genome.fa.s124.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  11  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3160373--3160453	37	2.2	37	76	8	85	23	0	3	72	1.00
3160479--3161073	58	10.1	57	80	10	601	44	6	11	36	1.68
3160479--3161075	235	2.5	234	88	5	839	44	7	11	36	1.69
3160515--3161075	177	3.2	174	82	8	649	43	7	12	37	1.70
3164947--3165036	11	8.1	11	76	16	55	80	0	12	7	0.91
3164973--3165034	1	62.0	1	75	0	52	87	0	9	3	0.66
3164985--3165034	11	4.8	10	90	7	73	88	0	10	2	0.61
3164972--3165034	22	2.9	22	85	2	83	85	0	11	3	0.70
3164974--3165034	32	1.9	32	90	6	97	86	0	9	3	0.67
3164943--3165032	42	2.2	43	78	11	109	78	0	13	7	0.94
3164973--3165034	15	3.9	15	85	10	79	87	0	9	3	0.66
3164973--3165034	10	6.3	10	83	7	74	87	0	9	3	0.66
3165723--3165847	63	2.0	63	92	3	207	38	8	21	31	1.84
3166496--3166601	43	2.5	42	78	10	115	36	12	16	33	1.87
3166870--3167247	41	9.2	41	85	5	480	25	15	20	39	1.91
3166870--3167416	123	4.6	123	83	6	638	25	14	20	39	1.91
3167218--3167275	28	2.1	28	96	0	107	18	17	22	41	1.90
3167185--3167316	69	1.9	69	89	3	203	24	16	19	39	1.92
3167254--3167416	41	4.0	41	85	6	197	25	14	20	39	1.90
3167254--3167415	83	2.0	81	87	2	234	25	14	20	40	1.90
3167486--3167520	11	3.4	11	92	7	56	88	11	0	0	0.51
3167529--3167670	42	3.3	42	81	5	169	26	14	19	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3167529--3167694	42	3.8	43	79	10	151	27	13	17	41	1.87
3167548--3167723	45	4.0	43	76	10	133	27	11	17	42	1.85
3167867--3168026	43	3.6	44	73	17	120	30	5	2	61	1.32
3167915--3168003	20	3.8	23	78	17	87	30	5	3	60	1.36
3167939--3168021	20	4.1	20	79	14	73	27	4	2	65	1.26
3167866--3168003	23	5.8	23	71	20	90	30	5	2	61	1.31
3167867--3168026	40	3.7	44	72	20	115	30	5	2	61	1.32
3167944--3168024	41	1.9	43	85	14	116	28	4	2	64	1.27
3168444--3168982	119	4.6	117	84	6	665	43	7	12	36	1.71
3168446--3168982	236	2.3	234	86	6	739	43	7	12	36	1.71
3168446--3168980	59	9.1	57	79	10	531	43	7	12	36	1.71
3170558--3171039	202	2.4	200	79	7	503	40	13	12	34	1.82
3175590--3175676	36	2.4	36	90	0	129	63	16	12	8	1.51
3175835--3175933	36	2.6	37	76	10	94	62	11	16	10	1.53
3175590--3176242	248	2.6	248	83	6	775	43	15	22	17	1.87
3176092--3176182	36	2.5	36	85	3	110	61	9	18	9	1.54
3177076--3177946	236	3.7	234	84	5	977	45	12	8	32	1.73
3177076--3177944	473	1.8	469	81	4	1068	46	12	8	32	1.73
3180138--3180179	18	2.2	20	83	8	52	47	0	2	50	1.14
3180842--3180960	53	2.2	52	82	8	134	38	7	5	47	1.56
3185733--3185773	20	2.0	20	100	0	82	19	14	21	43	1.87
3196188--3196233	12	3.8	12	82	0	65	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3196200--3196233	8	4.2	8	84	0	50	44	0	0	55	0.99
3196200--3196251	16	3.4	16	79	12	56	48	0	0	51	1.00
3200195--3200220	2	13.0	2	100	0	52	50	0	0	50	1.00
3220990--3221018	2	14.5	2	100	0	58	51	0	0	48	1.00
3221018--3221047	2	15.0	2	100	0	60	50	0	50	0	1.00
3222552--3222577	4	6.5	4	100	0	52	0	23	0	76	0.78
3228717--3228771	26	2.1	26	83	6	67	49	0	1	49	1.11
3234443--3234494	26	2.0	26	96	0	95	30	11	21	36	1.89
3244854--3244892	15	2.6	16	88	8	55	38	0	7	53	1.30
3246601--3246652	25	2.1	25	82	7	61	30	3	1	63	1.23
3250940--3251012	11	7.0	11	67	22	50	34	2	0	63	1.09
3250907--3250997	25	3.6	25	71	15	71	37	2	0	60	1.09
3250935--3251015	29	2.7	30	76	14	96	34	2	0	62	1.08
3256294--3256319	12	2.2	12	100	0	52	23	7	38	30	1.83
3257452--3257627	88	2.0	87	96	1	325	33	21	13	31	1.92
