genome.fa.s124.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  50  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10636323--10636355	14	2.3	15	89	5	50	54	3	0	42	1.15
10638345--10638412	35	1.9	35	82	5	84	63	0	8	27	1.24
10638505--10638598	40	2.4	39	76	15	95	47	23	7	21	1.75
10638569--10638609	19	2.2	19	86	8	57	60	21	4	12	1.50
10638505--10638599	39	2.4	40	78	13	99	47	24	7	21	1.76
10638780--10638829	6	8.7	6	80	6	59	64	0	2	34	1.05
10641662--10641712	21	2.4	21	90	0	75	25	11	27	35	1.91
10650195--10650343	36	4.2	36	76	9	101	24	24	6	44	1.78
10650223--10650343	36	3.4	36	80	5	111	24	24	4	45	1.73
10651176--10651276	37	2.7	37	89	6	143	66	4	0	28	1.12
10653106--10653149	16	2.7	16	89	3	61	75	2	2	20	1.03
10653304--10653366	20	3.2	20	71	8	65	42	23	7	25	1.81
10653324--10653401	19	3.9	19	75	11	68	48	26	6	17	1.71
10653297--10653385	40	2.2	40	90	5	137	46	22	7	23	1.78
10655725--10655753	13	2.1	14	93	6	51	34	0	20	44	1.52
10656196--10656243	24	2.0	24	84	15	64	37	0	6	56	1.25
10656699--10656750	21	2.4	22	90	9	81	53	1	0	44	1.11
10656741--10656770	9	3.4	9	95	4	53	60	0	0	40	0.97
10657164--10657211	22	2.3	20	83	13	62	27	0	18	54	1.44
10657167--10657214	21	2.2	22	88	3	71	25	0	18	56	1.42
10657208--10657337	61	2.1	61	81	9	149	38	6	6	48	1.55
10657456--10657520	28	2.3	28	83	0	85	50	6	6	36	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10658363--10658396	18	1.9	17	94	5	59	52	8	26	11	1.67
10659141--10659550	60	6.9	59	78	10	340	50	5	10	33	1.60
10659141--10659550	119	3.4	117	75	13	363	50	5	10	33	1.60
10659210--10659549	121	2.8	119	80	8	359	50	5	11	33	1.60
10661170--10661204	1	35.0	1	100	0	70	100	0	0	0	0.00
10661859--10661921	26	2.4	27	89	5	85	36	11	11	41	1.76
10661866--10661921	26	2.2	26	93	0	94	37	10	8	42	1.71
10662553--10662591	13	2.9	14	85	11	55	79	0	10	10	0.94
10672658--10672701	18	2.4	18	82	10	54	27	4	4	63	1.33
10673569--10673603	6	5.8	6	86	0	52	85	14	0	0	0.59
10673568--10673605	12	3.2	12	88	0	58	86	13	0	0	0.56
10673568--10673604	19	1.9	19	88	0	56	86	13	0	0	0.57
10674863--10674887	3	8.3	3	100	0	50	68	0	0	32	0.90
10681556--10681597	10	3.8	11	84	9	59	76	0	16	7	1.00
10681555--10681607	22	2.4	22	84	12	65	79	0	15	5	0.91
10683112--10683175	25	2.6	25	80	7	69	35	20	10	32	1.87
10683747--10684209	88	5.2	88	78	3	392	21	18	18	41	1.91
10683786--10684104	177	1.8	177	86	0	467	21	18	18	41	1.91
10684181--10684245	23	2.9	23	81	2	60	27	20	15	36	1.92
10684371--10684421	23	2.2	23	86	6	68	29	15	13	41	1.86
10685011--10685053	3	14.3	3	100	0	86	65	0	0	34	0.93
10686334--10686368	18	1.9	18	88	0	52	62	2	2	31	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10688203--10688307	19	5.2	20	77	8	106	33	5	12	48	1.64
10692848--10692890	22	1.9	23	85	4	61	79	6	9	4	1.06
10692848--10692898	22	2.3	22	82	3	57	80	5	9	3	1.01
10701208--10701242	17	2.1	17	89	5	54	22	17	20	40	1.92
10701335--10701371	10	3.9	10	86	13	51	35	10	8	45	1.69
10701336--10701473	18	8.1	18	74	15	96	36	13	8	41	1.76
10701354--10701460	36	2.9	36	76	8	108	36	13	7	42	1.72
10701995--10702058	6	10.8	6	77	3	67	26	6	3	64	1.33
10702003--10702057	18	3.2	17	85	10	76	25	7	3	63	1.37
10702075--10702120	18	2.5	17	86	13	65	69	0	8	21	1.15
10703652--10703676	13	1.9	13	100	0	50	28	0	0	72	0.86
10704461--10704519	22	2.9	20	82	12	59	57	0	18	23	1.40
10707320--10707380	21	3.0	21	95	2	106	32	4	9	52	1.56
10707455--10707513	8	7.4	8	92	0	82	32	11	15	40	1.83
10707455--10707513	16	3.7	16	93	0	91	32	11	15	40	1.83
10707463--10707513	24	2.1	24	96	0	93	31	11	17	39	1.86
