genome.fa.s124.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  66  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13026307--13026358	26	2.0	26	88	7	79	26	25	17	30	1.97
13026661--13026713	26	2.0	26	96	0	97	26	28	20	24	1.99
13027497--13027549	26	2.0	26	92	7	90	26	26	20	26	1.99
13027928--13027980	26	2.0	26	89	7	81	26	22	20	30	1.98
13028652--13028704	26	2.0	26	88	0	79	28	22	22	26	1.99
13028996--13029064	26	2.7	26	100	0	138	26	27	15	30	1.96
13029744--13029796	26	2.0	26	85	0	70	28	24	20	26	1.99
13029830--13030590	159	4.8	158	73	4	557	19	26	30	23	1.98
13029770--13030439	317	2.1	317	83	4	825	19	26	29	23	1.98
13030564--13030615	26	2.0	26	92	0	86	28	28	17	25	1.97
13030404--13030774	184	2.0	185	80	3	408	21	26	29	23	1.99
13031064--13031116	26	2.0	26	88	0	79	28	28	16	26	1.97
13030087--13031626	501	3.1	501	81	4	1538	20	26	28	23	1.99
13032283--13032338	26	2.2	26	90	6	87	28	21	19	30	1.98
13038856--13038908	26	2.0	26	85	7	72	32	28	15	24	1.95
13039358--13039410	26	2.0	26	92	7	90	26	24	20	28	1.99
13039199--13039596	185	2.2	185	88	3	588	21	26	27	24	1.99
13039543--13039595	26	2.0	26	92	7	90	26	24	20	28	1.99
13041150--13041525	158	2.4	159	78	6	386	20	27	26	25	1.99
13041497--13041549	26	2.0	26	89	7	81	28	22	18	30	1.98
13041403--13041774	196	1.9	196	83	3	489	20	26	29	24	1.99
13042173--13042225	26	2.0	26	85	0	70	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13042553--13042605	26	2.0	26	96	0	97	26	28	20	24	1.99
13043053--13043105	26	2.0	26	89	7	81	26	22	20	30	1.98
13043243--13043594	159	2.2	159	81	3	395	18	25	31	25	1.98
13043339--13043754	159	2.6	156	80	3	420	19	25	29	25	1.99
13043472--13043909	158	2.8	156	79	6	429	21	26	27	24	1.99
13043885--13043935	26	2.0	26	92	0	84	27	25	17	29	1.98
13045137--13045638	158	3.2	157	79	5	553	19	28	29	22	1.98
13046468--13046860	158	2.5	157	79	3	367	20	27	29	22	1.98
13046645--13047950	343	3.7	342	77	10	925	21	26	27	23	1.99
13047554--13047609	26	2.2	26	90	0	85	32	26	16	25	1.96
13047180--13047953	343	2.3	342	85	2	989	22	26	27	24	2.00
13047899--13047951	26	2.0	26	85	7	72	30	24	16	28	1.97
13049094--13049145	26	2.0	26	88	7	79	30	21	21	26	1.98
13049409--13049461	26	2.0	26	88	0	79	30	28	16	24	1.97
13049752--13049804	26	2.0	26	89	7	81	28	26	18	26	1.98
13050665--13051116	159	2.9	156	78	7	473	19	27	29	23	1.98
13051089--13051140	26	2.0	26	88	7	79	26	23	19	30	1.98
13051818--13051869	26	2.0	26	88	0	77	26	25	21	26	1.99
13052319--13052371	26	2.0	26	89	7	81	26	22	22	28	1.99
13052686--13052738	26	2.0	26	92	0	88	26	26	20	26	1.99
13053184--13053262	26	3.0	26	94	3	133	27	24	18	29	1.98
13053236--13053744	158	3.2	157	76	6	422	20	27	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13052686--13053735	525	2.0	524	83	4	1312	19	27	29	23	1.98
13054063--13054115	26	2.0	26	89	7	81	30	26	18	24	1.98
13054089--13054588	158	3.2	156	74	10	433	20	28	28	23	1.99
13055995--13056537	158	3.4	156	77	6	482	19	26	29	24	1.99
13056513--13056563	26	2.0	26	88	7	77	29	23	15	31	1.95
13057739--13057788	26	1.9	26	92	8	84	26	26	20	28	1.99
13057586--13057947	184	2.0	184	83	3	469	19	26	29	24	1.99
13058104--13058156	26	2.0	26	88	0	79	28	26	18	26	1.98
13060391--13060443	26	2.0	26	92	0	88	28	28	18	24	1.98
13059415--13061810	852	2.8	848	80	6	2498	21	27	28	22	1.99
13060417--13060918	158	3.2	159	75	8	477	21	26	28	24	1.99
13060764--13061102	184	1.8	185	84	1	466	20	25	30	23	1.98
13061260--13061312	26	2.0	26	96	0	97	26	28	20	24	1.99
13061634--13062008	196	1.9	196	83	4	488	22	25	28	24	2.00
13063030--13063525	158	3.1	156	74	9	475	19	26	29	23	1.98
13064509--13064559	26	2.0	26	96	0	93	29	29	15	25	1.96
