genome.fa.s124.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  45  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9719967--9719999	13	2.7	13	90	9	52	30	0	6	63	1.18
9721115--9721139	13	1.9	13	100	0	50	20	16	8	56	1.65
9729528--9729579	26	2.0	26	92	0	86	19	19	7	53	1.68
9731804--9731906	45	2.2	47	86	6	140	33	7	13	44	1.73
9731917--9732096	43	4.1	43	74	12	161	32	7	17	42	1.78
9731947--9732096	21	6.8	21	68	18	90	33	7	18	41	1.78
9731945--9732096	49	3.4	43	77	11	139	34	7	17	40	1.77
9732689--9732730	21	2.2	19	83	12	50	11	7	0	80	0.88
9735622--9735654	17	2.0	17	88	5	50	72	0	0	27	0.85
9736090--9736237	76	1.9	79	84	4	203	30	5	8	55	1.53
9736187--9736404	76	2.9	74	76	9	237	31	10	11	47	1.72
9736587--9736624	20	1.9	20	89	10	60	52	2	0	44	1.14
9736783--9736842	30	2.0	30	86	0	84	23	18	21	36	1.95
9741229--9741276	23	2.0	25	84	8	64	52	20	6	20	1.68
9743931--9743957	9	3.0	9	100	0	54	66	22	0	11	1.22
9762440--9762496	16	3.6	16	81	9	73	35	0	8	56	1.31
9762425--9762499	31	2.4	31	80	4	89	37	5	6	50	1.51
9762764--9762814	19	2.5	19	84	9	66	58	0	1	39	1.09
9762831--9762866	18	2.1	18	89	5	56	66	0	0	33	0.92
9765074--9765167	39	2.4	38	82	6	109	21	2	38	38	1.65
9765186--9765240	19	2.9	19	88	0	74	20	3	36	40	1.70
9765268--9765368	38	2.7	39	86	4	136	18	2	32	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9765343--9765367	13	1.9	13	100	0	50	16	0	32	52	1.44
9765297--9765378	38	2.2	38	86	4	112	18	3	35	42	1.68
9768735--9768787	19	2.7	20	72	21	58	13	11	3	71	1.26
9775905--9776464	144	3.9	142	75	4	462	44	11	10	32	1.76
9786223--9786268	18	2.7	16	86	10	56	17	2	0	80	0.81
9793042--9793078	18	2.1	18	89	0	56	78	0	16	5	0.93
9797517--9797549	13	2.6	13	90	4	50	3	57	9	30	1.45
9811408--9811857	159	2.9	157	80	4	471	31	8	15	44	1.76
9813202--9813250	22	2.1	23	81	7	55	55	4	16	24	1.59
9821530--9821666	62	2.2	61	78	6	143	34	8	20	37	1.82
9821648--9821814	57	2.9	57	73	13	155	34	7	19	38	1.79
9825136--9825169	15	2.3	15	89	0	50	41	26	17	14	1.88
9829417--9829561	49	3.1	49	58	18	108	37	11	17	33	1.85
9829399--9829570	92	1.9	92	96	0	317	36	11	16	34	1.85
9835225--9835254	16	1.9	15	93	6	51	56	0	36	6	1.26
9837324--9837360	2	18.5	2	94	0	65	48	0	2	48	1.15
9839724--9839802	34	2.4	33	81	10	81	15	5	1	78	0.99
9839759--9839797	20	2.0	20	89	0	60	20	2	0	76	0.90
9841880--9841946	21	3.2	20	77	8	62	49	0	13	37	1.42
9850097--9850172	38	1.9	39	82	10	93	55	5	1	38	1.31
9850317--9850355	3	13.0	3	100	0	78	66	0	0	33	0.92
9858194--9858263	32	2.2	31	85	7	88	45	0	1	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9858222--9858288	28	2.4	28	85	11	86	41	0	0	58	0.98
9858657--9858706	10	4.8	11	78	11	52	42	0	0	58	0.98
9862259--9862283	4	6.2	4	100	0	50	24	0	0	76	0.80
9862275--9862322	13	3.8	12	84	13	60	16	4	0	79	0.89
9864490--9864728	120	2.0	120	86	0	334	39	16	9	34	1.81
9880543--9880584	17	2.6	16	85	7	50	19	4	4	71	1.22
9884596--9884875	71	4.0	70	80	8	268	27	11	16	44	1.82
9884760--9884882	65	1.9	65	88	5	185	25	11	18	44	1.83
9884956--9885009	20	2.7	20	91	0	90	33	12	14	38	1.85
9885121--9885295	38	4.6	38	72	12	117	41	11	13	33	1.80
9885094--9885296	77	2.6	76	81	6	230	43	10	14	32	1.79
9885094--9885308	39	5.6	38	73	9	148	42	10	13	33	1.79
9885409--9885614	44	4.8	44	76	7	179	32	10	15	42	1.81
9885668--9885714	24	1.9	25	82	4	60	38	6	8	46	1.60
9885675--9885962	45	6.4	44	76	9	219	35	8	14	41	1.76
9885680--9885962	91	3.1	90	74	13	265	35	8	14	40	1.77