10712432--10712457	13	2.0	13	100	0	52	38	7	15	38	1.76
10712835--10712876	18	2.2	20	83	8	52	69	2	2	26	1.13
10714176--10714229	27	1.9	29	85	7	76	59	0	0	40	0.98
10714210--10714254	17	2.7	18	77	22	53	55	0	0	44	0.99
10714229--10714306	24	3.2	23	75	13	75	48	2	1	47	1.23
10714645--10714692	21	2.2	23	81	11	64	45	2	0	52	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10714648--10714699	22	2.4	22	87	3	70	48	1	0	50	1.12
10714565--10714684	48	2.5	47	74	12	120	46	3	3	46	1.35
10714681--10714750	19	3.6	19	74	12	63	41	1	0	57	1.08
10716252--10716315	33	1.9	33	93	0	110	62	3	3	31	1.26
10718701--10718731	2	15.5	2	100	0	62	51	0	48	0	1.00
10720876--10720922	17	2.8	17	77	6	51	63	8	6	21	1.44
10721745--10721781	15	2.5	15	91	4	58	40	0	0	59	0.97
10721800--10721985	59	3.1	59	61	22	134	41	15	2	40	1.61
10723970--10724016	18	2.5	19	75	3	51	17	0	36	46	1.48
10724066--10724134	26	2.6	26	84	6	77	23	4	27	44	1.72
10724064--10724168	13	7.9	13	71	12	61	20	3	32	43	1.69
10724159--10724209	26	2.0	26	92	0	84	13	1	33	50	1.53
10726123--10726203	30	2.7	31	74	16	80	30	9	12	46	1.74
10726883--10726940	30	1.9	30	85	0	80	36	12	15	36	1.85
10726911--10727006	39	2.4	39	86	5	122	44	7	12	35	1.70
10729022--10729082	33	1.9	31	83	6	77	6	22	0	70	1.10
10729580--10729628	13	3.5	14	83	13	57	12	8	0	79	0.93
10729557--10729637	14	5.8	13	73	18	56	9	11	0	79	0.95
10729558--10729641	10	8.7	9	74	19	55	8	11	0	79	0.92
10729557--10729637	29	2.8	28	80	12	92	9	11	0	79	0.95
10732416--10732444	13	2.1	14	93	6	51	0	3	6	89	0.57
10732466--10732502	19	1.9	19	94	0	65	51	2	0	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10732465--10732499	17	2.1	17	88	0	52	51	2	0	45	1.16
10733250--10733308	27	2.1	29	84	9	77	22	8	1	67	1.26
10734154--10734186	14	2.3	15	94	5	59	57	3	12	27	1.49
10734289--10734428	13	10.4	13	71	15	88	18	2	32	45	1.64
10734343--10734421	6	12.1	7	76	10	71	18	1	34	45	1.58
10734343--10734437	20	4.9	21	76	12	87	21	1	33	44	1.59
10734475--10734617	50	2.9	50	81	4	164	44	9	14	32	1.77
10736449--10736505	24	2.3	25	82	8	64	52	14	1	31	1.51
10736554--10736587	17	1.9	18	88	5	52	47	11	5	35	1.65
10736806--10737255	20	22.6	20	69	17	210	52	12	5	29	1.61
10736805--10737213	41	9.8	41	81	9	434	52	12	5	29	1.62
10736893--10736957	31	2.1	31	82	5	78	56	10	4	27	1.53
10736948--10737213	121	2.2	122	89	4	401	52	12	4	30	1.60
10737048--10737255	62	3.4	62	74	13	200	54	12	4	27	1.57
10737266--10737308	3	14.0	3	95	4	77	65	0	0	34	0.93
10737323--10737415	20	4.6	20	83	1	96	52	9	6	31	1.59
10737337--10737415	41	2.0	41	84	2	106	50	11	6	31	1.63
10737421--10737465	16	2.8	16	79	0	54	55	6	6	31	1.52
10737403--10737465	32	1.9	33	87	3	92	52	7	6	33	1.56
10737334--10737496	20	8.6	20	70	14	80	50	10	7	31	1.64
10738061--10738102	18	2.3	18	88	8	59	14	7	0	78	0.95
10738440--10738636	43	4.7	42	77	14	185	39	19	13	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10738476--10738547	37	1.9	37	91	5	119	40	22	15	22	1.91
10738440--10738636	80	2.4	83	83	6	240	39	19	13	27	1.90
10738453--10738688	123	1.9	121	82	5	296	41	18	12	27	1.86
10738973--10738998	13	2.0	13	100	0	52	46	15	15	23	1.83
10746853--10746899	17	2.5	19	80	16	62	59	8	4	27	1.45
10747009--10747045	19	1.9	19	89	10	58	54	8	5	32	1.53
10747071--10747124	19	2.9	19	83	13	76	55	11	5	27	1.57
10747102--10747170	28	2.7	24	73	16	75	53	13	2	30	1.54
10747010--10747140	60	2.2	59	81	9	149	52	10	3	32	1.54
10747172--10747449	41	6.8	41	80	4	208	52	11	7	29	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138