genome.fa.s124.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  13  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3736473--3736515	22	2.0	22	86	9	61	32	16	16	34	1.91
3737437--3737474	19	2.0	19	94	0	67	28	0	2	68	1.03
3738206--3738271	30	2.2	30	83	0	78	50	4	1	43	1.32
3738215--3738272	30	1.9	30	85	0	80	51	6	0	41	1.28
3739520--3739554	3	11.7	3	100	0	70	31	0	0	68	0.90
3742502--3742527	5	5.2	5	100	0	52	80	0	19	0	0.71
3743515--3743562	13	3.4	14	84	15	64	56	0	8	35	1.30
3743515--3743579	29	2.2	30	84	10	82	53	0	9	36	1.33
3747799--3747830	3	10.7	3	100	0	64	68	0	0	31	0.90
3752765--3752847	42	2.0	42	95	0	148	34	19	9	36	1.84
3755132--3755163	9	3.6	9	91	0	55	25	28	0	46	1.53
3764301--3764431	6	20.7	6	69	17	61	20	4	1	73	1.09
3764388--3764431	16	2.8	15	80	10	52	18	4	0	77	0.94
3764369--3764431	11	5.7	11	78	10	67	15	7	0	76	1.01
3766953--3766991	20	2.0	20	89	0	60	15	0	20	64	1.30
3767006--3767052	23	2.1	22	84	11	60	27	0	10	61	1.29
3770695--3770780	33	2.6	34	81	5	86	63	5	3	26	1.33
3771772--3771830	27	2.2	26	82	5	73	49	10	32	8	1.67
3776545--3776724	93	1.9	93	95	0	324	29	14	15	41	1.86
3778524--3778586	32	2.0	31	90	3	99	34	3	0	61	1.12
3779708--3779739	16	2.0	16	93	0	55	46	12	15	25	1.81
3785994--3786077	16	5.2	16	88	0	114	51	10	11	26	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3786916--3786950	14	2.5	14	95	0	61	45	5	11	37	1.64
3786983--3787032	16	3.1	16	94	0	82	46	10	18	26	1.80
3790225--3790289	32	2.0	32	84	0	85	29	10	9	50	1.68
3790232--3790290	16	3.7	16	79	0	55	27	13	8	50	1.70
3796364--3796398	2	17.5	2	100	0	70	51	0	48	0	1.00
3799005--3799048	19	2.3	18	88	7	61	31	0	6	61	1.22
3823289--3823332	19	2.3	19	84	11	54	20	2	13	63	1.40
3823292--3823332	20	2.0	21	86	13	59	19	2	14	63	1.41
3825764--3825804	14	2.9	15	86	10	52	48	0	0	51	1.00
3827404--3827471	33	2.2	30	85	12	86	61	7	2	27	1.37
3827729--3827787	28	2.0	30	87	6	86	45	3	0	50	1.18
3837099--3837145	22	2.1	22	84	7	60	23	10	23	42	1.85
3840152--3840190	21	1.9	20	94	0	60	43	15	2	38	1.60
3840188--3840226	19	2.1	18	90	4	60	51	5	5	38	1.46
3842925--3842964	21	1.9	21	85	10	55	47	5	0	47	1.24
3842955--3843212	127	2.0	127	94	3	457	50	6	5	37	1.52
3855644--3855710	24	2.8	24	78	17	68	49	7	2	40	1.46
3858227--3858260	9	3.8	9	92	7	52	41	0	0	58	0.98
3861488--3861524	2	18.5	2	100	0	74	51	0	0	48	1.00
3862503--3862560	25	2.4	25	88	2	82	39	5	3	51	1.41
3863330--3863441	56	2.0	56	100	0	224	44	8	16	30	1.78
3866719--3866754	17	2.1	17	100	0	72	22	5	5	66	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3868746--3868783	2	19.0	2	100	0	76	50	0	0	50	1.00
3870363--3870488	65	1.9	66	86	1	182	21	26	19	31	1.97
3870807--3870848	22	2.0	22	85	4	59	45	0	4	50	1.23
3871030--3871063	14	2.3	15	90	5	52	50	0	0	50	1.00
3870894--3871084	100	1.9	103	86	3	280	48	2	6	42	1.42
3873961--3873997	2	18.5	2	100	0	74	51	0	48	0	1.00
3874005--3874042	17	2.2	18	85	4	51	7	2	5	84	0.86
3874727--3874771	20	2.2	20	92	0	72	53	0	0	46	1.00
3876455--3876480	12	2.2	12	100	0	52	34	15	15	34	1.89
3886598--3886654	16	3.4	16	73	17	53	45	1	5	47	1.35
3886603--3886660	19	3.3	19	72	18	61	44	1	5	48	1.35
3891778--3891808	7	4.4	7	95	0	53	70	3	12	12	1.27
3895672--3895714	3	14.3	3	100	0	86	32	0	0	67	0.91
3897516--3897571	12	4.7	12	81	0	67	23	3	8	64	1.38
3897535--3897559	9	2.8	9	100	0	50	24	8	8	60	1.52
3898753--3898820	29	2.6	27	80	19	81	54	1	2	41	1.24
