genome.fa.s124.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  74  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13678749--13679250	158	3.2	158	76	5	503	19	27	29	23	1.98
13678058--13679447	697	2.0	691	83	4	1735	20	27	28	22	1.99
13679604--13679656	26	2.0	26	88	0	79	30	28	16	24	1.97
13678697--13680995	879	2.6	872	85	2	2974	20	26	28	24	1.99
13680483--13680535	26	2.0	26	85	0	70	30	26	16	26	1.97
13680588--13681313	315	2.3	317	84	1	938	18	26	29	25	1.98
13680741--13681302	159	3.6	158	76	6	537	18	26	29	25	1.98
13681286--13681338	26	2.0	26	85	0	70	28	20	20	30	1.98
13682008--13682060	26	2.0	26	92	0	88	26	26	20	26	1.99
13682541--13682902	158	2.3	159	78	4	372	18	24	30	25	1.98
13683523--13683555	11	3.0	11	90	0	57	15	27	39	18	1.90
13684159--13684856	159	4.4	159	80	5	664	20	26	30	23	1.98
13684977--13685026	26	1.9	26	95	0	91	26	28	20	26	1.99
13685250--13685302	26	2.0	26	92	0	88	30	22	18	28	1.98
13685459--13685511	26	2.0	26	92	0	88	26	30	20	22	1.98
13685485--13685816	159	2.1	158	80	1	360	18	27	31	22	1.97
13687034--13687086	26	2.0	26	88	0	79	30	28	16	24	1.97
13688412--13688461	26	1.9	26	95	0	91	24	20	24	32	1.98
13688698--13688747	26	1.9	26	95	0	91	24	20	24	32	1.98
13688174--13689031	286	3.0	287	99	0	1700	19	28	27	25	1.98
13690557--13690609	26	2.0	26	89	7	81	28	24	18	28	1.98
13691579--13691631	26	2.0	26	85	7	72	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13692078--13692130	26	2.0	26	89	7	81	26	20	20	32	1.98
13693181--13693233	26	2.0	26	92	0	88	28	28	18	24	1.98
13693347--13693710	158	2.3	160	79	5	382	20	25	28	24	1.99
13693588--13693970	195	2.0	195	84	5	504	20	28	29	21	1.98
13693878--13693927	26	1.9	26	91	0	82	28	26	18	28	1.98
13693960--13694247	159	1.8	157	83	6	384	17	28	29	24	1.97
13694220--13694272	26	2.0	26	92	7	90	26	24	20	28	1.99
13694942--13694994	26	2.0	26	85	0	70	28	24	18	28	1.98
13696046--13696719	158	4.2	157	76	7	494	19	26	30	23	1.98
13696694--13696745	26	2.0	26	92	0	86	30	23	21	25	1.99
13696783--13697218	158	2.8	155	79	6	432	18	28	30	22	1.97
13697385--13697437	26	2.0	26	89	7	81	26	20	20	32	1.98
13698119--13698618	158	3.2	152	74	11	436	18	27	31	22	1.97
13698666--13698713	22	2.2	22	96	0	87	29	22	37	10	1.88
13698817--13699314	159	3.1	158	78	7	497	18	26	31	23	1.97
13700019--13700071	26	2.0	26	88	0	79	26	24	20	28	1.99
13700533--13700583	26	2.0	26	88	0	75	27	25	15	31	1.96
13700790--13701389	157	3.8	156	74	7	442	19	26	29	24	1.98
13700661--13701390	316	2.3	322	79	7	802	19	26	29	24	1.98
13701363--13701412	26	1.9	26	88	8	75	24	24	20	32	1.98
13702087--13702139	26	2.0	26	89	7	81	32	30	16	20	1.95
13702429--13702481	26	2.0	26	92	0	88	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13704243--13704298	27	2.1	27	90	6	87	32	17	35	14	1.90
13708734--13709235	159	3.2	159	75	4	478	19	27	30	22	1.98
13709346--13709398	26	2.0	26	92	0	88	32	24	16	26	1.97
13710268--13710768	158	3.2	156	76	7	474	20	26	29	23	1.99
13710912--13710964	26	2.0	26	88	0	79	26	28	20	24	1.99
13711413--13711465	26	2.0	26	92	7	90	26	24	20	28	1.99
13711622--13711674	26	2.0	26	88	0	79	28	26	18	26	1.98
13712123--13712175	26	2.0	26	88	0	79	30	22	15	32	1.94
13712317--13712369	26	2.0	26	85	0	70	28	26	16	28	1.97
13712659--13712711	26	2.0	26	89	7	81	26	22	20	30	1.98
13713024--13713077	26	2.1	26	92	0	90	25	25	22	25	2.00
13713050--13713712	317	2.1	317	79	7	688	20	26	29	24	1.99
13713050--13713703	159	4.1	158	77	5	584	20	26	29	23	1.99
13713688--13713738	26	2.0	26	88	7	77	27	25	15	31	1.96
13714013--13714065	26	2.0	26	92	0	88	26	26	20	26	1.99
13714039--13714540	158	3.2	158	76	5	494	19	27	30	22	1.98
