genome.fa.s124.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  14  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4025197--4025253	30	1.9	30	88	0	87	52	0	0	47	1.00
4026374--4026399	2	13.0	2	100	0	52	50	0	0	50	1.00
4029483--4029545	31	2.0	31	100	0	126	34	0	36	28	1.58
4029997--4030056	17	3.5	17	71	8	50	38	8	10	43	1.68
4033578--4033623	21	2.2	21	88	3	67	23	6	23	45	1.76
4033578--4033633	21	2.7	21	83	8	62	25	8	21	44	1.81
4046496--4046520	12	2.1	12	100	0	50	28	0	24	48	1.52
4048078--4048132	25	2.2	24	84	9	67	18	5	1	74	1.10
4048430--4048475	17	2.6	17	75	3	56	73	4	2	19	1.10
4048527--4048566	18	2.3	18	87	8	57	20	0	5	75	0.99
4048627--4048656	11	2.7	11	94	0	51	66	0	0	33	0.92
4050840--4050877	20	1.9	20	100	0	76	47	34	0	18	1.49
4053637--4053721	37	2.2	39	85	4	111	44	2	1	51	1.21
4055004--4055035	8	4.2	8	84	15	50	40	0	0	59	0.97
4058759--4058789	15	2.1	15	100	0	62	61	6	6	25	1.45
4059452--4059559	16	6.9	16	66	11	53	21	3	24	50	1.64
4059482--4059565	16	5.3	16	68	12	57	23	3	20	52	1.62
4061087--4061131	18	2.4	18	85	3	54	8	6	13	71	1.31
4072949--4073000	12	4.3	12	90	0	68	19	3	42	34	1.69
4080205--4080232	2	14.0	2	100	0	56	50	0	0	50	1.00
4083814--4083889	39	1.9	39	89	5	118	30	3	30	35	1.76
4094687--4094712	7	3.7	7	100	0	52	30	0	26	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4102736--4102760	12	2.1	12	100	0	50	48	16	0	36	1.46
4103612--4103636	6	4.2	6	100	0	50	84	0	16	0	0.63
4105163--4105214	26	2.0	26	84	3	68	42	1	7	48	1.43
4105222--4105258	18	2.1	18	94	0	65	45	0	0	54	1.00
4105192--4105257	29	2.2	30	81	7	82	50	1	1	46	1.20
4105839--4105879	15	2.4	18	76	19	52	24	0	0	75	0.80
4105950--4105987	18	2.1	19	90	5	60	76	0	0	23	0.79
4106311--4106357	21	2.2	21	84	0	58	53	0	6	40	1.27
4106312--4106364	21	2.3	23	75	9	56	52	0	7	39	1.30
4111223--4111359	18	7.4	18	73	18	95	58	0	0	41	0.98
4111246--4111352	43	2.6	42	89	8	166	57	0	0	42	0.98
4111223--4111341	15	7.5	15	69	26	68	56	0	0	43	0.99
4111223--4111359	10	13.7	10	65	21	56	58	0	0	41	0.98
4114994--4115065	36	2.0	36	88	0	108	30	5	13	50	1.65
4116655--4116690	18	1.9	18	88	5	54	63	0	0	36	0.94
4117558--4117625	15	4.5	15	70	22	54	47	0	0	52	1.00
4117600--4117634	13	2.6	13	86	4	52	40	0	2	57	1.14
4117603--4117643	13	2.9	15	85	7	50	39	0	2	58	1.11
4117633--4117685	28	1.9	28	88	3	81	45	0	0	54	0.99
4120162--4120188	14	1.9	14	100	0	54	55	0	0	44	0.99
4120354--4120643	15	18.2	16	67	25	104	53	2	1	42	1.22
4120358--4120618	31	8.6	32	70	20	122	53	2	1	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4120492--4120630	13	11.5	12	68	25	64	53	1	0	43	1.14
4120433--4120676	119	2.1	115	77	11	246	54	2	2	40	1.25
4120691--4120784	19	5.6	18	65	21	60	44	2	0	53	1.12
4120906--4120939	14	2.4	14	86	13	52	38	2	2	55	1.30
4124289--4124340	22	2.3	24	75	18	58	59	1	0	38	1.08
4127656--4127680	2	12.5	2	100	0	50	52	0	0	48	1.00
4127809--4128000	96	2.0	98	90	3	309	29	14	15	40	1.87
4128439--4128636	105	1.9	105	89	2	308	25	10	17	46	1.80
4128823--4129938	553	2.0	552	91	2	1803	35	8	21	34	1.84
4132079--4132125	21	2.2	21	84	0	58	31	10	8	48	1.68
4134578--4134602	7	3.6	7	100	0	50	88	0	0	12	0.53
4136445--4136475	13	2.3	14	94	5	55	51	0	0	48	1.00
4136776--4136837	15	4.6	14	69	18	51	64	0	3	32	1.09
4137244--4137307	28	2.2	29	84	13	80	56	0	0	43	0.99
4139917--4139974	29	2.0	29	100	0	116	31	20	13	34	1.92
4144062--4144120	26	2.3	26	79	5	66	42	3	1	52	1.28