3907318--3907362	19	2.2	21	88	7	67	31	2	4	62	1.27
3908723--3908756	16	2.0	17	88	11	52	38	5	2	52	1.41
3909158--3909206	21	2.4	21	77	16	57	44	2	0	53	1.12
3911713--3911771	28	2.1	28	96	0	109	25	25	18	30	1.98
3920880--3920917	18	2.1	18	90	0	58	36	2	7	52	1.45
3920903--3920988	42	2.1	41	84	6	111	40	4	5	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3921438--3921511	32	2.4	29	75	16	78	66	2	28	2	1.19
3923083--3923121	20	2.1	18	90	9	60	51	0	0	48	1.00
3924285--3924346	28	2.3	27	78	8	65	35	3	8	53	1.47
3924586--3924659	21	3.5	21	80	12	71	48	2	1	47	1.24
3924612--3924641	15	1.9	16	93	6	53	53	0	0	46	1.00
3924900--3924928	14	2.1	14	100	0	58	51	0	0	48	1.00
3940270--3940301	16	2.0	16	93	0	55	46	6	28	18	1.73
3943455--3943851	174	2.2	175	81	7	455	37	12	7	43	1.70
3943867--3943951	5	17.6	5	72	22	58	78	2	4	14	1.00
3943867--3943951	13	6.6	13	73	17	61	78	2	4	14	1.00
3943866--3943951	30	2.9	29	79	6	93	77	2	5	13	1.04
3943867--3943947	22	3.9	19	74	21	65	79	2	4	13	1.01
3944103--3944127	5	5.0	5	100	0	50	0	40	40	20	1.52
3944883--3944996	43	2.6	44	77	15	121	67	5	3	23	1.27
3944979--3945025	18	2.4	19	86	10	60	61	2	2	34	1.20
3944977--3945028	16	2.9	18	78	18	56	63	1	1	32	1.16
3949242--3949307	28	2.4	28	82	5	71	33	0	3	63	1.10
3952929--3953579	234	2.8	234	90	0	1000	17	13	43	25	1.86
3969278--3969334	19	2.9	20	84	5	71	42	0	0	57	0.98
3972034--3972968	234	4.0	232	90	4	1391	17	12	43	26	1.85
3973836--3973870	18	2.0	17	88	5	52	42	0	5	51	1.25
3979573--3979869	148	2.0	148	95	0	531	35	20	19	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3979909--3979957	9	6.2	8	73	21	50	55	2	0	42	1.11
3979920--3979957	14	2.5	16	87	8	53	55	0	0	44	0.99
3980842--3980866	2	12.5	2	100	0	50	52	0	0	48	1.00
3980745--3980949	104	2.0	104	99	0	401	46	13	9	30	1.75
3988517--3988562	14	3.3	14	72	22	51	71	2	8	17	1.21
3988880--3988915	18	2.0	18	89	10	56	72	8	11	8	1.29
3990228--3990293	22	3.0	22	73	13	64	30	1	1	66	1.10
3989421--3990611	597	2.0	604	89	3	1859	40	3	8	47	1.50
3999634--3999675	22	2.0	21	85	4	57	50	2	0	47	1.14
3999681--3999714	14	2.4	14	90	9	52	52	0	0	47	1.00
3999906--3999943	15	2.5	15	87	12	51	47	0	0	52	1.00
4000729--4000772	19	2.4	17	85	11	52	25	2	2	70	1.10
4005432--4005471	21	2.0	20	85	5	53	70	5	2	22	1.19
4005419--4005490	30	2.4	29	82	13	83	68	5	4	22	1.28
4005571--4005652	41	2.0	41	90	0	128	30	15	35	18	1.92
4006438--4006476	3	13.0	3	94	0	69	66	2	0	30	1.05
4006858--4006998	65	2.2	65	80	3	151	54	12	12	19	1.70
4006925--4007164	129	1.9	129	83	0	318	50	13	17	19	1.79
4007055--4007342	130	2.2	130	79	4	285	48	12	17	21	1.79
4007182--4007390	65	3.2	65	78	5	190	48	11	17	22	1.79
4007276--4007484	65	3.2	65	81	1	231	48	11	19	20	1.80
4007872--4008009	73	1.9	73	87	4	206	46	15	12	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4008135--4008174	17	2.4	17	91	0	62	40	7	15	37	1.75
4009276--4009324	22	2.3	22	85	3	64	6	10	2	81	0.94
4012257--4012288	16	2.0	16	93	0	55	65	12	3	18	1.38
4013616--4013645	2	15.0	2	92	0	51	46	0	0	53	1.00
4013689--4013739	4	12.8	4	75	8	50	68	1	3	25	1.17
4013698--4013741	13	3.2	13	84	12	52	68	2	2	27	1.14
4013698--4013758	30	2.1	29	81	9	70	65	6	3	24	1.32
4014672--4014716	3	15.0	3	100	0	90	66	0	0	33	0.92
4014946--4014999	25	2.2	25	86	0	72	37	14	0	48	1.45
4015812--4015878	32	2.1	31	83	2	80	47	1	1	49	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138