genome.fa.s124.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  95  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15292504--15292958	159	2.9	159	84	1	545	24	30	26	18	1.98
15293846--15293898	26	2.0	26	92	0	88	26	20	26	26	1.99
15294200--15294252	26	2.0	26	89	7	81	28	18	22	30	1.98
15295614--15295666	26	2.0	26	92	7	90	28	18	22	30	1.98
15295459--15295822	185	2.0	180	80	4	399	25	28	25	20	1.99
15297134--15297186	26	2.0	26	88	0	79	24	13	28	33	1.93
15296826--15298139	684	1.9	684	84	3	1777	23	28	27	20	1.99
15298198--15298250	26	2.0	26	92	7	90	28	20	24	26	1.99
15298696--15298748	26	2.0	26	85	0	70	26	15	24	33	1.95
15299076--15299128	26	2.0	26	92	7	90	28	20	24	26	1.99
15299101--15299532	159	2.7	158	76	4	431	24	30	27	18	1.98
15299577--15299629	26	2.0	26	85	0	70	26	15	24	33	1.95
15299963--15300015	26	2.0	26	92	7	90	28	20	24	26	1.99
15297497--15300536	878	3.4	882	96	1	5402	23	29	26	20	1.99
15302201--15302253	26	2.0	26	92	0	88	28	18	24	28	1.98
15302543--15302608	26	2.5	26	95	0	123	28	13	27	30	1.94
15302958--15303008	26	2.0	26	88	7	77	31	15	23	29	1.95
15303139--15303744	159	3.8	159	85	3	747	25	30	27	17	1.97
15303811--15304313	158	3.2	158	78	5	550	22	31	27	18	1.97
15304665--15304717	26	2.0	26	92	0	88	22	20	28	28	1.99
15305398--15305895	158	3.1	158	74	6	384	23	28	27	20	1.99
15306083--15306465	197	1.9	196	80	5	432	22	31	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15306439--15306781	159	2.2	157	84	1	434	23	29	27	20	1.98
15306755--15306807	26	2.0	26	85	0	70	26	20	28	24	1.99
15306949--15307001	26	2.0	26	89	7	81	28	18	24	28	1.98
15306976--15307583	170	3.8	158	74	8	438	23	29	27	19	1.98
15309170--15309221	25	2.0	25	85	3	68	25	19	28	26	1.98
15309884--15309936	26	2.0	26	85	7	72	30	18	22	28	1.98
15309910--15310412	159	3.2	158	76	5	410	21	31	28	18	1.97
15310386--15310436	26	2.0	26	92	0	84	25	17	27	29	1.98
15310596--15310882	159	1.8	158	80	3	353	24	30	27	18	1.97
15311622--15311674	26	2.0	26	85	7	72	30	18	22	28	1.98
15311647--15312147	159	3.2	155	74	10	444	21	30	28	18	1.97
15312120--15312170	26	2.0	26	96	0	93	25	19	27	27	1.99
15313141--15313193	26	2.0	26	89	7	81	30	20	22	26	1.98
15313644--15313696	26	2.0	26	92	0	88	24	18	28	28	1.98
15314402--15314904	158	3.2	158	77	6	491	24	31	26	18	1.97
15314878--15314930	26	2.0	26	92	0	88	24	18	28	28	1.98
15315283--15315699	159	2.6	157	74	4	374	23	28	28	19	1.98
15315759--15315811	26	2.0	26	88	0	79	26	15	26	32	1.95
15317560--15317612	26	2.0	26	89	7	81	28	18	24	28	1.98
15317362--15317721	197	1.8	197	84	2	499	24	27	25	22	2.00
15318625--15318677	26	2.0	26	89	7	81	28	18	24	28	1.98
15319026--15319513	159	3.1	158	75	8	373	23	28	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15319494--15319546	26	2.0	26	85	0	70	24	18	28	28	1.98
15320716--15320768	26	2.0	26	86	13	74	30	16	22	30	1.96
15321413--15321465	26	2.0	26	88	0	79	24	18	30	26	1.98
15326760--15326812	26	2.0	26	92	0	88	24	20	26	28	1.99
15327140--15327190	26	2.0	26	92	7	86	31	15	25	27	1.96
15326970--15327788	353	2.3	353	79	3	896	26	28	24	21	1.99
15327517--15328020	159	3.2	158	77	4	379	24	29	25	20	1.99
15327994--15328046	26	2.0	26	92	7	90	28	20	22	28	1.99
15328203--15328648	198	2.3	197	86	3	594	24	30	24	20	1.99
15328573--15328625	26	2.0	26	89	7	81	28	20	22	28	1.99
15329952--15330004	26	2.0	26	88	0	79	26	15	26	32	1.95
15330295--15330347	26	2.0	26	89	7	81	26	15	24	33	1.95
15329794--15330733	344	2.7	343	91	1	1499	23	28	27	20	1.99
15330639--15330691	26	2.0	26	92	0	88	24	15	28	32	1.95
15330814--15331455	158	4.1	159	75	6	543	23	30	26	20	1.99