4152073--4152110	19	2.0	19	89	0	58	47	0	0	52	1.00
4152096--4152165	23	3.0	23	75	10	70	45	1	0	52	1.09
4152081--4152160	11	6.7	12	73	18	60	47	1	0	51	1.08
4152148--4152179	16	1.9	17	93	6	57	46	0	0	53	1.00
4152181--4152225	24	1.9	23	86	4	63	51	0	0	48	1.00
4157109--4157141	17	1.9	17	93	0	57	87	3	3	6	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4157257--4157302	24	1.9	24	95	0	83	15	10	43	30	1.81
4157850--4157900	26	1.9	26	84	4	66	39	0	7	52	1.30
4166251--4166282	16	2.0	16	93	0	55	40	0	0	59	0.97
4177205--4177306	42	2.4	42	90	0	150	20	30	4	44	1.73
4177841--4177918	32	2.4	32	81	8	88	26	6	5	61	1.41
4178438--4178535	42	2.3	42	78	0	106	53	16	9	21	1.70
4178606--4178703	42	2.3	42	78	0	106	54	19	9	17	1.69
4185652--4185702	25	2.0	25	100	0	102	15	23	45	15	1.85
4185677--4185886	79	2.6	79	93	0	357	18	24	34	22	1.96
4185781--4186004	118	1.9	118	95	1	405	18	25	33	22	1.96
4185702--4186448	198	3.8	196	77	10	801	18	24	32	23	1.97
4185899--4186164	80	3.3	80	95	0	462	17	25	33	23	1.96
4186058--4186396	117	2.9	117	92	1	572	19	24	32	23	1.97
4186297--4186448	78	1.9	78	85	5	209	21	26	28	23	1.99
4189368--4189421	15	3.8	13	80	20	56	31	1	0	66	1.02
4189366--4189421	29	2.0	28	86	10	78	32	1	0	66	1.03
4190423--4190493	30	2.3	29	77	17	81	40	0	0	59	0.98
4190462--4190510	22	2.3	22	96	3	91	48	0	0	51	1.00
4190731--4190798	24	3.0	24	79	16	81	39	4	0	55	1.20
4194334--4194383	25	2.0	25	88	3	75	32	2	0	66	1.03
4195135--4195172	12	3.4	11	83	16	51	34	0	2	63	1.09
4195442--4195488	24	2.0	24	95	0	85	40	2	2	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4199521--4199551	1	31.0	1	100	0	62	100	0	0	0	0.00
4206600--4206656	26	2.2	26	78	6	62	47	5	3	43	1.43
4213108--4213154	22	2.1	22	92	0	76	19	29	10	40	1.85
4213124--4213188	33	2.0	33	90	6	105	15	27	15	41	1.87
4215887--4215956	30	2.3	30	76	13	72	55	4	2	37	1.34
4222882--4222940	27	2.2	27	81	6	66	42	0	1	55	1.09
4229580--4229654	31	2.5	31	79	16	77	50	1	1	46	1.18
4233506--4233544	18	2.1	18	85	4	51	17	0	15	66	1.25
4233574--4233631	21	2.9	21	69	23	52	43	0	3	53	1.17
4235991--4236033	21	2.1	20	86	4	59	55	2	0	41	1.12
4237520--4237586	30	2.2	30	84	5	82	47	26	0	25	1.52
4247820--4248238	213	2.0	214	87	0	606	31	17	19	31	1.95
4250201--4251220	171	6.0	170	82	4	1192	23	19	11	46	1.82
4250231--4251220	342	2.9	342	86	2	1326	23	19	11	45	1.82
4250882--4250952	34	2.1	34	84	5	90	19	18	9	52	1.73
4252400--4252448	22	2.3	22	80	13	59	18	40	20	20	1.91
4252682--4252725	3	14.3	3	90	4	70	63	2	0	34	1.07
4253021--4253111	20	4.6	20	69	21	66	50	27	0	21	1.49
4253062--4253109	14	3.3	14	75	11	51	54	25	0	20	1.45
4253147--4253172	13	2.0	13	100	0	52	53	30	0	15	1.42
4257812--4257875	30	2.1	30	88	0	92	29	37	25	7	1.84
4258216--4258280	21	3.0	21	82	8	69	61	3	3	32	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4258216--4258271	22	2.6	21	81	13	69	62	3	1	32	1.23
4258047--4258442	207	1.9	205	81	9	473	47	7	13	31	1.71
4268421--4268445	13	1.9	13	100	0	50	84	0	16	0	0.63
4270545--4270593	3	17.0	3	79	8	57	65	4	2	28	1.22
4270597--4270650	19	2.8	18	75	20	56	77	9	0	12	0.98
4270601--4270660	26	2.4	24	82	17	70	80	8	0	11	0.92
4270600--4270656	13	4.4	12	72	14	51	80	7	0	12	0.89
4270600--4270657	7	8.7	7	77	7	50	81	6	0	12	0.88
4271422--4271454	16	2.0	17	88	5	50	6	12	0	81	0.85
4274881--4274920	17	2.4	17	91	4	64	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138