genome.fa.s124.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  37  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8499415--8499475	29	2.1	29	82	8	72	39	4	13	42	1.65
8501500--8501565	33	2.0	33	88	5	98	19	19	10	50	1.77
8506693--8506758	33	2.0	33	94	5	116	50	7	21	21	1.73
8508769--8508833	28	2.3	28	81	5	78	40	16	4	38	1.70
8512188--8512217	3	10.0	3	100	0	60	66	0	0	33	0.92
8512554--8512585	14	2.3	14	94	0	55	78	12	6	3	1.06
8513644--8513757	15	7.5	15	82	9	124	48	35	0	15	1.46
8513635--8513757	30	4.0	31	85	6	153	47	34	0	17	1.53
8513705--8513813	51	2.1	50	85	6	139	49	37	0	12	1.41
8513750--8513811	14	4.2	15	80	13	58	53	35	0	11	1.37
8513673--8513800	16	8.0	16	67	25	58	48	37	0	14	1.44
8514220--8514250	16	1.9	16	93	0	53	45	35	0	19	1.51
8515993--8516034	20	2.0	20	86	9	57	61	2	4	30	1.29
8519544--8519602	19	3.2	18	78	7	64	84	1	5	8	0.82
8519544--8519574	1	31.0	1	93	0	53	96	0	0	3	0.21
8521519--8521581	22	2.9	22	76	7	74	31	28	17	22	1.96
8521564--8521799	110	2.1	111	84	3	307	23	21	18	36	1.95
8521754--8521822	23	3.0	23	85	8	95	24	23	23	28	1.99
8521865--8522478	110	5.6	109	80	1	636	22	20	17	39	1.92
8521513--8522091	288	2.0	286	85	1	782	23	20	19	36	1.95
8522268--8522311	22	2.0	22	86	8	63	29	22	15	31	1.95
8521930--8522475	219	2.5	219	85	2	711	22	20	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8521862--8522478	329	1.9	330	83	2	801	22	19	17	39	1.92
8522882--8522930	24	2.0	24	92	4	80	73	0	20	6	1.04
8523825--8523856	14	2.3	14	94	0	55	18	9	0	71	1.12
8524274--8524371	16	6.2	16	73	17	89	50	27	1	21	1.56
8524272--8524368	7	12.1	8	67	23	53	47	28	1	22	1.58
8524272--8524368	24	4.0	24	67	19	69	47	28	1	22	1.58
8524275--8524372	31	3.1	30	76	13	108	48	28	1	21	1.56
8524271--8524365	48	2.0	48	85	4	129	48	27	1	23	1.58
8525992--8526047	28	2.0	28	92	0	94	48	17	10	23	1.79
8531074--8531132	20	3.0	20	84	0	82	42	1	3	52	1.28
8532921--8532960	20	1.9	21	85	10	55	52	0	0	47	1.00
8538277--8538369	8	12.4	8	68	17	65	16	2	30	51	1.56
8538275--8538353	29	2.7	29	94	0	140	16	1	32	49	1.54
8538297--8538414	45	2.7	43	75	7	112	19	0	27	51	1.52
8538284--8538396	14	7.8	14	70	7	73	16	1	26	54	1.52
8538403--8538476	21	3.5	21	73	14	62	17	0	28	54	1.44
8538453--8538534	14	5.7	14	70	16	60	23	0	24	52	1.47
8538449--8538573	30	4.2	30	79	8	123	22	0	28	49	1.50
8539790--8539842	23	2.2	25	83	6	65	16	13	41	28	1.86
8539805--8539853	27	1.9	24	84	12	62	18	14	34	32	1.91
8540374--8540416	21	2.0	21	90	0	68	58	0	0	41	0.98
8540367--8540418	21	2.8	18	78	18	61	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8540641--8540680	15	2.7	15	88	0	53	55	25	0	20	1.44
8540584--8540672	22	4.2	21	68	18	60	48	28	2	21	1.62
8542238--8542277	21	2.0	21	85	5	55	25	2	5	67	1.23
8543363--8543401	18	2.2	18	90	0	60	12	2	7	76	1.09
8543641--8544010	47	7.6	49	75	6	290	38	21	11	28	1.88
8543635--8543876	99	2.4	98	82	4	263	40	21	11	26	1.87
8543615--8543924	148	2.1	148	87	3	435	39	20	11	28	1.87
8543983--8544038	28	2.0	28	89	0	85	39	32	12	16	1.85
8543936--8544085	75	2.0	75	88	0	219	39	24	10	26	1.87
8543889--8544134	122	2.0	123	82	7	295	37	24	11	26	1.89
8544013--8544239	47	4.8	49	85	7	299	37	24	11	26	1.90
8544013--8544241	96	2.4	94	89	5	336	36	24	11	27	1.90
8554746--8554800	21	2.7	20	83	8	58	7	0	20	72	1.07
8556384--8556423	21	2.0	21	90	5	64	25	0	5	70	1.08
8557535--8557577	20	2.1	21	83	8	54	4	6	6	81	0.98
8557553--8557604	11	4.5	11	82	15	61	9	1	7	80	0.97
