Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  12  of  138  ( 16447 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3399058--3399099
11
3.7
11
96
3
75
78
7
0
14
0.95
3399478--3399522
20
2.2
20
88
0
63
8
26
33
31
1.87
3399534--3399593
31
1.9
31
86
0
84
28
23
25
23
2.00
3400580--3400611
12
2.6
13
85
14
50
65
0
0
34
0.93
3400660--3400685
13
2.0
13
100
0
52
61
0
0
38
0.96
3402116--3402155
18
2.3
18
87
12
57
40
2
0
57
1.12
3404439--3404481
2
21.5
2
100
0
86
51
0
48
0
1.00
3413698--3413735
18
2.1
19
90
5
60
57
0
2
39
1.12
3415157--3415198
20
2.1
20
100
0
84
45
9
21
23
1.81
3419130--3419160
12
2.5
13
94
5
55
45
0
0
54
0.99
3419134--3419167
12
2.8
12
86
4
50
38
0
0
61
0.96
3423696--3423754
31
1.9
31
82
6
75
42
5
5
47
1.47
3423933--3424044
45
2.4
47
76
16
119
45
5
0
48
1.31
3425729--3426130
200
2.0
205
90
2
634
20
13
18
47
1.82
3434628--3434683
27
2.1
27
86
0
76
28
19
12
39
1.88
3435263--3435342
40
2.0
40
90
0
124
21
20
5
53
1.64
3436453--3436494
17
2.5
17
76
7
50
16
14
26
42
1.86
3437394--3438946
529
3.0
510
78
9
1559
31
13
21
34
1.92
3442767--3442960
99
2.0
97
85
2
262
24
17
10
46
1.80
3446619--3446658
16
2.4
17
83
8
55
40
0
0
60
0.97
3447683--3447737
10
5.5
10
80
0
56
49
14
1
34
1.54
3449157--3449254
49
2.0
50
97
2
189
26
4
7
62
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3449156--3449234
24
3.2
24
64
22
65
24
5
7
63
1.41
3457709--3457736
2
14.0
2
100
0
56
50
0
0
50
1.00
3462630--3462668
12
3.2
12
82
7
51
61
0
0
38
0.96
3462628--3462678
25
2.0
26
88
3
77
64
0
0
35
0.94
3464395--3465326
372
2.5
372
85
4
1207
28
21
29
20
1.98
3466164--3466188
13
1.9
13
100
0
50
20
0
0
80
0.72
3472739--3472780
21
2.1
20
91
8
68
64
0
4
30
1.14
3484371--3484497
61
2.1
62
96
1
238
30
20
17
31
1.95
3488812--3488849
14
2.6
15
83
8
51
23
0
2
73
0.95
3497168--3497239
3
24.0
3
73
10
58
31
1
40
26
1.65
3502978--3503136
85
1.9
85
98
0
309
35
7
22
33
1.83
3507041--3507253
115
1.9
115
83
0
282
31
22
23
23
1.98
3509032--3509066
16
2.2
16
94
0
61
45
14
5
34
1.68
3511111--3511361
126
2.0
126
94
0
439
34
15
18
31
1.92
3513655--3514209
277
2.0
277
96
0
1031
28
23
12
36
1.91
3527010--3527209
99
2.0
99
89
0
301
34
13
13
39
1.83
3539293--3539383
45
2.0
45
91
4
148
25
17
19
37
1.94
3545455--3545496
2
21.0
2
100
0
84
0
50
0
50
1.00
3550867--3551184
157
2.0
157
100
0
636
38
10
18
32
1.85
3557487--3557526
21
2.0
20
85
14
55
50
2
2
45
1.28
3557641--3557705
32
2.0
33
93
6
114
44
0
15
40
1.46
3559826--3559857
2
16.0
2
100
0
64
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3560093--3560135
22
2.0
22
95
0
77
32
11
11
44
1.77
3561583--3561666
41
2.0
41
100
0
168
42
14
14
28
1.84
3562866--3562897
2
16.0
2
100
0
64
50
0
0
50
1.00
3564416--3564660
122
2.0
122
98
0
472
31
17
13
38
1.87
3566981--3567010
10
3.1
10
90
9
53
60
10
20
10
1.57
3566980--3567010
9
3.3
9
91
8
53
58
9
19
12
1.62
3569185--3569228
22
2.0
22
95
0
79
31
11
13
43
1.80
3569609--3569651
18
2.4
18
96
0
77
30
6
25
37
1.82
3573077--3573120
22
2.0
22
95
0
79
31
11
13
43
1.80
3587291--3587334
22
2.0
22
90
0
70
34
11
11
43
1.77
3587477--3587525
24
2.0
24
84
7
64
22
18
6
53
1.66
3591789--3591838
15
3.3
15
73
18
50
52
0
0
48
1.00
3594662--3594689
2
14.0
2
100
0
56
50
0
0
50
1.00
3597133--3597192
15
4.1
14
79
12
52
48
3
3
45
1.35
3597096--3597180
6
13.3
6
75
15
57
50
2
2
44
1.27
3604291--3604473