3264786--3264812	2	13.5	2	100	0	54	48	0	51	0	1.00
3265559--3265587	2	14.5	2	100	0	58	48	0	0	51	1.00
3267526--3267558	3	11.0	3	100	0	66	66	0	0	33	0.92
3268669--3268726	26	2.2	26	81	9	64	53	8	0	37	1.32
3268671--3268730	31	1.9	31	89	0	93	55	8	0	36	1.30
3268668--3268736	31	2.4	29	79	13	81	55	7	1	36	1.37
3271451--3271482	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3276317--3276347	14	2.1	15	94	5	55	48	0	0	51	1.00
3276398--3276433	19	2.0	17	89	10	54	72	0	0	27	0.85
3279556--3279601	24	2.0	23	86	4	65	26	4	2	67	1.21
3280368--3280419	20	2.6	21	73	17	56	32	0	7	59	1.26
3280654--3280728	27	2.7	26	82	13	80	38	1	1	58	1.15
3280658--3280728	29	2.6	27	82	13	74	38	1	1	59	1.15
3280775--3280858	23	3.4	23	66	15	60	44	1	8	46	1.41
3280852--3280935	29	2.8	32	74	13	79	59	3	3	33	1.32
3283320--3283353	18	1.9	17	88	5	50	29	14	2	52	1.56
3288999--3289127	36	3.7	35	80	11	167	33	29	11	25	1.91
3289048--3289096	15	3.2	15	72	16	55	32	30	12	24	1.92
3289013--3289141	67	1.9	67	90	0	204	32	29	11	26	1.91
3289122--3289150	15	1.9	15	100	0	58	27	27	13	31	1.94
3289537--3289577	2	20.5	2	100	0	82	0	51	0	48	1.00
3292612--3292651	2	20.0	2	100	0	80	50	0	50	0	1.00
3292622--3292819	100	2.0	100	89	3	301	54	12	20	12	1.70
3304897--3304950	25	2.1	26	83	10	67	38	5	3	51	1.43
3310695--3311077	187	2.0	192	86	3	542	26	14	21	37	1.92
3319136--3319251	56	2.1	57	86	1	162	56	16	7	18	1.63
3326066--3326096	2	15.5	2	100	0	62	51	0	0	48	1.00
3326133--3326157	3	8.3	3	100	0	50	0	36	0	64	0.94
3338609--3338655	23	2.0	24	83	4	60	55	2	0	42	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3338666--3338741	28	2.7	28	72	20	68	44	3	0	51	1.20
3338666--3338727	31	2.0	31	87	0	88	43	4	0	51	1.23
3338773--3338802	13	2.4	13	94	5	53	30	0	0	70	0.88
3339258--3339314	30	1.9	30	82	13	73	54	0	0	45	0.99
3340914--3340946	13	2.4	14	85	10	50	66	3	9	21	1.33
3351655--3351694	13	3.0	13	81	3	53	65	2	2	30	1.19
3359412--3359632	110	2.0	110	94	0	388	33	14	14	38	1.86
3360475--3361229	58	13.2	58	78	7	584	36	9	6	47	1.62
3360959--3360987	14	2.1	14	93	6	51	34	10	0	55	1.34
3360597--3361148	282	2.0	282	85	6	769	34	9	7	49	1.63
3360478--3361229	114	6.6	116	78	8	600	36	9	6	47	1.61
3367589--3367618	16	1.9	15	93	6	51	46	13	3	36	1.60
3368001--3368052	11	4.5	11	79	13	59	59	1	3	34	1.27
3375347--3375373	14	1.9	14	100	0	54	59	3	0	37	1.15
3375499--3375564	26	2.6	25	80	7	87	51	0	3	45	1.16
3375561--3375630	19	3.8	18	80	10	70	54	0	1	44	1.09
3375659--3375709	12	4.2	13	78	16	65	47	0	0	52	1.00
3375661--3375745	23	3.6	23	78	7	89	44	0	1	54	1.07
3375662--3375745	18	4.7	18	69	16	66	44	0	1	54	1.07
3376876--3376929	26	2.0	26	82	10	65	57	5	0	37	1.22
3377285--3377338	21	2.6	20	76	5	54	64	1	1	31	1.14
3384555--3384581	13	2.1	13	100	0	54	37	7	7	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3385571--3385617	24	1.9	24	86	4	67	63	8	8	19	1.48
3394382--3394409	11	2.5	11	100	0	56	32	0	0	67	0.91
3395073--3395140	30	2.3	30	82	2	84	42	0	1	55	1.08
3395528--3395565	15	2.4	16	86	8	51	47	0	0	52	1.00
3395647--3395693	13	3.3	15	77	17	55	27	0	6	65	1.16
3395668--3395715	22	2.1	23	81	11	55	33	0	2	64	1.05
3398531--3398933	59	6.7	59	87	7	537	32	14	7	45	1.73
3399013--3399051	8	5.4	8	80	20	50	79	7	0	12	0.93
3399019--3399060	13	3.3	13	86	6	59	78	7	2	11	1.04
3399057--3399099	12	3.7	12	93	6	79	79	6	0	13	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138