genome.fa.s124.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  51  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10747219--10747486	102	2.6	102	81	5	292	54	10	5	29	1.59
10747263--10747486	61	3.7	60	81	6	261	54	11	4	29	1.55
10747265--10747490	123	1.8	124	82	2	294	54	11	4	29	1.55
10747173--10747486	143	2.2	143	79	5	330	53	11	6	28	1.62
10747265--10747486	41	5.4	41	79	11	161	54	11	4	29	1.55
10747535--10747627	20	4.6	20	80	1	96	51	11	5	31	1.61
10747620--10747708	20	4.8	20	73	18	77	50	6	6	35	1.55
10747616--10747677	32	1.9	33	86	3	90	54	4	4	35	1.43
10747616--10747722	52	2.1	50	81	8	128	52	7	6	33	1.55
10750171--10750209	19	2.0	19	90	5	60	64	2	7	25	1.33
10751886--10751983	31	3.2	30	81	4	106	36	14	5	43	1.67
10752015--10752080	30	2.2	30	86	0	87	48	6	10	34	1.62
10754171--10754202	16	2.0	16	93	0	55	37	15	9	37	1.80
10754380--10754410	2	15.5	2	100	0	62	51	0	0	48	1.00
10759405--10759449	21	2.1	21	95	0	81	46	6	33	13	1.69
10759979--10760041	23	2.9	23	77	9	71	34	14	7	42	1.75
10761321--10761390	30	2.3	31	82	2	88	25	20	4	50	1.66
10762647--10762690	13	3.2	13	75	12	52	68	0	4	27	1.09
10762832--10762889	30	2.0	30	86	3	82	56	3	5	34	1.38
10763825--10763866	7	6.0	7	83	10	59	47	0	0	52	1.00
10764065--10764111	25	1.9	25	86	4	69	51	14	0	34	1.43
10770406--10770654	124	2.0	124	99	0	489	40	8	15	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10770705--10770749	16	2.8	16	83	6	56	73	2	6	17	1.15
10770775--10770815	19	2.2	19	86	8	57	78	2	9	9	1.06
10779177--10779308	3	43.3	3	71	22	71	35	3	4	56	1.35
10779200--10779290	12	7.2	12	81	18	98	38	1	3	57	1.23
10779189--10779295	19	5.7	19	76	18	91	38	2	3	55	1.33
10779324--10779352	5	5.8	5	100	0	58	0	17	0	82	0.66
10780207--10780241	16	2.3	15	90	5	52	11	5	0	82	0.82
10780303--10780354	27	1.9	27	92	0	86	59	9	0	30	1.29
10785126--10785158	16	2.1	16	100	0	66	51	6	24	18	1.68
10787343--10787380	14	2.7	14	100	0	76	21	23	0	55	1.44
10789118--10789146	2	14.5	2	100	0	58	48	0	0	51	1.00
10789165--10789210	12	3.9	12	88	8	60	23	0	4	71	1.03
10789124--10789200	12	6.4	12	77	16	61	35	1	2	61	1.18
10796047--10796294	127	2.0	127	81	6	297	34	12	15	37	1.85
10796083--10796316	64	3.7	63	70	8	177	32	11	16	38	1.85
10800435--10801317	186	4.8	187	80	6	928	40	10	12	36	1.78
10800435--10801317	373	2.4	369	79	7	922	40	10	12	36	1.78
10807693--10807728	16	2.2	16	100	0	72	33	16	13	36	1.89
10809312--10809436	34	3.7	34	80	4	135	39	16	13	30	1.88
10809291--10809436	68	2.2	69	81	2	154	38	16	14	30	1.88
10809312--10809459	34	4.4	34	78	5	129	37	17	14	30	1.89
10809312--10809456	68	2.1	68	84	0	182	38	17	13	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10809312--10809484	68	2.5	68	80	0	166	36	16	15	31	1.90
10814345--10814386	21	2.0	21	85	4	57	33	21	11	33	1.90
10816735--10816968	125	1.9	124	86	1	335	32	13	13	40	1.83
10816858--10817813	187	5.1	186	84	4	1172	34	12	11	40	1.80
10820316--10820360	21	2.1	21	84	8	56	31	2	4	62	1.27
10821853--10821922	35	2.0	35	86	5	97	34	21	11	32	1.89
10822600--10823076	242	2.0	241	88	1	713	39	16	12	31	1.86
10825812--10825845	10	3.5	10	84	8	52	52	0	0	47	1.00
10828858--10828897	19	2.1	19	85	0	53	47	37	0	15	1.45
10828947--10828984	18	2.1	18	90	0	58	31	21	10	36	1.87
10830780--10830909	37	3.4	37	76	12	120	30	20	11	37	1.88
10830824--10830908	42	2.0	42	86	0	116	30	18	11	38	1.87
10830772--10830929	37	4.1	38	76	8	113	32	20	10	37	1.86
10831443--10831697	56	4.7	56	73	10	206	27	16	12	44	1.83
10831462--10831558	49	2.0	49	83	0	122	27	18	11	42	1.85
10831599--10831722	56	2.2	55	75	5	124	29	15	11	43	1.81