91
2.0
91
93
2
314
22
16
17
43
1.88
3608161--3608205
22
2.0
22
82
0
54
46
20
2
31
1.62
3614070--3614123
19
2.9
18
81
10
65
62
3
0
33
1.12
3614228--3614269
22
1.9
22
95
0
75
69
9
4
16
1.33
3614266--3614300
11
3.2
11
91
0
52
57
2
0
40
1.14
3614729--3614779
3
17.0
3
95
0
93
66
1
0
31
1.03
3615434--3615479
14
3.4
14
79
11
51
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3636363--3636395
17
1.9
17
88
11
50
66
0
3
30
1.06
3649107--3649373
147
1.8
147
87
6
398
27
23
17
31
1.97
3649239--3649537
132
2.3
133
82
5
372
28
25
15
30
1.96
3658748--3658782
18
2.0
17
88
5
52
51
2
2
42
1.31
3660689--3660717
2
14.5
2
100
0
58
51
0
0
48
1.00
3666817--3666864
16
3.0
15
82
11
60
25
0
2
72
0.95
3666922--3666980
27
2.3
24
81
16
66
49
6
0
44
1.29
3668294--3668387
43
2.3
43
81
5
113
43
17
9
29
1.80
3668661--3668708
16
2.9
16
81
6
51
41
14
8
35
1.76
3669009--3669300
108
2.7
107
86
7
401
36
15
9
39
1.79
3669009--3669300
109
2.7
111
85
7
409
36
15
9
39
1.79
3670531--3670589
18
3.3
18
75
13
59
13
13
1
71
1.23
3670533--3670589
17
3.3
17
79
13
62
14
12
1
71
1.21
3670532--3670628
9
11.8
8
71
21
51
14
13
1
71
1.21
3670579--3670621
14
2.9
14
80
12
50
16
16
0
67
1.24
3670585--3670619
16
2.2
16
94
0
61
14
11
0
74
1.08
3670593--3670639
24
1.9
24
82
4
58
14
19
0
65
1.26
3677003--3677037
2
17.5
2
100
0
70
48
0
0
51
1.00
3677188--3677216
13
2.1
14
93
6
51
68
3
6
20
1.27
3678904--3678936
2
16.5
2
93
0
57
45
0
51
3
1.16
3680516--3680542
9
3.0
9
100
0
54
55
11
0
33
1.35
3680725--3680827
9
11.7
9
67
15
54
47
0
2
49
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3680812--3680842
15
2.1
15
93
0
53
41
0
0
58
0.98
3681460--3681518
29
2.0
30
83
9
77
35
3
0
61
1.13
3681489--3681553
24
2.6
24
80
4
67
33
1
0
64
1.03
3681504--3681576
24
2.9
25
76
10
69
32
1
1
64
1.11
3681517--3681550
15
2.3
15
89
0
50
26
0
0
73
0.83
3681547--3681585
19
2.0
20
85
5
53
46
0
2
51
1.14
3682929--3682998
26
2.5
26
81
9
68
55
0
1
42
1.08
3683170--3683219
23
2.1
24
88
3
75
50
0
4
46
1.20
3688096--3688141
24
1.9
24
90
0
74
47
2
10
39
1.51
3688579--3688622
9
5.0
9
91
8
65
68
2
0
29
1.02
3695437--3695468
6
5.3
6
100
0
64
15
15
50
18
1.79
3696153--3696186
12
2.8
12
91
8
52
35
0
0
64
0.94
3696155--3696213
22
2.8
20
80
14
57
30
0
0
69
0.89
3696182--3696213
15
2.1
15
94
0
55
28
0
0
71
0.86
3697050--3697099
26
2.0
26
84
11
68
58
0
0
42
0.98
3698236--3698278
12
3.2
12
77
22
50
62
0
0
37
0.95
3698570--3698610
18
2.2
19
95
4
75
36
0
0
63
0.95
3699437--3699499
31
2.0
31
93
0
108
33
12
7
46
1.71
3701677--3701741
34
1.9
33
84
3
85
40
1
6
52
1.36
3708118--3708197
40
2.0
40
97
0
151
30
38
10
21
1.86
3708233--3708295
21
2.9
21
76
7
63
60
0
3
36
1.13
3712190--3712224
2
17.5
2
100
0
70
0
51
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3715485--3715532
23
2.1
22
84
3
60
43
0
4
52
1.20
3717904--3718048
30
4.7
30
68
24
106
53
1
3
41
1.26
3717863--3718047
93
2.0
93
97
0
352
54
2
5
37
1.35
3721377--3721421
21
2.0
22
83
8
56
53
0
0
46
1.00
3721554--3721602
23
2.0
25
88
7
75
38
6
2
53
1.38
3721554--3721605
25
2.0
25
85
10
70
40
5
1
51
1.37
3722546--3722595
17
3.1
17
77
11
59
46
2
0
52
1.12
3722545--3722610
26
2.5
25
76
9
69
42
1
0
56
1.08
3726093--3726155
25
2.4
27
84
12
78
39
1
1
57
1.18
3730879--3730932
27
2.0
27
92
0
90
46
12
24
16
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138