genome.fa.s124.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  67  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13108379--13108681	159	1.9	158	80	3	358	22	30	28	19	1.98
13108695--13108747	26	2.0	26	96	0	97	24	16	28	30	1.97
13109522--13109574	26	2.0	26	92	0	88	24	18	28	28	1.98
13110127--13110157	11	2.8	11	90	0	53	19	32	25	22	1.97
13111102--13111154	26	2.0	26	92	0	88	28	18	26	26	1.98
13111986--13112038	26	2.0	26	88	0	79	26	18	26	28	1.98
13112733--13113191	159	2.9	159	78	3	406	22	31	27	18	1.97
13113579--13113630	26	2.0	26	85	7	70	30	21	21	26	1.98
13113604--13114097	158	3.1	156	72	8	426	24	27	26	21	1.99
13114079--13114128	25	2.0	26	88	4	75	26	12	28	34	1.92
13120647--13120699	26	2.0	26	92	7	90	28	20	24	26	1.99
13121367--13121419	26	2.0	26	89	7	81	28	18	24	28	1.98
13121867--13121919	26	2.0	26	89	7	81	24	16	28	30	1.97
13121346--13122248	500	1.8	499	82	1	1182	25	28	25	20	1.99
13122327--13122379	26	2.0	26	88	0	79	24	16	28	30	1.97
13122682--13122734	26	2.0	26	92	7	90	30	20	22	26	1.98
13122707--13123070	159	2.3	160	78	9	382	24	31	25	18	1.98
13123189--13123241	26	2.0	26	92	0	88	30	20	22	26	1.98
13123934--13124357	159	2.7	159	81	5	457	24	28	27	19	1.98
13124411--13124468	26	2.2	26	78	0	71	24	18	29	27	1.98
13124795--13124847	26	2.0	26	89	7	81	28	18	24	28	1.98
13125294--13125346	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13125636--13125688	26	2.0	26	85	7	72	28	20	22	28	1.99
13126358--13126408	26	2.0	26	88	7	77	29	17	23	29	1.97
13126709--13127162	185	2.5	183	80	4	545	24	28	27	19	1.99
13127043--13127095	26	2.0	26	88	0	79	26	18	26	28	1.98
13128061--13128113	26	2.0	26	92	0	88	26	20	26	26	1.99
13128734--13128786	26	2.0	26	92	0	88	28	16	26	28	1.97
13129114--13129166	26	2.0	26	92	7	90	28	20	24	26	1.99
13129140--13129641	159	3.2	157	77	7	496	22	29	27	20	1.99
13129616--13129667	26	2.0	26	92	3	88	23	19	28	28	1.98
13130280--13130333	26	2.1	26	89	0	81	25	18	27	27	1.98
13130535--13130585	26	2.0	26	92	0	84	25	21	27	25	1.99
13130161--13130659	252	2.0	252	91	0	802	24	25	30	19	1.98
13130739--13130791	26	2.0	26	85	0	70	30	16	22	30	1.96
13131639--13131691	26	2.0	26	92	7	90	28	20	24	26	1.99
13131619--13132034	184	2.3	185	86	1	566	25	28	24	21	1.99
13132522--13132812	158	1.8	158	79	8	342	26	29	24	19	1.99
13132850--13132902	26	2.0	26	82	7	63	30	16	26	26	1.97
13132876--13133375	158	3.2	153	73	9	423	23	29	27	19	1.98
13134072--13134150	26	3.0	26	87	3	106	30	18	24	26	1.98
13134158--13134473	165	1.9	166	79	3	359	23	29	27	19	1.98
13134447--13134695	138	1.8	138	81	3	313	24	27	29	18	1.98
13134743--13134821	26	3.0	26	94	0	140	24	18	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13134876--13134911	13	2.8	13	86	0	54	19	19	50	11	1.77
13135016--13135074	26	2.2	26	81	3	64	32	25	18	23	1.97
13136871--13137691	159	5.2	159	76	6	678	20	30	28	20	1.98
13136613--13137680	318	3.4	317	80	3	1057	21	29	27	20	1.98
13137754--13138182	158	2.7	157	77	7	413	23	30	28	17	1.97
13138223--13138282	26	2.4	26	83	10	72	28	18	25	28	1.98
13138953--13139454	158	3.2	158	75	7	435	24	30	25	19	1.98
13141374--13141426	26	2.0	26	89	7	81	30	20	24	24	1.99
13141216--13141585	184	2.0	185	84	2	476	25	30	25	18	1.98
13141400--13141862	159	2.9	158	79	5	474	24	30	27	17	1.97
13148491--13148543	26	2.0	26	85	7	72	28	20	24	26	1.99
13148517--13148825	159	1.9	159	82	5	383	23	30	27	18	1.98
13148525--13148963	159	2.8	156	77	7	377	24	30	27	17	1.97
13148993--13149045	26	2.0	26	88	0	79	26	18	26	28	1.98
13149718--13149770	26	2.0	26	89	7	81	28	20	26	24	1.99
13149743--13150025	157	1.8	156	91	1	442	21	33	29	15	1.95
