genome.fa.s124.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  72  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13511065--13511117	26	2.0	26	85	0	70	26	26	20	26	1.99
13511091--13511593	159	3.2	158	78	5	541	19	26	30	23	1.98
13511567--13511619	26	2.0	26	89	7	81	26	20	20	32	1.98
13510046--13511970	995	1.9	991	81	4	2327	20	26	28	24	1.99
13512768--13512820	26	2.0	26	92	0	88	30	26	18	24	1.98
13513905--13513960	26	2.2	26	80	6	60	30	21	17	30	1.96
13514078--13514130	26	2.0	26	88	0	79	28	26	18	26	1.98
13515847--13515899	26	2.0	26	89	7	81	26	22	22	28	1.99
13516292--13516752	157	2.9	157	78	3	489	19	27	29	22	1.98
13517741--13518321	159	3.7	157	78	6	573	17	29	30	22	1.97
13517659--13518320	318	2.1	317	83	3	821	18	28	30	22	1.97
13518296--13518346	26	2.0	26	96	0	93	25	23	19	31	1.98
13518884--13518936	26	2.0	26	88	0	79	26	24	20	28	1.99
13518910--13519401	158	3.1	156	76	6	488	19	29	30	20	1.97
13519385--13519437	26	2.0	26	85	7	72	33	15	18	32	1.92
13519739--13519790	26	2.0	25	96	3	95	26	19	21	32	1.97
13519129--13520374	354	3.5	349	76	8	1038	20	27	30	21	1.98
13526214--13526266	26	2.0	26	89	7	81	30	22	18	28	1.98
13526315--13526779	171	2.7	171	81	3	512	19	29	30	21	1.97
13526752--13526804	26	2.0	26	96	0	97	26	28	20	24	1.99
13527252--13527304	26	2.0	26	89	7	81	26	22	20	30	1.98
13527975--13528027	26	2.0	26	82	7	63	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13529106--13529600	159	3.1	158	76	5	480	21	27	29	22	1.99
13534829--13534881	26	2.0	26	85	7	72	28	22	20	28	1.99
13535548--13535600	26	2.0	26	92	0	88	28	26	20	24	1.99
13535581--13536004	159	2.7	158	75	5	440	20	26	30	22	1.98
13536054--13536107	26	2.1	26	89	6	83	31	22	18	27	1.97
13536605--13536657	26	2.0	26	88	0	79	26	24	18	30	1.98
13537391--13537855	159	2.9	160	77	6	473	18	27	30	23	1.98
13538976--13539267	159	1.8	158	86	2	424	16	25	33	24	1.96
13539241--13539293	26	2.0	26	92	7	90	26	24	20	28	1.99
13540510--13540562	26	2.0	26	89	7	81	26	28	20	24	1.99
13540210--13540566	196	1.8	197	85	1	502	21	26	28	23	1.99
13541432--13541786	197	1.8	197	82	4	457	23	27	25	22	2.00
13542779--13542831	26	2.0	26	92	0	88	28	24	18	28	1.98
13543044--13543471	170	2.5	170	80	4	452	18	26	29	24	1.98
13543949--13544001	26	2.0	26	92	0	88	24	24	22	28	2.00
13544146--13544198	26	2.0	26	88	0	79	32	24	16	26	1.97
13545219--13545269	26	2.0	26	88	0	75	29	29	13	27	1.94
13545252--13545743	159	3.1	156	76	7	476	21	27	28	22	1.99
13545717--13545769	26	2.0	26	89	7	81	32	20	16	30	1.95
13546427--13546479	26	2.0	26	92	7	90	26	24	20	28	1.99
13546842--13546894	26	2.0	26	85	7	72	30	22	16	30	1.96
13547222--13547274	26	2.0	26	89	7	81	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13547386--13547748	156	2.3	155	79	7	381	20	26	28	23	1.99
13547720--13547772	26	2.0	26	88	0	79	30	28	16	24	1.97
13547570--13548006	184	2.4	183	86	2	599	22	26	27	23	2.00
13548413--13548465	26	2.0	26	92	7	90	26	24	20	28	1.99
13547743--13549173	514	2.8	507	81	4	1547	21	25	29	23	1.99
13548928--13548978	26	2.0	26	88	7	77	31	25	13	29	1.94
13549294--13549346	26	2.0	26	96	0	97	28	20	20	30	1.98
13549320--13550139	317	2.6	316	83	2	982	20	26	29	23	1.99
13549320--13550138	158	5.2	157	71	9	534	20	26	29	23	1.99
13550112--13550164	26	2.0	26	89	7	81	24	24	22	28	2.00
13550661--13550713	26	2.0	26	89	7	81	28	24	20	26	1.99
13551448--13551750	159	1.9	158	82	4	378	17	25	31	26	1.97
13552580--13552632	26	2.0	26	89	7	81	28	24	18	28	1.98
13552937--13553461	158	3.3	159	77	6	494	19	26	29	24	1.98
13560068--13560120	26	2.0	26	88	0	79	28	26	18	26	1.98
13560094--13560598	159	3.2	160	76	8	395	20	27	29	21	1.98
