genome.fa.s124.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  56  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11574179--11574267	43	2.1	43	82	14	105	62	4	2	30	1.27
11574255--11574308	20	2.5	22	88	5	76	62	9	1	25	1.35
11574252--11574308	21	2.5	22	86	8	71	63	8	1	26	1.34
11576039--11576090	27	1.9	27	84	7	70	48	13	3	34	1.61
11577268--11577294	2	13.5	2	100	0	54	48	0	51	0	1.00
11577889--11578881	363	2.7	369	94	1	1755	23	25	33	17	1.96
11581011--11581044	2	17.0	2	93	0	59	52	0	0	47	1.00
11581007--11581044	10	3.8	10	96	0	58	55	0	0	44	0.99
11589490--11589514	12	2.1	12	100	0	50	60	16	8	16	1.58
11589948--11590108	52	3.1	55	62	23	139	48	20	6	24	1.74
11589933--11590129	100	2.0	100	96	2	369	47	20	7	24	1.75
11598839--11598880	22	1.9	22	95	0	75	45	7	11	35	1.69
11602388--11602429	22	2.0	21	85	4	57	40	4	21	33	1.74
11609192--11609248	21	2.5	22	83	16	73	49	14	8	28	1.72
11609212--11609254	21	2.0	21	95	0	77	51	13	9	25	1.71
11613202--11613252	18	2.9	18	80	5	61	25	0	27	47	1.53
11613358--11613402	13	3.5	13	87	3	65	20	0	37	42	1.52
11613358--11613410	13	4.2	13	82	2	63	20	0	37	41	1.53
11613358--11613410	26	2.1	25	89	3	79	20	0	37	41	1.53
11613386--11613451	19	3.6	18	70	13	53	19	4	31	43	1.71
11613378--11613465	37	2.3	38	84	3	115	20	3	34	42	1.69
11614947--11615218	142	1.9	143	81	4	334	40	13	11	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11627785--11627853	34	2.0	34	82	0	84	39	10	8	42	1.70
11627916--11627990	34	2.2	34	82	0	96	45	16	5	33	1.69
11630192--11630356	64	2.6	63	79	8	174	39	3	6	51	1.42
11634555--11634671	34	3.7	32	69	18	84	28	19	17	34	1.95
11634584--11634701	28	4.0	28	70	15	78	28	16	16	37	1.92
11634509--11634717	62	3.4	62	79	2	215	30	20	15	34	1.93
11634787--11634848	26	2.4	26	82	15	76	29	19	19	32	1.96
11635427--11635501	37	2.0	37	86	0	105	42	16	8	33	1.77
11635475--11635564	44	2.0	45	80	6	103	45	12	10	32	1.75
11635714--11635879	34	5.3	32	66	28	99	30	21	17	30	1.96
11635710--11635879	60	2.8	60	87	3	243	31	20	17	30	1.96
11636509--11636600	23	4.1	23	72	16	75	43	14	10	31	1.79
11636877--11636979	28	3.4	29	74	20	95	30	19	11	38	1.87
11636877--11637092	62	3.5	62	77	0	171	27	19	14	37	1.91
11637735--11637809	38	2.0	38	86	5	107	49	14	6	29	1.69
11637794--11637873	23	3.4	23	77	1	79	46	10	12	31	1.75
11638187--11638250	13	4.8	13	76	5	65	34	23	15	26	1.95
11638183--11638250	27	2.5	27	95	0	127	33	23	16	26	1.95
11638477--11638520	20	2.3	20	88	7	65	20	25	0	54	1.45
11639756--11639799	21	2.2	19	84	12	52	2	22	2	72	1.07
11643690--11643729	15	2.6	15	81	18	55	12	10	0	77	0.99
11643691--11643729	16	2.4	16	83	8	53	12	7	0	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11644100--11644221	59	2.1	59	96	0	226	55	10	10	22	1.65
11646600--11646638	15	2.4	17	87	8	55	71	0	12	15	1.14
11648594--11648628	13	2.7	13	90	0	52	71	0	2	25	1.00
11648704--11648901	109	1.8	106	80	11	233	45	6	6	41	1.55
11649106--11649139	17	2.0	17	88	11	52	47	2	5	44	1.42
11650338--11650382	23	2.0	23	82	8	56	75	6	8	8	1.19
11654536--11654578	21	2.0	21	86	0	59	51	6	18	23	1.70
11659970--11660017	18	2.7	18	93	0	78	33	14	2	50	1.55
11662302--11662338	18	2.1	18	89	0	56	27	21	10	40	1.86
11662582--11662833	17	14.9	17	71	7	120	31	17	7	43	1.76
11662582--11662746	34	4.9	34	77	5	147	34	15	5	44	1.69
11662582--11662797	51	4.3	51	76	5	154	32	16	6	44	1.72
11662810--11662868	18	3.3	18	68	13	50	25	22	11	40	1.88
11662916--11662959	20	2.2	20	91	0	70	22	6	13	56	1.61
11665931--11666035	52	2.0	52	83	3	131	26	20	8	44	1.80
11667101--11667152	21	2.5	21	93	0	86	23	26	26	23	2.00