13150414--13150466	26	2.0	26	89	7	81	28	18	24	28	1.98
13150917--13150967	26	2.0	26	88	7	77	27	19	27	25	1.99
13151987--13152034	25	1.9	25	95	0	87	27	20	25	27	1.99
13153432--13153482	26	2.0	26	92	7	86	29	19	23	27	1.98
13153933--13153985	26	2.0	26	88	0	79	26	18	26	28	1.98
13154656--13154708	26	2.0	26	92	7	90	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13154826--13155193	196	1.9	196	82	4	474	25	27	25	21	1.99
13156281--13156333	26	2.0	26	89	7	81	30	20	22	26	1.98
13156624--13156674	26	2.0	26	88	0	75	27	15	25	31	1.96
13156466--13156976	196	2.7	190	81	6	590	23	28	27	21	1.99
13158535--13158835	159	1.9	160	86	2	426	23	31	26	17	1.97
13159000--13159049	26	1.9	26	95	0	91	26	22	28	24	1.99
13159891--13159942	26	2.0	26	92	0	86	25	17	28	28	1.97
13157228--13159982	889	3.1	883	86	2	3737	23	28	26	21	1.99
13160639--13161055	159	2.6	158	79	4	462	25	29	26	18	1.98
13161756--13161807	26	2.0	25	92	3	86	28	19	23	28	1.98
13161755--13162556	343	2.3	342	77	7	810	24	28	26	20	1.99
13162453--13162505	26	2.0	26	82	7	63	30	16	22	30	1.96
13162663--13162714	26	2.0	26	88	7	79	30	19	25	25	1.98
13163165--13163217	26	2.0	26	88	0	79	30	18	22	28	1.98
13164030--13164082	26	2.0	26	86	13	74	30	16	24	28	1.97
13164895--13164947	26	2.0	26	88	0	79	26	18	26	28	1.98
13165593--13165645	26	2.0	26	89	7	81	30	20	22	26	1.98
13165936--13165990	26	2.1	26	86	0	74	25	16	25	32	1.96
13167047--13167099	26	2.0	26	92	0	88	24	18	28	28	1.98
13167720--13167770	26	2.0	26	92	0	84	25	15	29	29	1.96
13166357--13167823	672	2.2	672	81	4	1674	23	28	27	20	1.99
13168625--13168677	26	2.0	26	96	0	97	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13168446--13168781	181	1.9	181	87	5	500	23	27	29	19	1.98
13168650--13169186	154	3.4	158	78	10	538	22	30	28	18	1.97
13174233--13174288	26	2.2	26	87	6	78	30	25	17	26	1.97
13174330--13174798	158	3.0	158	76	6	511	18	26	30	23	1.98
13174262--13174762	159	3.2	156	75	8	492	19	25	29	24	1.99
13174922--13174972	26	2.0	26	96	0	93	27	27	19	25	1.99
13175226--13175258	11	3.0	11	90	0	57	21	27	33	18	1.96
13175839--13175889	26	2.0	26	92	0	84	29	29	15	25	1.96
13175865--13176365	158	3.2	157	74	8	494	20	27	28	23	1.99
13176510--13176562	26	2.0	26	89	7	81	28	28	16	26	1.97
13177198--13177250	26	2.0	26	88	0	79	28	26	18	26	1.98
13177940--13177992	26	2.0	26	85	7	72	28	22	18	30	1.98
13178639--13178691	26	2.0	26	88	0	79	28	26	18	26	1.98
13181362--13181858	163	3.1	152	74	14	416	21	27	28	22	1.99
13181832--13181884	26	2.0	26	89	7	81	26	20	20	32	1.98
13182181--13182233	26	2.0	26	89	7	81	28	28	18	24	1.98
13182347--13183024	159	4.3	158	75	5	591	18	27	31	23	1.97
13182347--13183024	314	2.1	316	84	2	871	18	27	31	23	1.97
13183711--13183761	26	2.0	26	88	0	75	27	27	17	27	1.98
13183791--13184240	159	2.8	160	75	10	377	21	27	27	23	1.99
13184212--13184264	26	2.0	26	89	7	81	26	26	18	28	1.98
13184421--13184473	26	2.0	26	85	7	72	32	30	13	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13184921--13184973	26	2.0	26	85	7	72	24	24	20	30	1.99
13185618--13186118	159	3.2	154	76	10	458	20	27	28	23	1.99
13186288--13186340	26	2.0	26	85	7	72	30	26	16	26	1.97
13186438--13186816	158	2.4	158	76	4	368	20	28	28	23	1.99
13186506--13186806	158	1.9	159	81	2	372	19	28	29	22	1.98
13186789--13186841	26	2.0	26	89	7	81	26	22	20	30	1.98
13187501--13187553	26	2.0	26	89	7	81	26	24	22	26	2.00
13188003--13188055	26	2.0	26	89	7	81	26	22	20	30	1.98
13188223--13188367	71	2.0	71	97	0	272	19	18	41	20	1.91
13188441--13188494	26	2.1	26	82	0	63	25	29	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138