genome.fa.s124.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  69  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13259278--13259330	26	2.0	26	89	7	81	30	24	16	28	1.97
13259340--13259761	159	2.7	160	80	4	415	18	29	29	23	1.97
13259733--13259785	26	2.0	26	89	7	81	26	22	20	30	1.98
13259576--13259945	185	2.0	185	85	3	494	20	24	28	25	1.99
13260134--13260630	158	3.1	158	75	6	486	18	25	30	24	1.98
13260799--13260851	26	2.0	26	92	0	88	26	22	20	30	1.98
13261338--13261390	26	2.0	26	85	0	70	28	20	18	32	1.97
13261824--13261876	26	2.0	26	89	7	81	30	18	16	33	1.94
13262019--13262071	26	2.0	26	92	0	88	26	26	20	26	1.99
13262085--13262385	159	1.9	158	82	4	374	17	28	29	23	1.97
13262362--13262414	26	2.0	26	92	7	90	26	24	20	28	1.99
13263372--13263872	158	3.2	157	75	6	483	19	26	30	23	1.98
13264227--13264279	26	2.0	26	88	0	79	30	24	16	28	1.97
13264728--13264780	26	2.0	26	89	7	81	28	22	18	30	1.98
13264570--13265123	184	3.0	181	83	5	641	21	27	27	23	1.99
13264912--13264964	26	2.0	26	96	0	97	26	28	20	24	1.99
13264189--13265989	685	2.6	693	83	4	2168	20	26	28	24	1.99
13265412--13265464	26	2.0	26	85	7	72	28	22	18	30	1.98
13265621--13265673	26	2.0	26	96	0	97	26	28	20	24	1.99
13265963--13266015	26	2.0	26	89	7	81	28	22	20	28	1.99
13267439--13267491	26	2.0	26	89	7	81	26	22	20	30	1.98
13268506--13268556	26	2.0	26	88	7	77	29	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13269069--13269121	26	2.0	26	89	7	81	28	24	18	28	1.98
13269823--13269878	26	2.2	26	93	6	96	28	21	19	30	1.98
13269851--13270353	159	3.2	157	76	7	525	20	26	30	23	1.98
13270327--13270379	26	2.0	26	89	7	81	26	26	20	26	1.99
13275622--13275674	26	2.0	26	89	7	81	26	22	18	32	1.97
13278742--13278820	26	3.0	26	94	3	133	26	21	20	31	1.98
13278794--13279163	171	2.2	170	82	5	442	20	28	30	21	1.98
13279135--13279187	26	2.0	26	88	0	79	28	26	18	26	1.98
13279085--13279469	197	2.0	197	87	1	565	22	29	26	21	1.99
13279332--13279383	26	2.0	26	88	7	79	28	28	15	26	1.96
13279422--13279862	159	2.8	158	77	6	381	19	25	29	25	1.98
13279833--13279885	26	2.0	26	89	7	81	28	24	18	28	1.98
13279675--13280045	185	2.0	184	86	2	521	21	26	28	23	1.99
13280205--13280254	26	1.9	26	91	0	82	26	22	20	32	1.98
13281115--13281167	26	2.0	26	85	0	70	28	24	18	28	1.98
13286307--13286359	26	2.0	26	88	0	79	30	22	18	28	1.98
13286374--13287153	159	4.9	160	75	6	629	19	27	29	23	1.98
13286334--13287153	317	2.6	318	82	4	949	20	27	29	23	1.99
13287995--13288371	158	2.4	159	80	6	433	18	27	31	23	1.97
13287875--13288369	159	3.1	158	75	8	513	18	26	31	23	1.97
13288343--13288395	26	2.0	26	89	7	81	26	22	20	30	1.98
13288189--13288553	184	2.0	184	84	0	478	20	26	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13289358--13289409	25	2.0	26	88	3	79	28	26	17	26	1.97
13289592--13289883	158	1.8	158	81	2	361	19	28	30	21	1.98
13289859--13289909	26	2.0	26	84	7	68	31	21	19	27	1.97
13290579--13290631	26	2.0	26	88	0	79	28	26	18	26	1.98
13290605--13291106	158	3.2	155	77	9	512	19	28	29	22	1.98
13291080--13291132	26	2.0	26	89	7	81	26	22	20	30	1.98
13291816--13291867	26	2.0	26	85	7	70	28	25	17	28	1.97
13292108--13292850	343	2.2	343	82	2	911	20	26	28	24	1.99
13292577--13293011	159	2.7	160	78	6	454	18	29	29	22	1.98
13292983--13293035	26	2.0	26	85	7	72	28	22	18	30	1.98
13294042--13294094	26	2.0	26	85	7	72	28	20	20	30	1.98
13293686--13294390	343	2.1	343	86	1	966	20	26	29	23	1.99
13294068--13294570	159	3.2	156	77	7	523	19	27	31	22	1.98
13294544--13294596	26	2.0	26	92	7	90	26	24	20	28	1.99
13294667--13294699	11	3.0	11	90	0	57	18	30	36	15	1.91
13295265--13295315	26	2.0	26	92	0	84	25	27	19	27	1.99