8558523--8559207	346	2.0	346	90	3	1076	42	14	8	34	1.77
8561728--8561770	15	2.9	15	85	0	50	4	32	0	62	1.15
8562238--8562786	270	2.0	274	88	2	829	44	8	5	41	1.59
8562525--8563845	658	2.0	659	89	1	2053	39	8	6	45	1.61
8565717--8565766	22	2.3	22	82	0	55	52	0	0	48	1.00
8566223--8566286	3	21.0	3	93	6	103	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8566492--8566537	18	2.6	18	80	12	60	43	0	6	50	1.28
8566491--8566547	27	2.2	26	83	3	69	42	0	7	50	1.29
8566948--8566990	21	2.0	21	95	0	77	27	2	20	48	1.62
8569764--8569829	29	2.3	29	82	7	82	42	15	4	37	1.67
8571906--8571948	22	1.9	23	85	4	61	48	9	0	41	1.35
8572983--8573036	22	2.4	22	79	11	56	11	3	9	75	1.15
8572983--8573055	23	3.2	22	78	21	64	10	2	10	75	1.15
8573444--8573535	34	2.7	34	89	0	139	45	15	22	16	1.84
8573499--8575011	69	21.6	69	82	6	1512	41	14	23	19	1.89
8573513--8575011	142	10.7	142	82	6	1558	41	15	23	19	1.89
8575010--8575060	23	2.2	24	82	13	70	29	19	21	29	1.98
8575862--8575903	21	2.0	21	90	0	66	28	0	4	66	1.12
8577182--8577215	16	2.1	16	88	0	50	2	2	5	88	0.70
8577749--8577777	10	2.9	10	100	0	58	0	6	0	93	0.36
8580785--8581311	69	7.5	69	79	8	492	19	22	14	43	1.88
8580854--8581311	142	3.2	142	82	5	536	19	21	14	43	1.87
8581250--8581341	34	2.7	34	91	0	148	16	21	15	46	1.83
8581730--8581779	12	4.4	11	76	18	57	76	12	0	12	1.04
8581730--8581798	23	3.0	23	80	14	65	76	11	1	10	1.08
8585325--8585389	33	2.0	33	91	8	107	21	18	7	52	1.70
8586307--8586347	21	2.0	21	95	0	73	48	19	2	29	1.61
8586779--8586815	19	1.9	19	88	0	56	48	10	0	40	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8586785--8586823	19	2.1	19	85	0	51	48	12	2	35	1.55
8587033--8587083	3	17.0	3	100	0	102	33	0	0	66	0.92
8589725--8589753	10	2.9	10	100	0	58	68	0	10	20	1.18
8589472--8590783	650	2.0	652	88	3	1960	46	6	8	38	1.61
8591540--8591584	15	3.0	15	86	0	63	64	0	31	4	1.13
8592156--8592188	5	6.6	5	86	13	50	0	33	3	63	1.10
8594101--8594788	347	2.0	347	89	2	1071	33	9	14	42	1.78
8595526--8595574	21	2.3	21	92	0	89	51	18	0	30	1.47
8596915--8596954	20	2.0	21	90	5	64	70	5	0	25	1.08
8604552--8604598	15	3.1	15	84	0	58	63	0	31	4	1.13
8607113--8607798	346	2.0	346	89	4	1053	33	8	14	42	1.77
8608746--8608780	14	2.4	15	90	4	54	88	5	5	0	0.63
8608713--8608766	24	2.2	24	76	0	63	81	7	1	9	0.94
8609727--8609779	16	3.5	15	77	12	56	28	1	0	69	0.99
8609849--8609888	20	2.0	21	90	5	64	70	5	0	25	1.08
8617004--8617236	49	4.8	49	89	1	342	27	13	24	33	1.93
8617210--8617265	28	2.0	28	92	0	94	16	14	35	33	1.88
8617113--8617359	122	2.0	125	84	3	331	26	13	25	35	1.93
8617238--8617918	50	13.8	49	77	6	594	28	12	20	38	1.89
8617273--8617918	202	3.2	199	85	5	806	28	12	20	38	1.88
8617324--8617959	102	6.3	101	79	7	570	28	12	20	38	1.89
8618155--8618214	26	2.4	25	82	2	66	76	10	3	10	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8619219--8619245	10	2.7	10	100	0	54	14	0	7	77	0.97
8619338--8619377	20	2.0	21	85	5	55	67	5	2	25	1.23
8619892--8619955	18	3.9	18	67	23	59	26	4	3	65	1.27
8619894--8619952	15	3.9	16	73	10	61	27	5	3	64	1.30
8619875--8619953	30	2.6	30	93	4	131	29	3	3	63	1.29
8620293--8620377	24	3.4	25	78	10	77	28	38	12	20	1.89
8621149--8621196	3	16.0	3	82	8	53	64	4	2	29	1.23
8621560--8621760	30	6.9	30	76	11	125	51	27	0	20	1.48
8621567--8621716	28	5.2	28	76	10	133	50	29	0	20	1.49
8621657--8621856	14	13.8	14	68	11	84	53	27	1	18	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138