13065481--13065531	26	2.0	26	96	0	93	27	23	19	29	1.98
13065512--13065846	157	2.1	157	83	6	417	20	27	28	23	1.99
13065822--13065872	26	2.0	26	88	7	77	29	21	17	31	1.96
13066029--13066081	26	2.0	26	89	7	81	28	26	18	26	1.98
13066384--13066436	26	2.0	26	89	7	81	30	28	16	24	1.97
13066410--13066945	158	3.4	157	74	5	461	23	26	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13067765--13067817	26	2.0	26	92	0	88	28	28	18	24	1.98
13067962--13068013	26	2.0	26	85	7	70	28	23	17	30	1.97
13072175--13072226	26	2.0	26	85	7	70	26	25	19	28	1.98
13072508--13072560	26	2.0	26	88	0	79	26	24	22	26	2.00
13072598--13073352	158	4.8	157	73	8	546	17	27	31	23	1.97
13072534--13073352	317	2.6	316	85	2	1011	18	26	31	23	1.98
13074025--13074414	159	2.5	159	82	2	435	20	26	29	22	1.99
13074290--13074730	170	2.6	170	78	3	429	19	27	28	24	1.99
13074702--13074754	26	2.0	26	88	0	79	28	26	18	26	1.98
13074728--13075230	158	3.2	158	78	5	520	18	27	30	23	1.98
13075203--13075254	26	2.0	25	89	10	79	26	23	21	28	1.99
13075605--13075657	26	2.0	26	88	0	79	28	26	18	26	1.98
13076355--13076438	44	1.9	44	85	0	114	20	30	26	22	1.98
13079523--13079905	157	2.4	157	74	5	364	24	28	24	22	1.99
13079879--13079931	26	2.0	26	88	0	79	26	18	26	28	1.98
13080056--13080498	159	2.8	157	78	6	479	24	29	27	18	1.98
13081139--13081596	159	2.9	156	80	6	417	23	31	27	17	1.97
13081142--13081629	156	3.1	156	79	6	547	23	30	27	18	1.98
13081603--13081655	26	2.0	26	85	7	72	26	16	28	28	1.97
13082236--13082268	11	3.0	11	95	0	57	15	36	30	18	1.91
13082337--13082389	26	2.0	26	89	7	81	28	18	24	28	1.98
13082839--13082891	26	2.0	26	92	7	90	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13083364--13083416	26	2.0	26	92	0	88	24	18	26	30	1.98
13084957--13085242	158	1.8	158	81	3	360	23	31	26	18	1.97
13085613--13085665	26	2.0	26	89	7	81	30	18	24	26	1.98
13086095--13086147	26	2.0	26	88	0	79	24	20	28	26	1.99
13084752--13086219	678	2.1	685	80	4	1650	24	28	26	20	1.99
13086777--13086829	26	2.0	26	92	7	90	30	20	22	26	1.98
13086776--13087588	355	2.3	351	80	8	821	24	29	25	20	1.99
13088202--13088492	155	1.9	155	80	2	343	24	27	27	20	1.99
13088516--13088568	26	2.0	26	85	0	70	24	18	28	28	1.98
13093361--13093413	26	2.0	26	85	7	72	30	18	22	28	1.98
13093677--13093729	26	2.0	26	92	7	90	28	20	24	26	1.99
13093303--13093900	316	1.9	317	86	1	851	25	27	26	19	1.99
13093702--13094130	159	2.7	159	80	3	479	24	29	28	17	1.98
13094375--13094427	26	2.0	26	89	7	81	28	18	24	28	1.98
13094158--13094521	196	1.9	196	84	1	496	25	27	25	21	1.99
13100491--13100543	26	2.0	26	85	0	70	28	15	28	28	1.96
13101241--13101649	158	2.6	157	78	3	419	25	29	25	18	1.98
13101899--13101951	26	2.0	26	92	7	90	28	20	24	26	1.99
13101924--13102368	157	2.8	157	77	6	425	23	28	28	19	1.98
13103117--13103169	26	2.0	26	89	7	81	28	18	24	28	1.98
13103302--13103354	26	2.0	26	92	0	88	28	18	24	28	1.98
13104026--13104078	26	2.0	26	92	7	90	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13104051--13104478	159	2.7	156	79	6	452	24	30	27	17	1.97
13104222--13105332	355	3.3	343	75	11	1083	22	29	27	20	1.98
13104724--13105224	159	3.2	158	78	4	530	22	28	26	21	1.99
13104698--13105224	158	3.3	158	77	5	465	22	29	26	21	1.99
13105199--13105250	26	2.0	26	88	3	79	25	21	26	26	1.99
13105867--13105919	26	2.0	26	92	0	88	24	18	28	28	1.98
13107127--13107179	26	2.0	26	89	7	81	30	20	20	28	1.98
13107161--13107561	159	2.5	159	78	4	389	25	28	26	19	1.99
13107813--13107865	26	2.0	26	96	0	97	24	20	28	26	1.99
13108194--13108246	26	2.0	26	89	7	81	28	20	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138