genome.fa.s124.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  26  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6587529--6587573	21	2.1	21	83	0	54	66	4	15	13	1.39
6588075--6588132	4	14.2	4	78	10	64	22	1	6	68	1.22
6588505--6588545	18	2.2	18	91	4	64	56	0	2	41	1.13
6589265--6589396	24	5.3	24	80	10	158	34	1	8	55	1.39
6589248--6589398	76	2.0	76	90	2	241	34	2	7	54	1.43
6589325--6589415	24	4.2	21	75	16	64	31	3	9	54	1.49
6589279--6589362	29	3.1	29	73	18	99	36	1	5	55	1.32
6589279--6589383	52	2.0	53	87	5	151	36	1	6	55	1.37
6589376--6589414	18	2.2	18	86	9	53	28	2	12	56	1.50
6589355--6589456	42	2.4	41	83	6	123	30	2	11	54	1.51
6589575--6589601	12	2.2	12	100	0	54	25	7	14	51	1.68
6589514--6589644	34	3.8	35	80	7	153	29	8	12	48	1.71
6589513--6589659	68	2.2	68	80	7	165	30	8	12	48	1.71
6590020--6590061	22	1.9	22	85	9	59	38	0	9	52	1.34
6591770--6591800	16	1.9	16	93	0	53	19	0	29	51	1.47
6591758--6591863	28	3.7	29	76	11	92	22	0	27	50	1.50
6591820--6591891	15	4.9	15	75	14	69	20	0	33	45	1.52
6591759--6591895	30	4.7	29	75	12	111	22	0	29	48	1.51
6591759--6591922	86	1.9	86	80	7	190	23	0	27	48	1.56
6592292--6592330	8	4.9	8	90	9	62	74	10	0	15	1.07
6599393--6599424	3	10.7	3	100	0	64	65	0	0	34	0.93
6600606--6600644	18	2.1	19	90	4	62	25	33	10	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6615767--6615794	7	4.0	7	100	0	56	14	0	0	85	0.59
6622687--6622740	24	2.2	23	81	18	65	25	5	3	64	1.32
6622791--6622816	3	8.7	3	100	0	52	30	0	0	69	0.89
6623396--6623439	20	2.2	20	95	0	79	38	31	25	4	1.76
6623746--6623787	14	3.1	15	80	19	56	7	42	21	28	1.79
6623746--6623782	13	2.7	14	80	20	51	8	43	24	24	1.81
6623837--6623886	17	2.9	17	87	0	64	8	0	4	88	0.64
6623834--6623867	1	34.0	1	100	0	68	0	0	0	100	0.00
6623917--6624364	156	2.9	152	92	4	758	30	13	17	37	1.89
6626500--6626601	32	3.4	31	74	19	99	39	13	17	29	1.88
6626299--6626828	59	8.9	57	73	9	298	39	16	16	27	1.90
6626985--6627172	83	2.2	84	75	6	186	37	18	10	34	1.85
6627310--6627417	46	2.3	46	80	12	132	32	13	11	42	1.80
6628486--6628549	25	2.4	26	84	10	85	54	18	7	18	1.67
6629020--6629073	9	5.5	10	85	14	53	29	0	7	62	1.22
6629025--6629156	16	7.9	16	69	20	60	28	0	5	65	1.20
6629042--6629116	40	1.9	37	74	12	62	28	1	5	65	1.22
6630144--6630202	17	3.8	16	76	14	61	15	8	0	76	1.01
6630155--6630232	31	2.5	30	83	10	86	14	10	1	74	1.13
6630245--6630511	58	4.7	58	86	6	366	46	5	12	35	1.65
6634376--6634483	11	10.5	11	80	15	58	76	0	16	6	0.98
6634375--6634486	20	6.1	19	70	23	64	75	0	17	6	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6634407--6634437	12	2.6	12	100	0	62	87	0	12	0	0.55
6634420--6634482	9	6.8	9	80	12	56	80	0	14	4	0.86
6636004--6636136	42	3.1	42	87	6	171	24	16	23	35	1.95
6636360--6636496	3	44.3	3	70	22	63	28	0	5	66	1.13
6636358--6636495	45	3.0	45	73	14	122	28	0	5	65	1.15
6637352--6637389	13	3.1	13	85	11	53	18	0	2	78	0.86
6637352--6637389	4	9.5	4	83	11	51	18	0	2	78	0.86
6637412--6637463	27	1.9	27	85	14	72	11	7	1	78	1.02
6637428--6637468	10	4.0	10	81	6	55	9	4	2	82	0.89
6637430--6637469	21	2.0	21	90	9	66	10	7	2	80	1.00
6637506--6637779	58	4.8	56	82	11	315	46	7	10	35	1.67
6637508--6637779	61	4.7	57	86	7	354	46	6	11	35	1.66
6638493--6638528	17	2.1	17	90	10	56	30	0	0	69	0.89
6641307--6641369	32	2.0	32	90	0	99	30	22	1	46	1.61
6641549--6641799	98	2.6	99	86	5	309	49	11	5	33	1.63
6641576--6641799	98	2.3	98	88	2	317	48	12	6	33	1.65