11673943--11673995	24	2.2	25	83	10	74	69	0	11	18	1.17
11674313--11674350	20	1.9	20	88	0	58	13	15	18	52	1.74
11674686--11674724	17	2.4	17	86	4	53	17	0	5	76	0.96
11674937--11674984	18	2.7	17	78	9	51	72	8	0	18	1.08
11676535--11676639	50	2.1	50	87	0	147	25	21	4	47	1.70
11685535--11685607	9	7.8	9	73	13	58	80	2	12	4	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11686604--11686937	42	8.0	41	79	7	307	25	11	20	42	1.86
11686604--11686867	41	6.4	41	83	6	300	24	11	21	42	1.86
11686604--11686937	84	4.0	83	81	5	372	25	11	20	42	1.86
11686937--11687020	42	2.0	43	88	2	125	21	11	21	45	1.84
11686939--11687036	42	2.3	42	83	1	124	22	12	20	44	1.84
11686842--11687048	99	2.1	97	78	12	208	24	11	18	45	1.82
11688016--11688058	4	10.2	4	81	18	52	20	0	4	74	1.00
11688267--11688323	19	3.0	19	76	19	57	75	3	0	21	0.95
11688668--11688762	49	2.0	48	85	6	129	47	10	12	29	1.75
11694346--11694407	1	62.0	1	77	0	52	87	0	9	3	0.66
11694346--11694407	18	3.4	17	86	10	79	87	0	9	3	0.66
11694356--11694407	10	5.5	10	88	8	74	88	0	11	0	0.52
11694356--11694408	9	5.7	10	82	14	69	86	0	13	0	0.56
11694357--11694408	17	3.0	17	91	2	77	86	0	13	0	0.57
11695368--11695404	16	2.3	16	100	0	74	59	10	13	16	1.61
11696736--11696840	41	2.5	40	83	8	122	34	19	18	28	1.95
11696898--11697240	125	2.8	122	89	3	526	33	14	14	37	1.87
11697217--11697283	22	3.1	21	80	6	80	31	28	14	25	1.95
11697348--11697390	22	2.0	22	86	9	61	30	25	16	27	1.97
11697242--11697927	110	6.2	110	70	10	414	24	20	16	38	1.92
11697493--11697671	88	2.0	87	88	6	263	22	21	17	39	1.93
11697648--11697709	23	2.7	23	80	2	72	25	22	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11697789--11697831	22	2.0	22	90	0	68	25	23	20	30	1.99
11697853--11698008	80	1.9	80	86	1	222	24	20	14	40	1.90
11697748--11698095	190	1.8	190	86	1	500	22	19	16	40	1.91
11698084--11698138	23	2.4	23	80	14	69	25	16	21	36	1.94
11698100--11698153	22	2.4	22	81	3	54	25	18	18	37	1.94
11698105--11698354	111	2.3	111	84	1	322	22	19	16	41	1.90
11698163--11698539	199	1.9	198	84	4	501	22	21	16	39	1.92
11697568--11698840	442	2.9	435	81	4	1422	23	19	17	39	1.92
11698327--11698562	110	2.1	111	84	6	320	24	21	16	37	1.94
11698414--11698693	132	2.1	133	83	4	345	24	21	16	37	1.94
11698333--11698785	241	1.9	241	83	2	597	23	20	17	37	1.93
11698547--11698777	109	2.1	109	83	2	286	23	19	16	39	1.92
11699056--11699094	19	2.1	19	85	0	51	66	0	25	7	1.18
11699384--11699413	13	2.4	12	89	10	51	83	6	0	10	0.81
11699376--11699416	17	2.4	17	83	0	55	85	4	0	9	0.73
11700065--11700115	18	2.9	18	74	8	52	23	1	1	72	1.05
11700065--11700115	19	2.8	18	74	11	50	23	1	1	72	1.05
11703295--11703328	6	5.7	6	86	13	52	64	0	0	35	0.94
11703295--11703345	21	2.4	21	74	6	50	64	1	0	33	1.05
11703672--11703702	2	15.5	2	100	0	62	51	0	0	48	1.00
11705482--11705540	24	2.4	23	83	13	66	55	0	0	44	0.99
11705483--11705555	24	3.1	21	72	20	56	54	1	0	43	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11705868--11705926	24	2.4	23	83	13	66	55	0	0	44	0.99
11705181--11705954	386	2.0	385	96	0	1424	47	9	8	35	1.65
11705869--11705941	24	3.1	21	72	20	56	54	1	0	43	1.08
11706173--11706198	10	2.6	10	100	0	52	92	0	0	7	0.39
11706387--11706420	15	2.2	16	89	5	52	67	0	0	32	0.91
11706778--11706811	2	17.0	2	100	0	68	50	0	0	50	1.00
11707931--11708018	27	3.2	27	70	20	74	34	3	15	46	1.63
11707945--11708039	27	3.5	26	72	19	77	32	5	12	49	1.63
11708994--11709047	27	2.0	27	92	0	90	38	11	20	29	1.87
11716267--11716348	41	2.0	41	95	0	146	34	15	10	39	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138