9885809--9885926	24	5.3	22	71	10	87	33	8	14	43	1.76
9885817--9885880	21	2.8	24	74	13	80	32	7	15	43	1.76
9885675--9885962	136	2.1	135	81	6	323	35	8	14	41	1.76
9886478--9886812	144	2.3	142	84	2	411	33	13	11	42	1.80
9888299--9888441	59	2.4	58	85	6	182	48	35	0	16	1.46
9888289--9888400	19	5.7	20	77	6	95	48	33	0	16	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9888381--9888470	40	2.2	40	86	0	126	43	37	1	17	1.57
9888289--9888432	20	7.2	20	73	9	91	47	34	0	16	1.52
9888587--9888646	30	2.0	30	90	6	95	46	36	0	16	1.47
9889826--9889875	17	2.9	17	81	0	64	34	10	8	48	1.66
9889813--9889890	34	2.3	34	84	0	102	29	15	8	46	1.76
9889862--9889920	29	2.0	30	86	3	84	25	15	6	52	1.67
9889943--9890015	37	2.0	35	86	5	101	30	12	8	49	1.69
9889966--9890037	19	3.8	19	75	3	65	30	9	8	51	1.64
9890495--9890530	11	3.3	11	88	0	54	61	0	22	16	1.35
9891159--9891205	17	2.8	17	87	3	60	19	4	4	72	1.18
9892243--9892325	18	4.6	17	73	11	58	27	6	12	54	1.60
9892368--9892447	35	2.3	34	78	6	88	35	10	11	43	1.74
9893239--9893302	32	2.0	32	87	6	94	32	12	25	29	1.92
9894506--9894677	72	2.4	73	80	3	195	45	13	9	30	1.76
9902126--9902165	20	2.0	20	95	0	71	37	10	27	25	1.88
9904666--9904706	19	2.2	19	86	0	55	2	14	2	80	0.92
9906176--9906210	15	2.3	15	90	0	52	17	2	22	57	1.53
9906326--9906371	20	2.3	20	81	7	58	34	0	2	63	1.07
9906563--9906611	20	2.5	19	87	6	71	28	0	6	65	1.16
9907847--9907889	18	2.5	17	85	7	52	23	0	2	74	0.93
9908308--9908375	36	1.9	36	85	5	95	52	11	17	17	1.73
9908327--9908537	34	6.1	36	65	10	98	48	11	19	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9908363--9908477	33	3.4	33	76	7	122	45	8	22	23	1.80
9908316--9908496	69	2.6	68	81	4	220	48	10	19	20	1.78
9908659--9908833	72	2.4	70	71	20	153	39	13	28	18	1.89
9908796--9909103	142	2.2	142	81	4	343	41	15	25	17	1.88
9908553--9909083	251	2.1	249	86	2	735	41	15	25	17	1.88
9908659--9909049	35	10.9	35	72	11	159	41	14	26	17	1.88
9909223--9909342	36	3.4	35	74	12	109	46	16	20	15	1.84
9913455--9914065	304	2.0	305	92	0	1010	28	17	12	40	1.87
9922041--9922105	15	3.9	15	71	24	58	20	1	23	55	1.52
9922213--9922264	19	2.6	21	84	9	72	36	0	1	61	1.07
9923601--9923651	3	17.3	3	87	4	77	64	0	0	35	0.94
9924049--9924088	19	2.1	19	86	13	55	37	0	0	62	0.95
9924208--9924244	7	5.0	7	87	12	56	27	2	0	70	1.01
9924208--9924244	16	2.5	14	91	8	56	27	2	0	70	1.01
9924876--9924931	28	2.0	28	82	10	69	46	0	1	51	1.11
9926073--9926097	2	12.5	2	100	0	50	48	0	0	52	1.00
9926632--9926691	29	2.1	29	90	0	93	46	1	0	51	1.10
9927163--9927199	12	3.0	13	84	11	51	59	10	5	24	1.52
9928155--9928187	15	2.1	16	94	5	59	30	15	0	54	1.41
9928666--9928690	2	12.5	2	100	0	50	52	0	0	48	1.00
9929856--9929914	28	2.2	26	82	11	66	35	3	1	59	1.24
9931132--9931194	23	2.9	22	77	20	69	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9931250--9931279	11	2.7	11	89	0	51	23	60	10	6	1.52
9932605--9932663	29	2.1	28	84	9	75	23	0	3	72	0.99
9932603--9932657	27	2.1	26	83	10	67	23	0	3	72	1.00
9932604--9932653	20	2.4	21	80	6	57	22	0	4	74	0.99
9932958--9933013	3	18.3	3	92	3	94	64	0	1	33	1.04
9933210--9933349	29	4.8	29	74	3	129	45	33	2	17	1.64
9933194--9933263	13	5.1	13	73	13	50	48	32	1	17	1.56
9933194--9933349	58	2.7	57	81	5	188	45	32	3	18	1.65
9933331--9933431	22	5.0	21	71	17	63	53	24	0	20	1.52
9936888--9936969	4	20.5	4	75	9	69	24	23	3	48	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138