6644395--6644480	32	2.6	32	81	3	91	37	11	6	44	1.68
6649115--6649175	3	21.0	3	75	12	56	29	4	3	62	1.32
6649115--6649176	20	3.4	18	82	8	65	30	4	3	61	1.33
6649154--6649251	5	19.8	5	79	15	62	37	0	9	53	1.33
6649152--6649214	16	3.9	17	80	15	62	38	0	9	52	1.34
6649224--6649418	3	67.3	3	75	8	127	28	4	4	63	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6649962--6650000	18	2.1	19	85	4	53	20	2	25	51	1.60
6650244--6650284	19	2.2	19	90	0	64	12	2	4	80	0.97
6650239--6650296	30	1.9	30	86	13	84	13	1	6	77	1.05
6650253--6650313	29	2.1	29	82	11	72	16	1	4	77	1.03
6650276--6650340	26	2.5	26	85	11	82	21	4	1	72	1.11
6650251--6650340	25	3.9	22	78	17	78	20	3	3	73	1.12
6651703--6652076	186	2.0	186	87	1	543	31	19	13	36	1.90
6654317--6654343	12	2.2	12	100	0	54	55	25	7	11	1.61
6655570--6655609	20	2.0	20	90	0	62	72	5	12	10	1.26
6657375--6657995	231	2.7	230	79	6	643	30	12	13	43	1.81
6657375--6658078	228	3.1	226	76	9	656	29	13	13	42	1.83
6658130--6658201	33	2.2	33	85	2	92	30	19	15	34	1.93
6658482--6658543	24	2.6	25	84	7	92	22	11	22	43	1.85
6658441--6658599	81	2.0	82	83	1	203	24	13	19	42	1.88
6658818--6658869	24	2.3	23	83	12	63	69	15	1	13	1.28
6658824--6658869	24	1.9	24	86	8	67	67	15	2	15	1.33
6659362--6659410	18	2.7	18	81	9	55	36	16	6	40	1.73
6659375--6659410	18	1.9	19	88	5	56	38	13	5	41	1.68
6663860--6663884	8	3.1	8	100	0	50	52	12	24	12	1.72
6664803--6664832	14	2.1	15	93	6	53	90	6	0	3	0.56
6665504--6665570	32	2.1	33	82	2	82	43	1	2	52	1.25
6665670--6665699	13	2.3	13	94	0	51	26	6	0	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6665838--6665873	18	1.9	19	94	5	65	58	0	0	41	0.98
6665873--6665921	22	2.3	22	76	16	57	46	0	4	48	1.20
6667188--6667236	25	2.1	24	85	11	66	44	0	8	46	1.33
6667568--6667598	12	2.5	13	94	5	55	38	6	9	45	1.63
6667733--6667839	34	3.1	34	78	4	90	41	3	11	43	1.58
6667867--6667900	17	2.0	17	88	11	52	70	0	0	29	0.87
6676421--6676458	13	3.0	13	88	3	51	63	0	0	36	0.95
6676637--6676669	16	2.1	15	94	5	57	75	0	0	24	0.80
6677214--6677312	41	2.4	41	85	8	121	49	0	4	46	1.20
6677846--6677882	12	3.1	12	92	0	56	37	24	10	27	1.88
6681806--6681852	2	23.5	2	95	0	85	48	0	2	48	1.13
6688792--6688836	19	2.4	19	100	0	90	22	8	17	51	1.73
6690724--6690764	16	2.4	18	76	23	52	39	0	0	60	0.96
6691358--6691403	18	2.4	19	85	7	58	30	0	2	67	1.03
6691557--6691591	11	3.3	11	88	4	54	48	0	0	51	1.00
6695294--6695360	19	3.5	20	71	19	52	53	1	1	43	1.19
6695326--6695356	10	3.2	10	95	4	55	61	0	0	38	0.96
6696538--6696610	30	2.5	31	78	14	75	35	9	6	47	1.63
6697136--6697176	23	1.9	22	85	14	59	53	0	2	43	1.13
6702450--6702479	12	2.5	12	94	0	51	20	20	0	60	1.37
6703406--6703439	17	2.0	17	88	0	50	29	0	0	70	0.87
6705337--6705396	30	2.0	30	100	0	120	30	10	13	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6705602--6705654	25	2.1	25	93	6	90	28	3	22	45	1.70
6713207--6713249	21	2.0	21	86	8	61	83	6	4	4	0.89
6713523--6713588	28	2.2	29	78	10	71	53	1	1	43	1.19
6714092--6714130	16	2.4	17	87	12	55	69	2	0	28	1.02
6714225--6714256	15	2.1	16	94	5	57	68	0	0	31	0.90
6714837--6714870	11	3.2	11	91	4	52	50	5	0	44	1.26
6719557--6719631	6	12.2	6	75	10	53	72	9	0	18	1.11
6720005--6720102	35	2.8	35	80	6	92	31	10	19	38	1.85
6720031--6720102	18	4.1	17	75	8	56	31	12	19	36	1.89
6720060--6720144	18	4.8	18	76	9	61	35	12	15	36	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138