genome.fa.s124.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  106  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16154018--16154070	26	2.0	26	92	0	88	28	28	18	24	1.98
16154361--16154413	26	2.0	26	85	7	72	30	24	18	26	1.98
16156101--16156153	26	2.0	26	88	0	79	28	28	16	26	1.97
16155014--16156194	515	2.3	515	82	4	1346	19	26	30	23	1.98
16156542--16156594	26	2.0	26	88	0	79	28	22	18	30	1.98
16156568--16157067	159	3.2	157	76	5	463	19	27	29	23	1.98
16157043--16157093	26	2.0	26	88	7	77	29	25	13	31	1.94
16158280--16158335	26	2.2	26	87	6	78	30	21	17	30	1.96
16158644--16159019	159	2.4	160	78	7	367	18	27	30	24	1.98
16159641--16160216	158	3.6	157	75	3	467	20	27	28	24	1.99
16161024--16161439	158	2.6	159	79	8	367	18	28	30	23	1.97
16161425--16161477	26	2.0	26	96	0	97	26	28	20	24	1.99
16161611--16161661	26	2.0	26	88	7	77	29	21	17	31	1.96
16161349--16161681	184	1.8	184	88	2	517	20	27	27	24	1.99
16161988--16162040	26	2.0	26	88	0	79	28	26	18	26	1.98
16162014--16162517	158	3.2	159	75	7	452	20	26	29	24	1.99
16168705--16168754	26	2.0	26	88	4	75	26	30	18	26	1.98
16168810--16169233	159	2.7	157	77	6	390	18	29	28	23	1.98
16169206--16169258	26	2.0	26	92	7	90	26	24	20	28	1.99
16169917--16169969	26	2.0	26	85	0	70	28	24	22	24	2.00
16169142--16170286	343	3.3	343	77	4	1110	20	25	29	24	1.99
16169943--16170444	158	3.2	157	76	5	506	20	24	30	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16170418--16170470	26	2.0	26	92	0	88	26	22	18	32	1.97
16170477--16170799	171	1.9	170	81	3	398	18	26	30	23	1.98
16170786--16170837	26	2.0	26	92	0	86	28	26	19	25	1.98
16170950--16171344	159	2.5	159	81	1	459	20	23	30	25	1.99
16171470--16171522	26	2.0	26	96	0	97	26	28	20	24	1.99
16171496--16171997	158	3.2	153	72	9	418	20	25	29	24	1.99
16171971--16172023	26	2.0	26	89	7	81	28	24	18	28	1.98
16172165--16172218	26	2.1	26	89	0	81	29	25	16	27	1.97
16171434--16172723	698	1.8	697	84	2	1755	20	26	29	24	1.99
16172281--16172697	159	2.6	159	79	6	450	17	29	29	23	1.97
16172194--16172695	158	3.2	158	76	7	498	18	27	30	23	1.98
16172669--16172721	26	2.0	26	85	7	72	30	24	16	28	1.97
16173555--16173931	159	2.4	160	78	4	402	18	27	30	23	1.97
16174129--16174568	159	2.8	158	78	7	426	19	27	29	23	1.98
16174542--16174594	26	2.0	26	85	7	72	24	28	20	26	1.99
16175360--16175409	26	1.9	26	88	8	75	30	20	20	30	1.97
16175479--16175511	11	3.0	11	90	0	57	24	36	30	9	1.86
16176113--16176617	158	3.2	158	77	7	506	21	26	29	23	1.99
16177378--16177816	159	2.8	159	82	4	530	18	29	30	21	1.97
16177789--16177841	26	2.0	26	92	7	90	26	24	20	28	1.99
16181523--16181574	26	2.0	26	92	0	86	32	25	17	25	1.97
16181694--16182049	158	2.2	158	79	6	371	19	25	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16182167--16182191	13	1.9	13	100	0	50	8	56	20	16	1.65
16182231--16182283	26	2.0	26	92	0	88	28	28	18	24	1.98
16183297--16183349	26	2.0	26	88	0	79	28	26	18	26	1.98
16183387--16183756	159	2.3	158	81	4	422	17	26	32	24	1.97
16184150--16184202	26	2.0	26	89	7	81	28	26	18	26	1.98
16184176--16184833	158	4.2	157	74	8	507	21	26	28	22	1.99
16184807--16184859	26	2.0	26	92	7	90	26	22	20	30	1.98
16185160--16185209	26	1.9	26	92	8	84	24	24	22	30	1.99
16185509--16185561	26	2.0	26	85	0	70	28	24	18	28	1.98
16186004--16186372	171	2.2	171	79	5	397	21	27	28	21	1.99
16186436--16187132	159	4.3	157	75	8	596	20	27	29	22	1.99
16187124--16187150	13	2.1	13	100	0	54	14	48	14	22	1.81
16187687--16187739	26	2.0	26	92	0	88	28	20	20	30	1.98
16186787--16187915	512	2.2	503	78	7	1150	19	27	29	24	1.98
16188103--16189153	512	2.1	510	81	3	1229	20	24	30	24	1.99