10831681--10831783	49	2.1	48	81	1	125	25	15	9	49	1.75
10831443--10831902	216	2.1	215	80	2	519	27	14	12	45	1.80
10831766--10831899	55	2.4	55	86	0	169	29	8	11	50	1.70
10831993--10832039	24	2.0	24	83	8	60	40	4	2	53	1.32
10832346--10832472	68	1.9	68	91	0	209	40	14	7	37	1.74
10838486--10838528	21	2.0	22	86	13	63	39	20	20	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10842775--10842877	49	2.1	49	90	1	163	35	8	26	29	1.86
10843283--10843327	19	2.4	18	88	3	63	84	0	13	2	0.72
10843284--10843328	14	3.4	13	84	9	56	84	0	13	2	0.72
10843284--10843335	13	4.0	13	85	11	63	84	0	13	1	0.70
10844517--10844584	27	2.5	26	84	11	84	77	1	14	5	1.02
10845750--10845787	14	2.7	14	87	0	58	26	10	21	42	1.85
10846609--10846879	40	6.7	40	74	4	186	36	17	12	33	1.87
10846609--10846879	80	3.4	79	74	7	213	36	17	12	33	1.87
10846891--10846973	22	3.8	22	67	9	53	32	24	14	28	1.94
10846956--10846999	22	2.0	22	86	8	63	31	20	13	34	1.92
10849455--10849547	27	3.5	26	75	19	84	44	25	4	25	1.72
10849455--10849548	20	4.6	20	70	5	64	43	26	4	25	1.73
10849547--10849598	19	2.7	19	88	5	70	44	44	0	11	1.40
10849481--10849695	113	1.9	113	94	0	376	43	34	2	19	1.65
10849608--10849674	20	3.3	20	81	8	73	44	32	2	19	1.66
10849662--10849723	19	3.3	19	84	6	83	41	45	0	12	1.42
10849514--10849674	7	24.0	7	68	12	79	44	35	1	18	1.61
10853656--10853712	25	2.3	25	84	6	71	12	8	1	77	1.07
10853651--10853703	20	2.5	22	80	20	67	11	11	0	77	1.00
10855662--10855706	23	1.9	24	81	4	56	22	24	11	42	1.86
10856445--10856470	3	8.7	3	100	0	52	34	0	0	65	0.93
10857488--10857545	10	6.1	10	71	18	52	68	3	1	25	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10857488--10857550	18	3.1	20	69	26	51	69	3	1	25	1.12
10865417--10865447	15	2.1	15	93	0	53	25	29	0	45	1.54
10868869--10869134	40	6.9	40	74	14	121	27	15	17	39	1.90
10868856--10869136	79	3.6	79	80	9	328	28	15	17	39	1.90
10868935--10869007	33	2.2	33	87	0	101	26	13	17	42	1.87
10868896--10869098	73	2.7	74	82	7	223	28	15	16	39	1.89
10868968--10869164	40	4.9	40	80	6	213	26	16	18	38	1.92
10868823--10869065	112	2.2	111	83	2	306	27	14	18	39	1.89
10869347--10869372	3	8.7	3	100	0	52	34	0	0	65	0.93
10870233--10870281	19	2.6	19	90	0	71	14	2	2	81	0.87
10870234--10870281	6	7.8	6	80	13	53	14	2	2	81	0.88
10870310--10870338	7	4.1	7	100	0	58	41	0	0	58	0.98
10875750--10875786	6	6.0	6	90	3	56	67	18	13	0	1.23
10883007--10883035	15	1.9	15	100	0	58	41	3	0	55	1.17
10883513--10883555	22	1.9	23	85	4	61	76	0	0	23	0.78
10885746--10885792	20	2.4	21	82	13	64	51	27	2	19	1.58
10886988--10887056	34	2.0	34	97	0	129	24	15	8	50	1.72
10898124--10898284	63	2.6	62	81	5	164	36	18	13	31	1.90
10898423--10898498	35	2.2	35	87	0	116	32	13	19	34	1.90
10901531--10901628	25	3.8	25	75	5	79	50	27	5	17	1.67
10902394--10903044	319	2.0	320	86	2	923	38	14	10	36	1.81
10903281--10903326	23	2.0	23	91	0	74	30	13	15	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10909333--10909646	161	2.0	161	81	6	377	33	9	14	42	1.79
10912589--10912651	29	2.1	29	82	8	74	66	0	4	28	1.12
10914294--10914467	60	2.9	59	78	9	185	32	12	7	48	1.68
10914450--10914482	14	2.3	15	89	5	50	27	0	9	63	1.24
10914465--10914717	57	4.3	57	79	9	276	35	11	5	47	1.65
10914489--10914703	116	1.8	116	84	9	294	34	13	6	46	1.68
10914721--10914786	6	11.3	6	84	11	68	68	0	0	31	0.90
10915709--10915926	44	5.0	43	82	9	221	43	19	15	21	1.88
10915872--10916018	42	3.5	40	81	9	159	45	17	10	25	1.81
10916325--10916537	79	2.7	79	86	1	291	35	19	11	34	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138