95	4	77	64	0	4	30	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7273290--7273340	2	25.5	2	87	0	57	1	39	0	58	1.09
7273289--7273340	14	3.7	14	86	0	68	1	38	0	59	1.08
7275761--7275904	18	8.1	17	72	24	77	56	2	0	40	1.11
7275764--7275915	15	9.6	15	70	20	87	57	2	0	40	1.13
7275769--7275910	45	3.0	44	75	17	135	57	2	0	40	1.14
7275882--7275930	20	2.4	21	80	6	57	65	2	2	30	1.15
7276002--7276042	16	2.7	15	85	7	55	48	2	0	48	1.14
7276012--7276077	26	2.6	26	83	9	91	50	3	0	46	1.16
7276152--7276204	26	2.0	26	82	7	63	54	3	0	41	1.18
7276369--7276404	2	18.0	2	100	0	72	0	50	0	50	1.00
7276404--7276433	2	15.0	2	100	0	60	50	0	0	50	1.00
7277424--7277456	11	3.1	11	91	4	50	45	3	0	51	1.16
7277533--7277573	20	2.0	20	85	0	55	21	7	14	56	1.63
7277564--7277597	14	2.3	15	95	5	61	29	0	5	64	1.17
7277560--7277601	15	2.7	16	85	14	61	26	0	7	66	1.17
7277863--7277922	21	2.8	22	82	7	79	25	1	11	61	1.39
7277893--7277949	25	2.3	25	79	14	64	24	1	14	59	1.44
7278546--7278622	29	2.7	29	79	13	81	49	2	3	44	1.34
7286070--7286113	17	2.7	16	82	6	61	47	0	0	52	1.00
7287201--7287246	19	2.5	19	82	3	58	67	0	4	28	1.10
7287238--7287283	17	2.6	17	79	3	56	56	0	6	36	1.25
7287258--7287303	14	3.4	14	72	22	53	65	0	4	30	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7287607--7287670	30	2.2	29	83	5	76	31	15	21	31	1.95
7287614--7287671	30	2.0	29	89	3	89	29	15	22	32	1.95
7291609--7293508	634	3.0	634	98	0	3642	24	13	18	43	1.87
7294419--7294443	4	6.2	4	100	0	50	24	0	0	76	0.80
7296034--7296061	8	3.5	8	100	0	56	64	0	0	35	0.94
7296098--7296129	14	2.3	14	94	0	55	28	3	0	68	1.04
7299182--7299206	2	12.5	2	100	0	50	0	48	0	52	1.00
7299244--7299278	2	17.5	2	100	0	70	0	0	48	51	1.00
7300710--7300743	16	2.1	16	88	0	50	0	0	55	44	0.99
7300870--7300908	13	2.9	13	88	3	60	0	20	0	79	0.73
7307568--7307606	20	2.0	20	90	10	62	53	0	2	43	1.14
7320011--7320048	18	2.1	18	95	0	67	26	2	36	34	1.71
7323044--7323092	24	2.0	25	84	4	64	44	0	0	55	0.99
7325898--7325946	17	2.7	18	84	9	55	53	2	38	6	1.38
7327208--7327235	2	14.0	2	100	0	56	0	50	0	50	1.00
7328136--7328170	13	2.8	12	83	8	52	54	0	0	45	0.99
7328190--7328275	29	2.8	29	74	16	84	30	0	1	68	0.97
7337732--7337779	24	2.0	24	84	8	62	41	2	0	56	1.11
7339012--7339063	26	2.0	26	100	0	104	23	19	11	46	1.82
7341180--7341226	23	2.0	23	91	0	76	34	17	27	21	1.95
7344559--7344610	22	2.4	23	78	18	58	34	5	0	59	1.21
7345445--7345654	112	1.9	112	89	4	325	40	11	6	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7345445--7345682	112	2.1	112	83	7	288	40	10	7	41	1.67
7346273--7346306	15	2.2	16	89	5	52	38	0	0	61	0.96
7346358--7346408	19	2.7	19	78	3	59	43	0	0	56	0.99
7346362--7346418	25	2.3	26	84	6	73	36	0	1	61	1.07
7347970--7348106	76	1.8	73	85	11	190	27	2	7	62	1.33