16189247--16189298	26	2.0	26	92	0	86	32	28	13	25	1.93
16189222--16189582	197	1.8	197	86	2	519	21	27	26	24	1.99
16189853--16189905	26	2.0	26	92	7	90	30	22	16	30	1.96
16189743--16190122	197	1.9	196	84	2	503	22	24	27	25	2.00
16191180--16191641	159	2.9	158	79	3	489	17	26	32	23	1.97
16191141--16191640	158	3.2	156	76	5	502	19	26	31	23	1.98
16191616--16191666	26	2.0	26	88	7	77	25	23	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16191981--16192032	26	2.0	25	88	3	77	26	28	21	23	1.99
16191512--16192229	353	2.0	360	80	6	814	20	27	29	22	1.99
16192843--16193381	158	3.4	158	79	4	566	18	28	30	22	1.97
16193354--16193406	26	2.0	26	92	7	90	26	20	20	32	1.98
16193646--16193670	13	1.9	13	100	0	50	4	48	24	24	1.68
16194061--16194113	26	2.0	26	92	0	88	26	26	20	26	1.99
16193659--16194311	351	1.8	353	83	3	850	20	26	29	23	1.99
16194562--16194640	26	3.0	26	87	3	106	27	24	16	31	1.96
16195767--16196341	158	3.6	159	79	4	556	19	27	29	23	1.98
16195753--16196342	317	1.9	318	80	3	704	19	27	30	23	1.98
16196315--16196367	26	2.0	26	92	7	90	26	24	20	28	1.99
16196696--16196748	26	2.0	26	88	0	79	28	26	18	26	1.98
16196722--16197101	158	2.4	157	74	6	354	22	26	29	21	1.99
16197709--16197759	26	2.0	26	92	0	84	25	25	17	31	1.97
16198401--16199138	158	4.7	158	71	7	494	21	25	29	23	1.99
16198396--16199249	317	2.7	317	79	4	776	20	25	28	24	1.99
16199222--16199274	26	2.0	26	86	13	74	30	24	16	28	1.97
16199753--16199860	26	4.2	26	90	2	173	27	22	20	29	1.98
16200562--16200614	26	2.0	26	88	0	79	26	24	20	28	1.99
16201246--16201298	26	2.0	26	85	7	72	26	24	18	30	1.98
16201746--16201798	26	2.0	26	89	7	81	26	22	20	30	1.98
16201588--16202199	184	3.3	186	79	7	646	20	24	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16201691--16202349	196	3.4	190	80	6	609	20	24	28	26	1.99
16202126--16202178	26	2.0	26	89	7	81	26	22	20	30	1.98
16202508--16202558	26	2.0	26	92	0	84	31	25	15	27	1.96
16202664--16203032	158	2.3	158	79	4	366	19	25	30	24	1.98
16203006--16203058	26	2.0	26	89	7	81	28	24	18	28	1.98
16203202--16203254	26	2.0	26	89	7	81	30	28	16	24	1.97
16205484--16205536	26	2.0	26	88	0	79	26	22	18	32	1.97
16206112--16206480	158	2.3	157	78	5	359	18	27	30	23	1.98
16206890--16206942	26	2.0	26	88	0	79	30	26	18	24	1.98
16207550--16207602	26	2.0	26	88	0	79	26	26	18	28	1.98
16207893--16207945	26	2.0	26	89	7	81	28	24	18	28	1.98
16210737--16210786	26	1.9	26	88	8	75	26	24	20	30	1.98
16210763--16211160	184	2.2	184	84	2	505	21	27	26	23	1.99
16211287--16211339	26	2.0	26	92	7	90	28	26	20	24	1.99
16211908--16212569	159	4.2	157	77	7	586	19	25	30	24	1.98
16212655--16212705	26	2.0	26	92	0	84	23	27	19	29	1.98
16212818--16213164	159	2.2	159	82	3	412	17	26	31	24	1.97
16214006--16214058	26	2.0	26	85	0	70	30	28	15	26	1.96
16214032--16214694	159	4.2	158	75	7	527	19	26	29	24	1.99
16214780--16214830	26	2.0	26	92	0	84	23	27	19	29	1.98
16214943--16215299	159	2.2	159	83	3	425	17	26	31	24	1.97
16215432--16215485	26	2.1	26	85	0	72	22	24	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16216129--16216184	26	2.2	26	87	6	78	30	25	17	26	1.97
16216633--16216688	26	2.2	26	86	0	76	32	25	12	30	1.92
16217003--16217055	26	2.0	26	92	0	88	26	26	20	26	1.99
16217068--16217531	159	2.9	157	76	6	411	18	25	32	23	1.97
16218232--16218310	26	3.0	26	90	0	122	29	27	17	25	1.98
16218442--16218494	26	2.0	26	85	7	72	30	20	18	30	1.97
16217353--16220122	928	3.0	927	92	1	4433	26	23	23	26	2.00
16219160--16219238	26	3.0	26	90	0	122	29	27	17	25	1.98
16219369--16219422	26	2.0	27	86	10	76	31	22	18	27	1.97
16220581--16220633	26	2.0	26	92	7	90	26	24	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138