13295766--13295818	26	2.0	26	85	7	72	28	26	18	26	1.98
13295717--13296465	380	2.0	379	83	2	959	21	26	28	23	1.99
13296955--13297826	380	2.3	376	82	5	984	20	26	29	23	1.99
13297752--13297804	26	2.0	26	89	7	81	24	22	22	30	1.99
13297849--13298280	159	2.7	158	77	4	447	19	27	29	23	1.98
13298254--13298306	26	2.0	26	89	7	81	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13298974--13299026	26	2.0	26	85	7	72	26	24	20	28	1.99
13299000--13299532	158	3.4	156	78	5	552	19	25	31	23	1.98
13299906--13300365	158	2.9	157	78	5	464	17	26	30	25	1.97
13307001--13307500	159	3.2	157	77	6	505	18	28	30	22	1.97
13307474--13307526	26	2.0	26	89	7	81	28	24	18	28	1.98
13307931--13308676	159	4.8	158	78	5	694	19	28	29	22	1.98
13307935--13308677	317	2.4	316	79	3	766	19	28	29	22	1.98
13314919--13314971	26	2.0	26	96	0	97	26	28	20	24	1.99
13315836--13315887	26	2.0	26	88	0	77	26	23	17	32	1.96
13316511--13316561	26	2.0	26	92	0	84	29	23	17	29	1.97
13317192--13317252	26	2.4	26	75	5	72	27	27	18	26	1.98
13316491--13318109	683	2.3	688	81	5	1755	21	25	28	24	1.99
13317225--13317717	158	3.1	158	75	8	369	19	25	30	24	1.98
13317898--13317950	26	2.0	26	92	0	88	26	26	20	26	1.99
13318084--13318134	26	2.0	26	88	7	77	29	23	17	29	1.97
13318292--13318351	26	2.4	26	81	10	72	26	26	20	26	1.99
13317541--13318503	391	2.5	388	79	4	1052	22	25	27	24	2.00
13318318--13318819	158	3.2	159	77	6	518	20	26	29	23	1.99
13318793--13318845	26	2.0	26	89	7	81	28	20	18	32	1.97
13319064--13319372	158	1.9	159	88	1	460	18	28	31	21	1.97
13320079--13320131	26	2.0	26	96	0	97	26	28	20	24	1.99
13320105--13320605	159	3.2	158	77	5	548	20	27	30	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13320579--13320631	26	2.0	26	85	7	72	28	22	18	30	1.98
13320421--13320816	184	2.2	184	83	0	497	21	26	27	23	1.99
13320763--13320815	26	2.0	26	92	0	88	28	28	18	24	1.98
13321485--13321986	159	3.2	159	73	4	453	20	26	29	24	1.99
13321960--13322012	26	2.0	26	85	7	72	30	24	16	28	1.97
13322034--13322340	171	1.8	168	82	4	393	19	26	30	23	1.98
13321896--13322682	353	2.3	342	81	5	900	20	26	29	24	1.99
13322313--13322365	26	2.0	26	88	0	79	26	32	20	20	1.98
13322339--13323242	159	5.6	159	72	8	582	19	27	30	22	1.98
13322333--13323221	488	1.8	490	83	3	1200	19	26	30	22	1.98
13322829--13323244	157	2.6	157	75	5	417	20	27	30	21	1.98
13323577--13323656	26	3.1	26	96	0	142	25	28	21	25	1.99
13323629--13324131	157	3.2	156	74	5	366	20	26	29	24	1.99
13324105--13324157	26	2.0	26	89	7	81	28	24	18	28	1.98
13324311--13324363	26	2.0	26	89	7	81	26	26	20	26	1.99
13324666--13324716	26	2.0	26	88	0	75	33	25	13	27	1.94
13325016--13325067	26	2.0	25	88	3	77	28	21	21	28	1.98
13325764--13326256	159	3.1	157	71	8	426	20	27	27	24	1.99
13326230--13326281	26	2.0	25	88	3	77	28	21	21	28	1.98
13327017--13327480	159	2.9	159	84	2	574	18	30	31	20	1.96
13327453--13327505	26	2.0	26	89	7	81	28	24	18	28	1.98
13327657--13327709	26	2.0	26	88	0	79	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13327995--13328047	26	2.0	26	96	0	97	26	24	20	28	1.99
13328208--13328257	26	1.9	26	92	8	84	24	26	22	28	1.99
13329254--13329304	26	2.0	26	88	0	75	29	25	15	29	1.96
13330739--13330791	26	2.0	26	88	0	79	28	26	18	26	1.98
13331238--13331290	26	2.0	26	85	7	72	30	24	16	28	1.97
13331447--13331499	26	2.0	26	92	0	88	26	26	20	26	1.99
13331316--13332984	882	1.9	882	80	4	1974	20	27	28	23	1.99
13333116--13333594	158	3.1	158	76	7	406	19	27	31	22	1.98
13332148--13333540	705	2.0	707	83	4	1754	20	26	28	23	1.99
13333707--13333758	25	2.0	26	88	3	79	30	25	19	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138