7349167--7349509	59	5.7	59	88	6	462	44	8	13	33	1.73
7349168--7349509	120	2.9	118	89	6	487	44	8	13	33	1.73
7349149--7349509	179	2.0	182	88	6	538	45	8	12	32	1.72
7350543--7350687	49	3.0	48	81	5	159	33	9	15	41	1.80
7350673--7350994	92	3.5	92	80	3	335	34	10	12	41	1.78
7350670--7350994	138	2.4	136	79	4	373	35	10	12	41	1.78
7350672--7350983	46	6.8	45	77	4	291	34	10	12	41	1.78
7353848--7354101	136	1.9	136	95	1	465	39	12	16	30	1.87
7381045--7381266	71	3.1	71	90	4	311	34	15	4	44	1.68
7381045--7381266	36	6.1	36	77	10	175	34	15	4	44	1.68
7381250--7381597	47	7.2	48	76	7	223	25	14	5	54	1.63
7381245--7381596	145	2.4	142	78	10	363	25	14	5	54	1.62
7382294--7382318	12	2.1	12	100	0	50	44	24	0	32	1.54
7389924--7389948	1	25.0	1	100	0	50	0	0	0	100	0.00
7393501--7393581	41	2.0	41	90	0	126	35	17	7	39	1.78
7393853--7393878	2	13.0	2	100	0	52	50	0	0	50	1.00
7396961--7397000	19	2.0	21	85	9	57	47	2	2	47	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7397471--7397510	19	2.1	19	95	0	71	45	2	10	42	1.51
7406141--7406174	15	2.1	17	89	10	54	44	0	5	50	1.26
7407326--7407425	45	2.2	45	89	0	146	11	36	11	42	1.76
7412169--7412193	1	25.0	1	100	0	50	0	0	0	100	0.00
7413078--7413115	2	19.0	2	100	0	76	50	0	0	50	1.00
7413548--7413586	18	2.3	17	86	8	53	48	0	2	48	1.15
7414017--7414077	26	2.3	27	77	2	70	59	0	3	37	1.14
7414097--7414136	15	2.6	15	88	4	53	45	5	2	47	1.38
7415017--7415042	12	2.2	12	100	0	52	46	7	0	46	1.31
7415357--7415402	8	5.8	8	84	5	58	58	0	0	41	0.98
7415361--7415410	24	2.1	24	88	7	75	58	0	0	42	0.98
7415781--7415860	40	2.0	39	90	2	124	37	16	10	36	1.82
7416182--7416233	24	2.2	24	82	0	59	42	1	1	53	1.23
7416496--7416551	2	28.0	2	78	7	60	46	5	0	48	1.25
7418317--7418524	58	3.5	57	76	12	179	44	11	3	40	1.59
7418489--7418535	21	2.3	20	82	10	51	44	4	2	48	1.34
7419364--7419399	2	19.0	2	88	11	58	50	0	0	50	1.00
7422723--7422771	19	2.6	19	80	3	64	22	2	32	42	1.65
7422718--7422777	19	3.2	19	72	11	61	20	1	36	41	1.62
7423875--7423954	27	3.0	26	68	12	72	53	11	1	33	1.44
7423831--7424091	54	4.9	53	73	12	205	52	7	7	32	1.59
7424659--7424855	19	10.3	19	72	12	89	14	0	35	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7424650--7424733	40	2.1	40	84	0	105	16	0	35	47	1.47
7424819--7424866	19	2.5	19	86	0	60	16	0	33	50	1.46
7424705--7424898	38	5.1	38	72	12	121	14	0	34	50	1.47
7424832--7424943	37	3.0	38	81	7	104	21	2	28	47	1.64
7424672--7424923	114	2.2	115	84	5	321	15	0	34	49	1.50
7424896--7424943	18	2.6	18	80	6	51	22	6	25	45	1.75
7424974--7425146	20	8.7	19	67	14	91	20	7	29	42	1.79
7425010--7425145	39	3.4	40	76	9	107	19	7	30	42	1.78
7425185--7425270	20	4.2	20	73	16	70	20	4	29	45	1.71
7425185--7425270	41	2.1	40	85	8	120	20	4	29	45	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138