13714514--13714565	26	2.0	26	92	7	88	26	25	19	28	1.98
13714356--13714909	184	3.0	185	82	4	681	20	27	28	23	1.99
13714699--13714751	26	2.0	26	92	7	90	26	22	20	30	1.98
13715665--13715717	26	2.0	26	88	0	79	24	26	22	26	2.00
13715691--13716084	159	2.5	159	77	5	431	20	27	32	19	1.97
13716167--13716219	26	2.0	26	82	7	63	30	22	15	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13716534--13716586	26	2.0	26	85	0	70	30	24	18	26	1.98
13716581--13717058	157	3.0	155	73	11	434	20	26	29	24	1.99
13718350--13718801	159	2.9	159	81	4	486	17	26	32	23	1.97
13718768--13718823	26	2.1	26	86	3	76	19	17	26	35	1.94
13719994--13720046	26	2.0	26	88	0	79	26	24	20	28	1.99
13720349--13720401	26	2.0	26	92	0	88	26	26	20	26	1.99
13719775--13721391	343	4.7	344	81	5	1574	19	26	29	24	1.98
13720426--13720719	159	1.9	158	83	6	389	18	29	30	22	1.97
13720692--13720744	26	2.0	26	92	7	90	26	26	20	26	1.99
13721036--13721088	26	2.0	26	92	0	88	28	28	18	24	1.98
13719805--13721391	687	2.3	689	80	7	1696	19	26	29	24	1.98
13728187--13728236	26	1.9	26	88	8	75	24	28	20	28	1.99
13728666--13728718	26	2.0	26	89	7	81	28	24	18	28	1.98
13728508--13728877	184	2.0	184	83	3	467	20	27	27	24	1.99
13729033--13729085	26	2.0	26	88	0	79	28	26	18	26	1.98
13729531--13729583	26	2.0	26	85	7	72	30	24	16	28	1.97
13729923--13729992	26	2.7	26	93	0	113	25	21	21	31	1.98
13729923--13730001	26	3.0	26	88	3	97	27	21	20	30	1.98
13730158--13730209	25	2.0	26	88	3	79	30	26	19	23	1.98
13729531--13730366	418	2.0	418	94	0	1474	22	25	26	24	2.00
13731694--13731749	26	2.2	26	90	6	87	30	16	19	33	1.94
13732504--13732941	158	2.8	157	77	4	423	17	26	31	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13732914--13732966	26	2.0	26	85	7	72	28	18	20	32	1.97
13733427--13733479	26	2.0	26	92	7	90	26	24	20	28	1.99
13732340--13733517	513	2.3	508	82	4	1475	19	26	30	24	1.98
13733727--13733779	26	2.0	26	92	0	88	24	24	20	30	1.99
13733977--13734029	26	2.0	26	89	7	81	28	22	18	30	1.98
13734123--13734162	13	3.1	13	96	0	71	7	45	22	25	1.78
13734199--13734251	26	2.0	26	92	7	90	26	26	20	26	1.99
13734540--13734592	26	2.0	26	89	7	81	26	22	20	30	1.98
13736480--13736970	185	2.7	184	80	3	565	20	26	28	24	1.99
13743815--13743865	25	2.0	25	92	7	86	27	27	19	25	1.99
13743960--13744311	151	2.4	148	79	11	382	18	26	31	23	1.97
13743840--13744309	146	3.2	148	75	14	454	18	27	32	21	1.97
13744283--13744335	26	2.0	26	92	7	90	26	24	20	28	1.99
13744651--13744703	26	2.0	26	88	0	79	30	24	16	28	1.97
13744705--13745173	159	3.0	159	80	3	455	18	27	30	23	1.98
13746047--13746439	159	2.5	157	74	6	371	19	24	31	24	1.98
13746515--13746568	26	2.0	27	92	3	92	27	24	18	29	1.98
13746765--13746816	26	2.0	26	88	0	77	30	28	15	25	1.96
13746949--13747001	26	2.0	26	89	7	81	28	22	18	30	1.98
13747366--13747418	26	2.0	26	85	7	72	28	24	18	28	1.98
13747479--13747884	157	2.7	149	78	8	381	18	27	27	26	1.98
13747475--13748359	308	2.8	309	81	4	967	19	27	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13747392--13748358	158	6.2	158	78	5	881	20	27	28	23	1.99
13747392--13748358	316	3.1	311	79	5	1018	20	27	28	23	1.99
13748983--13749035	26	2.0	26	92	0	88	32	26	16	24	1.97
13749016--13749393	159	2.4	156	79	4	398	20	25	31	22	1.98
13749485--13749536	26	2.0	26	92	7	88	26	23	19	30	1.98
13748910--13750513	501	3.2	495	80	3	1726	20	27	28	23	1.99
13750113--13750526	158	2.6	159	75	4	381	19	28	28	23	1.98
13750572--13750624	26	2.0	26	88	0	79	26	24	18	30	1.98
13752144--13753101	342	2.8	340	83	3	1095	20	28	27	23	1.99
13753435--13753488	26	2.1	26	89	0	81	29	25	16	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138