13560570--13560648	26	3.0	26	94	3	133	27	24	20	27	1.99
13560975--13561027	26	2.0	26	88	0	79	32	26	16	24	1.97
13561001--13561503	159	3.2	156	80	6	507	18	28	29	22	1.98
13561001--13561661	159	4.2	156	77	7	494	19	27	29	23	1.98
13561634--13561686	26	2.0	26	92	7	90	26	24	20	28	1.99
13561942--13561992	26	2.0	26	85	14	70	33	25	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13562293--13562345	26	2.0	26	88	0	79	26	26	22	24	2.00
13562371--13562993	160	3.9	158	73	10	381	20	28	28	22	1.98
13562369--13563336	159	5.8	166	69	15	432	19	27	29	22	1.98
13562966--13563018	26	2.0	26	92	0	88	28	28	18	24	1.98
13562737--13563521	343	2.2	350	82	4	933	19	27	29	23	1.98
13564220--13564272	26	2.0	26	92	0	88	32	28	15	24	1.95
13564333--13564751	159	2.6	160	80	3	457	17	28	28	24	1.98
13564723--13564775	26	2.0	26	89	7	81	28	24	18	28	1.98
13565445--13565497	26	2.0	26	89	7	81	28	26	18	26	1.98
13565471--13565973	159	3.2	158	78	5	480	20	28	29	22	1.98
13567379--13568130	159	4.7	159	75	5	638	18	27	30	23	1.98
13567316--13567902	317	1.9	317	81	2	730	19	26	30	23	1.98
13567352--13568187	159	5.2	159	74	8	581	19	27	30	22	1.98
13568321--13568373	26	2.0	26	82	7	63	30	26	16	26	1.97
13568689--13568741	26	2.0	26	96	0	97	26	28	20	24	1.99
13569258--13569697	158	2.8	159	77	7	414	20	27	29	22	1.98
13569669--13569721	26	2.0	26	89	7	81	28	20	18	32	1.97
13570393--13570445	26	2.0	26	88	0	79	28	30	18	22	1.98
13570575--13570627	26	2.0	26	92	7	90	26	22	20	30	1.98
13570596--13571414	417	2.0	404	86	5	1137	23	23	24	28	1.99
13571741--13572241	159	3.2	158	74	7	375	19	25	30	24	1.98
13573158--13573210	26	2.0	26	89	7	81	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13573870--13573922	26	2.0	26	85	0	70	30	28	15	26	1.96
13574394--13574446	26	2.0	26	92	0	88	30	26	16	26	1.97
13574125--13574604	184	2.6	184	80	6	508	20	26	28	24	1.99
13575499--13575998	158	3.2	155	75	5	446	21	26	28	23	1.99
13577625--13577677	26	2.0	26	96	0	97	26	28	20	24	1.99
13577706--13577991	157	1.8	157	83	1	385	16	27	32	23	1.96
13577872--13578360	183	2.7	182	82	6	565	21	27	26	24	1.99
13579725--13579777	26	2.0	26	85	7	72	30	24	16	28	1.97
13579922--13579974	26	2.0	26	86	13	74	28	26	16	28	1.97
13579948--13580449	159	3.2	158	74	9	369	21	27	28	22	1.99
13580423--13580475	26	2.0	26	92	7	90	30	24	16	28	1.97
13580785--13580837	26	2.0	26	92	0	88	28	28	18	24	1.98
13587911--13587963	26	2.0	26	96	0	97	26	28	20	24	1.99
13588399--13588451	26	2.0	26	89	7	81	26	22	20	30	1.98
13588779--13588831	26	2.0	26	88	0	79	33	28	13	24	1.93
13590334--13590386	26	2.0	26	92	0	88	28	24	20	26	1.99
13589867--13590552	365	1.9	356	82	5	866	19	27	30	23	1.98
13590921--13591799	355	2.5	354	84	3	1088	19	27	30	21	1.98
13591559--13591608	26	1.9	26	95	0	91	28	26	18	28	1.98
13591582--13592074	158	3.1	158	73	7	343	19	27	30	22	1.98
13592484--13592536	26	2.0	26	89	7	81	26	22	20	30	1.98
13591897--13592708	427	1.9	427	88	0	1239	21	24	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13593062--13593114	26	2.0	26	92	0	88	28	28	18	24	1.98
13593088--13593594	159	3.2	159	76	8	465	19	26	30	23	1.98
13593570--13593619	26	1.9	26	88	8	75	26	22	18	34	1.96
13593937--13593987	26	2.0	26	84	7	68	33	27	11	27	1.92
13593963--13594462	159	3.2	159	76	5	467	20	26	29	24	1.99
13592595--13594490	874	2.2	876	81	5	2188	20	27	28	23	1.99
13594438--13594488	26	2.0	26	92	7	86	27	21	19	31	1.97
13595153--13595205	26	2.0	26	88	0	79	28	26	18	26	1.98
13595656--13595707	26	2.0	26	88	7	79	30	23	15	30	1.95
13596033--13596085	26	2.0	26	85	7	72	30	26	16	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138