15330845--15331453	317	1.9	317	81	7	736	23	30	26	19	1.98
15332100--15332150	26	2.0	26	92	7	86	29	19	23	27	1.98
15332188--15332241	26	2.0	27	92	3	92	35	27	31	5	1.80
15332260--15332316	26	2.2	26	84	6	71	29	14	22	33	1.93
15332466--15332518	26	2.0	26	92	7	90	30	20	22	26	1.98
15332762--15332813	26	2.0	26	88	0	77	26	17	26	28	1.97
15333643--15333695	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15334019--15334071	26	2.0	26	89	7	81	28	18	24	28	1.98
15334304--15334358	26	2.1	26	86	0	74	27	18	25	29	1.98
15334515--15334567	26	2.0	26	92	7	90	32	20	20	26	1.98
15334857--15335338	185	2.6	184	80	4	551	26	28	24	20	1.99
15335480--15335532	26	2.0	26	88	0	79	26	18	26	28	1.98
15336213--15336262	25	2.0	26	88	11	77	30	12	26	32	1.92
15336238--15336672	159	2.8	157	80	4	448	22	28	27	20	1.99
15338316--15338385	26	2.7	26	95	0	122	31	17	24	27	1.97
15338882--15338951	26	2.7	26	97	0	131	31	20	24	24	1.98
15339096--15339147	26	2.0	26	92	7	88	28	21	23	26	1.99
15343322--15343374	26	2.0	26	86	13	74	30	16	22	30	1.96
15343824--15343874	26	2.0	26	88	0	75	27	17	27	27	1.98
15344541--15344593	26	2.0	26	89	7	81	28	20	24	26	1.99
15345024--15345710	159	4.2	166	74	12	549	22	29	27	20	1.98
15345684--15345736	26	2.0	26	89	7	81	28	20	22	28	1.99
15345719--15346013	154	1.9	154	82	6	375	22	29	28	19	1.98
15344842--15346135	668	1.9	661	79	8	1402	23	29	27	19	1.98
15346181--15346233	26	2.0	26	92	0	88	24	18	28	28	1.98
15347239--15347291	26	2.0	26	92	7	90	26	20	26	26	1.99
15347435--15347487	26	2.0	26	89	7	81	30	18	22	28	1.98
15347461--15347963	159	3.2	158	77	4	530	22	31	27	19	1.97
15348660--15348712	26	2.0	26	92	7	90	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15349002--15349054	26	2.0	26	88	0	79	28	20	26	24	1.99
15349199--15349251	26	2.0	26	82	13	65	32	20	20	26	1.98
15349871--15349923	26	2.0	26	96	0	97	26	18	26	28	1.98
15350066--15350117	26	2.0	26	92	7	88	30	19	23	26	1.98
15350419--15350470	26	2.0	26	92	7	88	28	19	25	26	1.98
15350813--15350884	26	2.8	26	95	4	128	33	19	20	26	1.97
15351285--15351337	26	2.0	26	85	0	70	28	18	26	26	1.98
15352007--15352059	26	2.0	26	92	0	88	28	18	22	30	1.98
15352032--15352319	158	1.8	158	80	5	350	23	29	28	19	1.98
15352190--15352735	184	3.0	183	75	8	532	22	27	27	22	1.99
15353038--15353092	26	2.1	27	90	10	87	30	20	27	21	1.98
15352836--15353514	355	1.9	356	84	2	898	23	29	26	19	1.98
15354101--15354153	26	2.0	26	85	0	70	32	22	16	28	1.96
15354445--15354497	26	2.0	26	85	0	70	24	16	26	32	1.97
15354654--15354706	26	2.0	26	89	7	81	30	20	22	26	1.98
15355154--15355206	26	2.0	26	88	0	79	24	16	28	30	1.97
15355522--15355574	26	2.0	26	92	0	88	24	18	28	28	1.98
15354960--15355853	368	2.4	370	81	4	1011	22	28	27	21	1.99
15356359--15356411	26	2.0	26	89	7	81	26	20	24	28	1.99
15357071--15357123	26	2.0	26	89	7	81	30	20	22	26	1.98
15357096--15357591	159	3.1	159	78	4	486	22	30	28	18	1.98
15358293--15358345	26	2.0	26	89	7	81	30	18	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15357860--15358529	355	1.9	354	84	1	912	24	27	25	22	2.00
15358794--15358871	26	3.0	26	88	5	106	26	17	25	29	1.98
15359523--15359575	26	2.0	26	88	0	79	24	13	28	33	1.93
15359903--15359955	26	2.0	26	86	13	74	28	16	24	30	1.97
15359928--15360430	158	3.2	158	78	6	462	22	30	27	19	1.98
15360404--15360456	26	2.0	26	92	0	88	26	22	24	26	2.00
15367019--15367071	26	2.0	26	85	7	72	28	18	26	26	1.98
15368375--15368427	26	2.0	26	96	0	97	24	20	28	26	1.99
15369651--15370152	159	3.2	156	77	7	431	23	29	27	19	1.98
15370126--15370178	26	2.0	26	85	0	70	24	22	26	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138